Wall clock time and date at job start Mon Mar 30 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 N 1.46901 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.46847 * 111.00144 * 170.00079 * 4 3 2 6 6 C 1.53044 * 109.51335 * 185.83239 * 5 4 3 7 7 C 1.53117 * 109.27792 * 300.82256 * 6 5 4 8 8 C 1.52997 * 109.52353 * 177.62341 * 7 6 5 9 9 N 1.46895 * 109.47451 * 174.99940 * 8 7 6 10 10 C 1.46892 * 111.00337 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47504 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99268 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00206 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00056 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47020 * 60.00784 * 15 13 11 17 17 H 1.48494 * 109.47210 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47366 * 300.00807 * 15 13 11 19 19 C 1.53127 * 109.15989 * 57.65607 * 7 6 5 20 20 C 1.46830 * 110.98168 * 294.21498 * 4 3 2 21 21 H 1.09002 * 109.47534 * 300.00388 * 1 2 3 22 22 H 1.08998 * 109.47460 * 59.99964 * 1 2 3 23 23 H 1.08999 * 109.47587 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47238 * 240.00072 * 2 1 3 25 25 H 1.08998 * 109.47460 * 120.00036 * 2 1 3 26 26 H 1.09001 * 109.47466 * 60.00169 * 3 2 1 27 27 H 1.09002 * 109.47083 * 299.99583 * 3 2 1 28 28 H 1.09002 * 109.46448 * 65.81961 * 5 4 3 29 29 H 1.08994 * 109.45958 * 305.84326 * 5 4 3 30 30 H 1.09001 * 109.49858 * 60.76701 * 6 5 4 31 31 H 1.09000 * 109.49965 * 180.88251 * 6 5 4 32 32 H 1.09004 * 109.52347 * 297.75632 * 7 6 5 33 33 H 1.09000 * 109.47057 * 295.00760 * 8 7 6 34 34 H 1.09004 * 109.46920 * 54.99752 * 8 7 6 35 35 H 1.00907 * 110.99778 * 56.04804 * 9 8 7 36 36 H 1.09007 * 109.46890 * 300.00208 * 10 9 8 37 37 H 1.08997 * 109.47172 * 60.00121 * 10 9 8 38 38 H 0.97001 * 119.99853 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.50037 * 62.28538 * 19 7 6 40 40 H 1.09000 * 109.49970 * 182.40199 * 19 7 6 41 41 H 1.08995 * 109.46742 * 54.13906 * 20 4 3 42 42 H 1.09004 * 109.45381 * 294.16241 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0351 2.7926 -0.2387 6 6 5.5580 2.7307 -0.3773 7 6 6.1589 2.1470 0.9044 8 6 7.6763 2.0274 0.7493 9 7 8.2647 1.5807 2.0191 10 6 9.7239 1.4549 1.9078 11 6 10.2907 0.9952 3.2263 12 1 9.6324 0.8142 4.0632 13 6 11.6492 0.8048 3.3640 14 7 12.4507 1.0248 2.3448 15 14 12.3517 0.2357 4.9986 16 1 11.7668 -1.0814 5.3570 17 1 13.8269 0.1084 4.8860 18 1 12.0198 1.2279 6.0524 19 6 5.5581 0.7610 1.1553 20 6 4.0352 0.8800 1.2494 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.7727 3.4378 0.5998 29 1 3.6031 3.1944 -1.1552 30 1 5.8208 2.0967 -1.2241 31 1 5.9499 3.7350 -0.5383 32 1 5.9291 2.8013 1.7454 33 1 7.9057 1.3030 -0.0322 34 1 8.0914 2.9981 0.4781 35 1 7.8490 0.7136 2.3249 36 1 9.9679 0.7267 1.1341 37 1 10.1529 2.4218 1.6449 38 1 13.4065 0.8912 2.4417 39 1 5.8210 0.0961 0.3326 40 1 5.9501 0.3581 2.0892 41 1 3.6033 -0.1071 1.4137 42 1 3.7728 1.5343 2.0808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574072142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:38 Heat of formation + Delta-G solvation = -24.309693 kcal Electronic energy + Delta-G solvation = -17356.331759 eV Core-core repulsion = 14755.889448 eV Total energy + Delta-G solvation = -2600.442311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.28962 -36.24729 -34.33984 -32.70841 -31.43327 -30.77455 -27.77011 -25.92054 -24.10126 -23.34498 -21.85093 -20.98381 -20.75245 -19.46626 -16.48295 -16.02599 -15.62491 -14.91798 -14.71895 -14.54718 -14.25824 -13.84202 -13.65090 -13.23356 -13.07129 -12.53707 -12.40671 -12.32944 -11.83999 -11.77177 -11.43664 -11.25644 -11.09358 -11.07376 -10.84583 -10.78946 -10.69405 -10.30546 -10.22879 -9.95792 -9.72830 -9.12290 -8.45032 -8.36417 -7.22854 -6.00378 -4.02412 3.35233 3.38841 3.42089 3.80664 4.45042 4.66541 4.81564 4.88780 4.94402 5.02959 5.13828 5.26312 5.33387 5.35224 5.37716 5.46940 5.52871 5.56944 5.62519 5.74465 5.77861 5.84199 5.87059 5.92764 6.00177 6.09023 6.14068 6.26225 6.31606 6.36275 6.55547 6.72348 7.06492 7.07957 7.31139 7.47088 7.81661 8.17093 8.45243 8.66939 9.06920 9.62368 11.10785 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044922 B = 0.003737 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.151556 B = 7491.636060 C = 7925.618775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.059 3.941 6 C -0.111 4.111 7 C -0.086 4.086 8 C 0.065 3.935 9 N -0.691 5.691 10 C 0.194 3.806 11 C -0.514 4.514 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.113 4.113 20 C 0.056 3.944 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.327 0.673 36 H -0.015 1.015 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.172 0.503 -5.830 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.073 4.073 4 N -0.265 5.265 5 C -0.069 4.069 6 C -0.149 4.149 7 C -0.105 4.105 8 C -0.065 4.065 9 N -0.322 5.322 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.150 4.150 20 C -0.072 4.072 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.003 0.997 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.770 0.848 -5.999 21.635 hybrid contribution 0.350 -0.539 0.936 1.135 sum -20.420 0.308 -5.063 21.041 Atomic orbital electron populations 1.21738 0.95814 1.01686 1.01631 1.21554 0.95145 0.96554 1.02801 1.22125 0.87597 0.97107 1.00451 1.61950 1.06719 1.22211 1.35573 1.22063 0.96027 0.88732 1.00074 1.21611 0.93538 1.01111 0.98640 1.21224 0.95233 0.96578 0.97422 1.21885 0.92596 0.99799 0.92189 1.60692 1.08047 1.36217 1.27274 1.19536 0.81352 0.96088 0.96326 1.21168 0.92087 1.44681 0.97375 0.92066 1.24995 0.97065 0.95689 0.96864 1.69958 1.03946 1.49469 1.30445 0.86539 0.77660 0.79204 0.83866 1.20258 1.21346 1.20170 1.21650 0.93399 0.97645 1.02355 1.22141 0.96084 0.99416 0.89550 0.92944 0.92779 0.92593 0.91147 0.91866 0.95195 0.91092 0.95097 0.91176 0.91254 0.91536 0.90937 0.96423 0.91988 0.85593 0.99696 0.95531 0.92877 0.91487 0.90922 0.90804 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.15 0.37 -0.69 16 2 C -0.12 -1.05 5.86 -26.73 -0.16 -1.21 16 3 C 0.06 0.52 4.96 -3.82 -0.02 0.50 16 4 N -0.54 -6.18 4.66 -234.68 -1.09 -7.27 16 5 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 6 C -0.11 -1.38 5.38 -26.65 -0.14 -1.53 16 7 C -0.09 -1.26 2.46 -90.50 -0.22 -1.48 16 8 C 0.07 1.20 5.15 -3.83 -0.02 1.18 16 9 N -0.69 -15.26 6.49 -115.06 -0.75 -16.01 16 10 C 0.19 5.24 5.44 -4.98 -0.03 5.21 16 11 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 15 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.11 -1.55 5.10 -26.65 -0.14 -1.68 16 20 C 0.06 0.67 5.29 -3.84 -0.02 0.64 16 21 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 26 H 0.03 0.29 8.12 -51.93 -0.42 -0.14 16 27 H 0.07 0.62 7.99 -51.93 -0.41 0.21 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.33 6.87 7.05 -39.29 -0.28 6.59 16 36 H -0.01 -0.42 8.14 -51.93 -0.42 -0.85 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.04 6.81 -51.93 -0.35 0.69 16 41 H 0.07 0.82 6.21 -51.93 -0.32 0.49 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -30.15 325.81 -10.03 -40.18 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.00 Total: -0.02 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.82 Total: -12.14 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -1.10 Total: -49.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.15 -10.03 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574072142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.871 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds