Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 N 1.46901 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.46847 * 111.00144 * 170.00079 * 4 3 2 6 6 C 1.53044 * 109.51335 * 185.83239 * 5 4 3 7 7 C 1.53117 * 109.27792 * 300.82256 * 6 5 4 8 8 C 1.52997 * 109.52353 * 177.62341 * 7 6 5 9 9 N 1.46895 * 109.47451 * 174.99940 * 8 7 6 10 10 C 1.46892 * 111.00337 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47504 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99268 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00206 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00056 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47020 * 60.00784 * 15 13 11 17 17 H 1.48494 * 109.47210 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47366 * 300.00807 * 15 13 11 19 19 C 1.53127 * 109.15989 * 57.65607 * 7 6 5 20 20 C 1.46830 * 110.98168 * 294.21498 * 4 3 2 21 21 H 1.09002 * 109.47534 * 300.00388 * 1 2 3 22 22 H 1.08998 * 109.47460 * 59.99964 * 1 2 3 23 23 H 1.08999 * 109.47587 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47238 * 240.00072 * 2 1 3 25 25 H 1.08998 * 109.47460 * 120.00036 * 2 1 3 26 26 H 1.09001 * 109.47466 * 60.00169 * 3 2 1 27 27 H 1.09002 * 109.47083 * 299.99583 * 3 2 1 28 28 H 1.09002 * 109.46448 * 65.81961 * 5 4 3 29 29 H 1.08994 * 109.45958 * 305.84326 * 5 4 3 30 30 H 1.09001 * 109.49858 * 60.76701 * 6 5 4 31 31 H 1.09000 * 109.49965 * 180.88251 * 6 5 4 32 32 H 1.09004 * 109.52347 * 297.75632 * 7 6 5 33 33 H 1.09000 * 109.47057 * 295.00760 * 8 7 6 34 34 H 1.09004 * 109.46920 * 54.99752 * 8 7 6 35 35 H 1.00907 * 110.99778 * 56.04804 * 9 8 7 36 36 H 1.09007 * 109.46890 * 300.00208 * 10 9 8 37 37 H 1.08997 * 109.47172 * 60.00121 * 10 9 8 38 38 H 0.97001 * 119.99853 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.50037 * 62.28538 * 19 7 6 40 40 H 1.09000 * 109.49970 * 182.40199 * 19 7 6 41 41 H 1.08995 * 109.46742 * 54.13906 * 20 4 3 42 42 H 1.09004 * 109.45381 * 294.16241 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0351 2.7926 -0.2387 6 6 5.5580 2.7307 -0.3773 7 6 6.1589 2.1470 0.9044 8 6 7.6763 2.0274 0.7493 9 7 8.2647 1.5807 2.0191 10 6 9.7239 1.4549 1.9078 11 6 10.2907 0.9952 3.2263 12 1 9.6324 0.8142 4.0632 13 6 11.6492 0.8048 3.3640 14 7 12.4507 1.0248 2.3448 15 14 12.3517 0.2357 4.9986 16 1 11.7668 -1.0814 5.3570 17 1 13.8269 0.1084 4.8860 18 1 12.0198 1.2279 6.0524 19 6 5.5581 0.7610 1.1553 20 6 4.0352 0.8800 1.2494 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.7727 3.4378 0.5998 29 1 3.6031 3.1944 -1.1552 30 1 5.8208 2.0967 -1.2241 31 1 5.9499 3.7350 -0.5383 32 1 5.9291 2.8013 1.7454 33 1 7.9057 1.3030 -0.0322 34 1 8.0914 2.9981 0.4781 35 1 7.8490 0.7136 2.3249 36 1 9.9679 0.7267 1.1341 37 1 10.1529 2.4218 1.6449 38 1 13.4065 0.8912 2.4417 39 1 5.8210 0.0961 0.3326 40 1 5.9501 0.3581 2.0892 41 1 3.6033 -0.1071 1.4137 42 1 3.7728 1.5343 2.0808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574072142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = -44.111545 kcal Electronic energy + Delta-G solvation = -17357.190432 eV Core-core repulsion = 14755.889448 eV Total energy + Delta-G solvation = -2601.300984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30819 -37.62195 -35.74123 -34.43124 -32.77308 -31.77760 -29.38160 -27.33592 -25.34861 -24.39564 -23.55043 -22.37450 -21.62093 -20.58799 -18.59446 -17.08741 -16.80422 -16.48795 -16.19843 -15.57367 -15.34758 -15.17268 -14.94173 -14.56318 -14.25437 -14.04876 -13.61143 -13.33723 -13.20835 -13.01884 -12.83701 -12.62890 -12.51211 -12.36053 -12.11415 -12.04127 -11.91147 -11.66083 -11.53265 -11.45205 -11.04551 -10.95547 -10.66692 -9.24147 -9.13154 -8.23479 -6.35523 1.40680 1.44832 1.52877 2.39636 2.95703 3.09478 3.53325 3.81293 3.86128 3.98149 4.11927 4.22132 4.32631 4.40783 4.45591 4.52523 4.57750 4.66664 4.71491 4.74508 4.81285 4.87338 4.92831 4.97155 4.98018 5.09232 5.11544 5.18269 5.24904 5.27235 5.30858 5.33604 5.44004 5.51803 5.61402 6.00836 6.17120 6.22446 6.43959 6.71646 6.88046 7.35700 8.88190 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044922 B = 0.003737 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.151556 B = 7491.636060 C = 7925.618775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.550 5.550 5 C 0.062 3.938 6 C -0.106 4.106 7 C -0.075 4.075 8 C 0.067 3.933 9 N -0.689 5.689 10 C 0.208 3.792 11 C -0.539 4.539 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.110 4.110 20 C 0.062 3.938 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.055 0.945 35 H 0.334 0.666 36 H -0.042 1.042 37 H -0.002 1.002 38 H 0.266 0.734 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.680 0.297 -5.126 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.275 5.275 5 C -0.066 4.066 6 C -0.144 4.144 7 C -0.094 4.094 8 C -0.063 4.063 9 N -0.320 5.320 10 C 0.080 3.920 11 C -0.577 4.577 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.148 4.148 20 C -0.066 4.066 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.152 0.848 36 H -0.024 1.024 37 H 0.016 0.984 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -22.312 0.643 -5.304 22.943 hybrid contribution 0.801 -0.456 0.651 1.128 sum -21.511 0.187 -4.653 22.010 Atomic orbital electron populations 1.21708 0.94521 1.02204 1.02080 1.21528 0.96245 0.95857 1.02180 1.22183 0.86197 0.97779 1.00998 1.61960 1.08070 1.22339 1.35104 1.22049 0.94725 0.88791 1.01024 1.21567 0.94751 1.01199 0.96913 1.21116 0.92358 0.97378 0.98585 1.21965 0.95095 0.98940 0.90286 1.60583 1.05411 1.36544 1.29457 1.19197 0.84224 0.93519 0.95069 1.21532 0.92850 1.45267 0.98048 0.91670 1.26001 0.97373 0.95385 1.01060 1.70093 1.04417 1.50115 1.32898 0.85341 0.76899 0.79153 0.78637 1.18940 1.20704 1.19258 1.21594 0.94987 0.96649 1.01545 1.22043 0.94483 1.00104 0.89929 0.92648 0.92167 0.92088 0.91852 0.92388 0.94999 0.90099 0.94965 0.89401 0.91703 0.90774 0.91521 0.96913 0.92687 0.84762 1.02400 0.98406 0.92546 0.92202 0.91815 0.89829 0.95162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.85 5.86 30.59 0.18 -1.67 16 3 C 0.06 0.94 4.96 86.30 0.43 1.36 16 4 N -0.55 -11.56 4.66 -896.39 -4.17 -15.73 16 5 C 0.06 1.26 5.46 86.33 0.47 1.73 16 6 C -0.11 -2.52 5.38 30.65 0.16 -2.36 16 7 C -0.08 -2.18 2.46 -10.71 -0.03 -2.21 16 8 C 0.07 2.49 5.15 86.30 0.44 2.93 16 9 N -0.69 -31.01 6.49 -517.95 -3.36 -34.37 16 10 C 0.21 11.63 5.44 85.56 0.47 12.09 16 11 C -0.54 -31.64 9.32 25.60 0.24 -31.40 16 12 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 13 C 0.00 0.00 5.46 84.65 0.46 0.46 16 14 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 15 Si 0.98 44.88 29.54 68.60 2.03 46.91 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C -0.11 -2.95 5.10 30.65 0.16 -2.80 16 20 C 0.06 1.40 5.29 86.33 0.46 1.85 16 21 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 0.94 6.43 -2.39 -0.02 0.93 16 26 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 27 H 0.08 1.21 7.99 -2.39 -0.02 1.19 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.33 14.22 7.05 -89.69 -0.63 13.59 16 36 H -0.04 -2.50 8.14 -2.38 -0.02 -2.52 16 37 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.81 6.81 -2.39 -0.02 1.79 16 41 H 0.08 1.72 6.21 -2.39 -0.01 1.71 16 42 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -64.40 325.81 -0.75 -65.15 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.32 Total: 16.53 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 4.15 Total: -21.04 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -7.25 Total: -107.55 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.40 -0.75 -65.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574072142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.041 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds