Wall clock time and date at job start Mon Mar 30 2020 04:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47104 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99338 * 2 1 3 5 5 C 1.46907 * 110.99467 * 55.06380 * 4 2 1 6 6 C 1.50694 * 109.47000 * 278.38251 * 5 4 2 7 7 H 1.07999 * 120.00152 * 354.24763 * 6 5 4 8 8 C 1.37882 * 120.00193 * 174.25227 * 6 5 4 9 9 N 1.31520 * 119.99580 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00281 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47520 * 89.99975 * 10 8 6 12 12 H 1.48510 * 109.47114 * 209.99938 * 10 8 6 13 13 H 1.48497 * 109.47262 * 329.99449 * 10 8 6 14 14 C 1.46895 * 110.99943 * 179.01378 * 4 2 1 15 15 H 1.09002 * 112.84970 * 30.24521 * 14 4 2 16 16 C 1.53786 * 113.61748 * 259.04850 * 14 4 2 17 17 C 1.53784 * 87.08006 * 219.93701 * 16 14 4 18 18 H 1.08994 * 113.61095 * 270.88045 * 17 16 14 19 19 N 1.46896 * 113.61026 * 139.98362 * 17 16 14 20 20 C 1.53782 * 87.08329 * 25.43162 * 17 16 14 21 21 C 1.52998 * 113.61055 * 89.11507 * 20 17 16 22 22 C 1.52997 * 113.61327 * 220.02265 * 20 17 16 23 23 H 1.09002 * 109.47652 * 287.80557 * 1 2 3 24 24 H 1.09008 * 109.46843 * 47.80405 * 1 2 3 25 25 H 1.09001 * 109.46983 * 167.79898 * 1 2 3 26 26 H 1.08996 * 109.47600 * 239.99522 * 2 1 3 27 27 H 1.09003 * 109.46697 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46993 * 299.99432 * 3 2 1 29 29 H 1.08996 * 109.47291 * 59.99883 * 3 2 1 30 30 H 1.08994 * 109.47344 * 38.38542 * 5 4 2 31 31 H 1.08998 * 109.46739 * 158.38125 * 5 4 2 32 32 H 0.96996 * 119.99845 * 179.97438 * 9 8 6 33 33 H 1.08998 * 113.61236 * 105.38281 * 16 14 4 34 34 H 1.09001 * 113.60962 * 334.48392 * 16 14 4 35 35 H 1.00895 * 111.00626 * 79.50230 * 19 17 16 36 36 H 1.00902 * 110.99879 * 203.45845 * 19 17 16 37 37 H 1.09000 * 109.47300 * 89.93848 * 21 20 17 38 38 H 1.09011 * 109.46830 * 209.93123 * 21 20 17 39 39 H 1.09000 * 109.47617 * 329.93246 * 21 20 17 40 40 H 1.08996 * 109.47507 * 40.49320 * 22 20 17 41 41 H 1.08997 * 109.47072 * 160.50162 * 22 20 17 42 42 H 1.09000 * 109.46537 * 280.49363 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.4545 -2.0451 1.2940 6 6 0.0704 -1.9711 1.8853 7 1 -0.3119 -1.0287 2.2488 8 6 -0.7080 -3.1066 1.9623 9 7 -0.2426 -4.2541 1.5193 10 14 -2.4240 -3.0147 2.6946 11 1 -3.4051 -2.7156 1.6207 12 1 -2.7629 -4.3153 3.3264 13 1 -2.4683 -1.9405 3.7189 14 6 3.4879 -0.7325 1.2218 15 1 3.9423 0.1245 0.7247 16 6 4.0741 -2.0835 0.7791 17 6 5.1098 -1.9132 1.9031 18 1 6.0076 -1.3791 1.5921 19 7 5.4061 -3.1585 2.6237 20 6 4.0771 -1.0216 2.6126 21 6 3.1287 -1.7944 3.5314 22 6 4.6892 0.2080 3.2865 23 1 -0.3634 0.3142 0.9784 24 1 -0.3633 0.6903 -0.7614 25 1 -0.3633 -1.0045 -0.2172 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.4015 -2.4870 0.2991 31 1 2.0896 -2.6604 1.9314 32 1 -0.7900 -5.0530 1.5738 33 1 4.5076 -2.0648 -0.2207 34 1 3.3975 -2.9243 0.9326 35 1 6.0492 -3.7344 2.1014 36 1 5.7623 -2.9655 3.5479 37 1 3.5558 -1.8473 4.5328 38 1 2.1667 -1.2833 3.5733 39 1 2.9877 -2.8029 3.1428 40 1 5.4599 0.6300 2.6417 41 1 3.9119 0.9524 3.4589 42 1 5.1316 -0.0826 4.2394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405258737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:29 Heat of formation + Delta-G solvation = 15.681975 kcal Electronic energy + Delta-G solvation = -19226.097337 eV Core-core repulsion = 16627.389195 eV Total energy + Delta-G solvation = -2598.708142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52620 -37.72593 -34.70412 -33.27137 -32.08419 -30.98314 -29.01392 -28.06291 -27.19737 -24.63995 -23.33637 -22.78140 -20.49208 -18.83685 -18.44687 -16.86974 -16.69334 -16.56146 -15.97162 -15.76791 -15.40557 -14.63514 -14.33137 -14.18743 -13.88138 -13.56643 -13.29380 -13.14444 -12.86762 -12.82677 -12.64153 -12.58547 -12.54191 -12.23442 -12.06757 -11.87497 -11.77437 -11.49698 -11.07279 -11.01848 -10.81864 -10.70569 -10.29560 -9.45146 -8.74104 -8.03622 -6.06469 1.41562 1.42549 1.52879 2.47269 3.27110 3.30893 3.67395 3.76051 3.86345 4.07830 4.12126 4.30151 4.37016 4.53141 4.57973 4.64631 4.73288 4.81623 4.96283 4.97671 5.04000 5.07527 5.14499 5.17946 5.21008 5.29127 5.31597 5.41845 5.46735 5.55676 5.62418 5.66981 5.75545 5.86021 5.93453 6.32036 6.45129 6.66024 6.74433 6.88071 7.07178 7.57163 9.05593 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.009538 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.088086 B = 2934.835800 C = 3619.365457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.080 3.920 3 C -0.130 4.130 4 N -0.518 5.518 5 C 0.198 3.802 6 C -0.486 4.486 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.937 5.937 10 Si 0.948 3.052 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.266 1.266 14 C 0.061 3.939 15 H 0.110 0.890 16 C -0.174 4.174 17 C 0.082 3.918 18 H 0.077 0.923 19 N -0.844 5.844 20 C -0.060 4.060 21 C -0.102 4.102 22 C -0.125 4.125 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.009 0.991 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.058 0.942 30 H -0.053 1.053 31 H 0.048 0.952 32 H 0.257 0.743 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.344 0.656 36 H 0.347 0.653 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.118 9.184 0.281 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 C -0.188 4.188 4 N -0.241 5.241 5 C 0.073 3.927 6 C -0.525 4.525 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.580 5.580 10 Si 0.775 3.225 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.190 1.190 14 C -0.049 4.049 15 H 0.127 0.873 16 C -0.214 4.214 17 C -0.029 4.029 18 H 0.095 0.905 19 N -0.376 5.376 20 C -0.062 4.062 21 C -0.159 4.159 22 C -0.182 4.182 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.077 0.923 30 H -0.035 1.035 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.110 9.148 0.602 13.647 hybrid contribution 0.006 -0.907 -0.613 1.095 sum 10.115 8.240 -0.011 13.047 Atomic orbital electron populations 1.21805 0.94982 1.00335 1.00977 1.21550 0.95685 0.95384 0.90236 1.21821 1.00834 0.93932 1.02178 1.62093 1.05380 1.19464 1.37192 1.19864 0.94575 0.85187 0.93110 1.21526 0.99902 0.94065 1.36958 0.92188 1.25699 1.01774 0.95320 0.96973 1.70098 1.38462 0.99872 1.49520 0.85693 0.80865 0.77218 0.78745 1.20500 1.21481 1.19043 1.23360 0.88333 0.96113 0.97059 0.87280 1.23781 0.99527 1.00222 0.97829 1.22728 0.95186 0.90603 0.94432 0.90531 1.58643 1.53907 1.18022 1.06998 1.21914 0.94634 0.95311 0.94301 1.21365 0.98256 0.99250 0.97007 1.21663 1.00126 0.96148 1.00299 0.92876 0.92315 0.94883 0.97308 0.92012 0.91231 0.92297 1.03501 0.93476 0.93464 0.92618 0.91416 0.84259 0.83871 0.93574 0.93430 0.93751 0.91444 0.92830 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 7.77 71.98 0.56 -4.46 16 2 C 0.08 3.05 2.53 44.92 0.11 3.16 16 3 C -0.13 -3.72 9.07 71.98 0.65 -3.06 16 4 N -0.52 -21.70 3.81 -847.32 -3.23 -24.92 16 5 C 0.20 10.29 1.89 85.55 0.16 10.45 16 6 C -0.49 -27.03 6.37 25.60 0.16 -26.87 16 7 H 0.06 3.33 6.22 -2.91 -0.02 3.31 16 8 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 9 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 10 Si 0.95 45.50 29.54 68.60 2.03 47.53 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.06 2.12 3.27 45.45 0.15 2.27 16 15 H 0.11 3.25 5.76 -2.39 -0.01 3.24 16 16 C -0.17 -6.27 6.73 31.12 0.21 -6.06 16 17 C 0.08 2.34 4.37 45.44 0.20 2.54 16 18 H 0.08 1.80 8.01 -2.39 -0.02 1.78 16 19 N -0.84 -23.02 8.40 -166.50 -1.40 -24.42 16 20 C -0.06 -1.90 1.34 -51.65 -0.07 -1.97 16 21 C -0.10 -3.94 6.98 71.98 0.50 -3.44 16 22 C -0.13 -3.07 9.14 71.98 0.66 -2.41 16 23 H 0.05 2.26 6.56 -2.39 -0.02 2.25 16 24 H 0.06 1.96 8.09 -2.38 -0.02 1.94 16 25 H 0.03 1.57 6.63 -2.39 -0.02 1.56 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.06 1.57 6.08 -2.39 -0.01 1.55 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H -0.05 -3.16 7.80 -2.39 -0.02 -3.18 16 31 H 0.05 2.60 2.85 -2.39 -0.01 2.59 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 3.11 5.25 -2.39 -0.01 3.10 16 35 H 0.34 8.02 9.08 -89.70 -0.81 7.21 16 36 H 0.35 8.08 9.08 -89.69 -0.81 7.26 16 37 H 0.05 1.56 8.08 -2.39 -0.02 1.55 16 38 H 0.05 2.13 6.70 -2.38 -0.02 2.11 16 39 H 0.04 2.03 5.26 -2.39 -0.01 2.01 16 40 H 0.07 1.36 8.01 -2.39 -0.02 1.34 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 Total: -1.00 -64.21 307.88 0.83 -63.38 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.62 Total: 25.11 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 3.76 Total: -29.46 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.34 Total: -106.56 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -64.21 0.83 -63.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405258737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.060 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds