Wall clock time and date at job start Mon Mar 30 2020 04:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47104 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99338 * 2 1 3 5 5 C 1.46907 * 110.99467 * 55.06380 * 4 2 1 6 6 C 1.50694 * 109.47000 * 278.38251 * 5 4 2 7 7 H 1.07999 * 120.00152 * 354.24763 * 6 5 4 8 8 C 1.37882 * 120.00193 * 174.25227 * 6 5 4 9 9 N 1.31520 * 119.99580 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00281 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47520 * 89.99975 * 10 8 6 12 12 H 1.48510 * 109.47114 * 209.99938 * 10 8 6 13 13 H 1.48497 * 109.47262 * 329.99449 * 10 8 6 14 14 C 1.46895 * 110.99943 * 179.01378 * 4 2 1 15 15 H 1.09002 * 112.84970 * 30.24521 * 14 4 2 16 16 C 1.53786 * 113.61748 * 259.04850 * 14 4 2 17 17 C 1.53784 * 87.08006 * 219.93701 * 16 14 4 18 18 H 1.08994 * 113.61095 * 270.88045 * 17 16 14 19 19 N 1.46896 * 113.61026 * 139.98362 * 17 16 14 20 20 C 1.53782 * 87.08329 * 25.43162 * 17 16 14 21 21 C 1.52998 * 113.61055 * 89.11507 * 20 17 16 22 22 C 1.52997 * 113.61327 * 220.02265 * 20 17 16 23 23 H 1.09002 * 109.47652 * 287.80557 * 1 2 3 24 24 H 1.09008 * 109.46843 * 47.80405 * 1 2 3 25 25 H 1.09001 * 109.46983 * 167.79898 * 1 2 3 26 26 H 1.08996 * 109.47600 * 239.99522 * 2 1 3 27 27 H 1.09003 * 109.46697 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46993 * 299.99432 * 3 2 1 29 29 H 1.08996 * 109.47291 * 59.99883 * 3 2 1 30 30 H 1.08994 * 109.47344 * 38.38542 * 5 4 2 31 31 H 1.08998 * 109.46739 * 158.38125 * 5 4 2 32 32 H 0.96996 * 119.99845 * 179.97438 * 9 8 6 33 33 H 1.08998 * 113.61236 * 105.38281 * 16 14 4 34 34 H 1.09001 * 113.60962 * 334.48392 * 16 14 4 35 35 H 1.00895 * 111.00626 * 79.50230 * 19 17 16 36 36 H 1.00902 * 110.99879 * 203.45845 * 19 17 16 37 37 H 1.09000 * 109.47300 * 89.93848 * 21 20 17 38 38 H 1.09011 * 109.46830 * 209.93123 * 21 20 17 39 39 H 1.09000 * 109.47617 * 329.93246 * 21 20 17 40 40 H 1.08996 * 109.47507 * 40.49320 * 22 20 17 41 41 H 1.08997 * 109.47072 * 160.50162 * 22 20 17 42 42 H 1.09000 * 109.46537 * 280.49363 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.4545 -2.0451 1.2940 6 6 0.0704 -1.9711 1.8853 7 1 -0.3119 -1.0287 2.2488 8 6 -0.7080 -3.1066 1.9623 9 7 -0.2426 -4.2541 1.5193 10 14 -2.4240 -3.0147 2.6946 11 1 -3.4051 -2.7156 1.6207 12 1 -2.7629 -4.3153 3.3264 13 1 -2.4683 -1.9405 3.7189 14 6 3.4879 -0.7325 1.2218 15 1 3.9423 0.1245 0.7247 16 6 4.0741 -2.0835 0.7791 17 6 5.1098 -1.9132 1.9031 18 1 6.0076 -1.3791 1.5921 19 7 5.4061 -3.1585 2.6237 20 6 4.0771 -1.0216 2.6126 21 6 3.1287 -1.7944 3.5314 22 6 4.6892 0.2080 3.2865 23 1 -0.3634 0.3142 0.9784 24 1 -0.3633 0.6903 -0.7614 25 1 -0.3633 -1.0045 -0.2172 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.4015 -2.4870 0.2991 31 1 2.0896 -2.6604 1.9314 32 1 -0.7900 -5.0530 1.5738 33 1 4.5076 -2.0648 -0.2207 34 1 3.3975 -2.9243 0.9326 35 1 6.0492 -3.7344 2.1014 36 1 5.7623 -2.9655 3.5479 37 1 3.5558 -1.8473 4.5328 38 1 2.1667 -1.2833 3.5733 39 1 2.9877 -2.8029 3.1428 40 1 5.4599 0.6300 2.6417 41 1 3.9119 0.9524 3.4589 42 1 5.1316 -0.0826 4.2394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405258737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:29 Heat of formation + Delta-G solvation = 34.909947 kcal Electronic energy + Delta-G solvation = -19225.263550 eV Core-core repulsion = 16627.389195 eV Total energy + Delta-G solvation = -2597.874355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07799 -36.16915 -32.63625 -31.98299 -30.61805 -29.37452 -27.33989 -26.65579 -25.48007 -22.86913 -21.97974 -21.15993 -18.92498 -17.32179 -16.54889 -15.48423 -15.24434 -14.69767 -14.45191 -14.19063 -13.86991 -13.22551 -12.95663 -12.48465 -12.38930 -12.01359 -11.75444 -11.51112 -11.36015 -11.22605 -11.12611 -10.90778 -10.75891 -10.60517 -10.52270 -10.22036 -10.08304 -9.83055 -9.49497 -9.46244 -9.28226 -8.78166 -8.32436 -8.18942 -7.02527 -5.88101 -3.84717 3.38118 3.45146 3.48775 4.51453 4.77838 4.98175 5.04599 5.23331 5.34542 5.46225 5.53345 5.69017 5.77077 5.82861 5.89668 5.96142 6.10209 6.15330 6.22900 6.34744 6.40888 6.52490 6.55451 6.59741 6.64237 6.67155 6.88006 6.96718 7.05150 7.09626 7.36423 7.47350 7.52940 7.59582 7.64986 7.75267 8.00282 8.33652 8.42912 8.72568 9.20425 9.74846 11.21775 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.009538 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.088086 B = 2934.835800 C = 3619.365457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.087 3.913 3 C -0.143 4.143 4 N -0.514 5.514 5 C 0.173 3.827 6 C -0.489 4.489 7 H 0.064 0.936 8 C 0.052 3.948 9 N -0.900 5.900 10 Si 0.887 3.113 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.274 1.274 14 C 0.067 3.933 15 H 0.084 0.916 16 C -0.167 4.167 17 C 0.063 3.937 18 H 0.046 0.954 19 N -0.829 5.829 20 C -0.060 4.060 21 C -0.115 4.115 22 C -0.132 4.132 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.058 0.942 30 H -0.008 1.008 31 H 0.059 0.941 32 H 0.258 0.742 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.332 0.668 36 H 0.335 0.665 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 6.902 -0.145 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 C -0.200 4.200 4 N -0.237 5.237 5 C 0.049 3.951 6 C -0.528 4.528 7 H 0.082 0.918 8 C -0.148 4.148 9 N -0.540 5.540 10 Si 0.716 3.284 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.199 1.199 14 C -0.043 4.043 15 H 0.102 0.898 16 C -0.207 4.207 17 C -0.049 4.049 18 H 0.064 0.936 19 N -0.357 5.357 20 C -0.062 4.062 21 C -0.172 4.172 22 C -0.190 4.190 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.009 0.991 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.626 6.845 0.169 11.013 hybrid contribution 0.447 -0.187 -0.443 0.656 sum 9.073 6.658 -0.274 11.257 Atomic orbital electron populations 1.21942 0.93985 1.02106 1.00839 1.21415 0.96326 0.93074 0.91359 1.21938 0.99909 0.97124 1.01072 1.62134 1.03260 1.22122 1.36234 1.20293 0.95307 0.83252 0.96241 1.21273 0.98947 0.94494 1.38045 0.91811 1.24934 0.98031 0.95565 0.96274 1.69958 1.37030 0.99236 1.47786 0.86665 0.85214 0.77191 0.79345 1.21045 1.21553 1.19939 1.23114 0.90221 0.95410 0.95594 0.89780 1.23916 0.98906 1.01790 0.96049 1.22868 0.95211 0.90440 0.96393 0.93593 1.58758 1.52857 1.18010 1.06118 1.21976 0.94771 0.94040 0.95363 1.21614 0.98823 1.01312 0.95414 1.21725 0.99882 0.97947 0.99407 0.91552 0.95463 0.90825 0.96122 0.93614 0.93501 0.92256 0.99056 0.92323 0.93257 0.93488 0.86867 0.85592 0.85235 0.95345 0.90173 0.90265 0.93827 0.92160 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 7.77 37.16 0.29 -2.36 16 2 C 0.09 1.67 2.53 -67.71 -0.17 1.50 16 3 C -0.14 -2.25 9.07 37.16 0.34 -1.91 16 4 N -0.51 -10.64 3.81 -219.17 -0.84 -11.48 16 5 C 0.17 4.27 1.89 -4.97 -0.01 4.26 16 6 C -0.49 -13.06 6.37 -34.44 -0.22 -13.28 16 7 H 0.06 1.72 6.22 -52.49 -0.33 1.39 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 10 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.07 1.20 3.27 -66.90 -0.22 0.98 16 15 H 0.08 1.40 5.76 -51.93 -0.30 1.10 16 16 C -0.17 -3.02 6.73 -25.91 -0.17 -3.19 16 17 C 0.06 0.96 4.37 -66.90 -0.29 0.67 16 18 H 0.05 0.65 8.01 -51.93 -0.42 0.23 16 19 N -0.83 -11.88 8.40 -3.98 -0.03 -11.91 16 20 C -0.06 -1.00 1.34 -153.70 -0.21 -1.21 16 21 C -0.11 -2.21 6.98 37.16 0.26 -1.95 16 22 C -0.13 -1.87 9.14 37.16 0.34 -1.53 16 23 H 0.07 1.41 6.56 -51.93 -0.34 1.07 16 24 H 0.03 0.47 8.09 -51.92 -0.42 0.05 16 25 H 0.07 1.70 6.63 -51.93 -0.34 1.36 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.67 6.08 -51.93 -0.32 0.35 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H -0.01 -0.23 7.80 -51.93 -0.41 -0.64 16 31 H 0.06 1.51 2.85 -51.93 -0.15 1.37 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 2.46 5.25 -51.93 -0.27 2.19 16 35 H 0.33 4.13 9.08 -39.29 -0.36 3.78 16 36 H 0.34 4.26 9.08 -39.29 -0.36 3.91 16 37 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.08 1.76 6.70 -51.92 -0.35 1.41 16 39 H 0.08 1.75 5.26 -51.93 -0.27 1.47 16 40 H 0.04 0.55 8.01 -51.93 -0.42 0.13 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -28.09 307.88 -7.81 -35.89 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.13 Total: 8.56 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.16 Total: -16.67 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.13 Total: -49.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.09 -7.81 -35.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405258737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.804 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds