Wall clock time and date at job start Mon Mar 30 2020 04:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47342 * 2 1 4 4 N 1.46901 * 109.47276 * 119.99818 * 2 1 3 5 5 C 1.46893 * 111.00225 * 169.83073 * 4 2 1 6 6 C 1.50704 * 109.47264 * 293.95654 * 5 4 2 7 7 H 1.07995 * 119.99605 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99579 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00829 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99522 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47048 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47167 * 119.99869 * 10 8 6 13 13 H 1.48501 * 109.46696 * 239.99537 * 10 8 6 14 14 C 1.46896 * 111.00034 * 293.78878 * 4 2 1 15 15 C 1.52998 * 109.47442 * 164.12071 * 14 4 2 16 16 H 1.09000 * 110.28690 * 55.27455 * 15 14 4 17 17 C 1.54259 * 110.32940 * 177.40498 * 15 14 4 18 18 C 1.54378 * 105.06297 * 118.89495 * 17 15 14 19 19 N 1.48556 * 104.59337 * 23.85401 * 18 17 15 20 20 C 1.46900 * 111.00155 * 200.95635 * 19 18 17 21 21 C 1.48562 * 104.22468 * 320.51559 * 19 18 17 22 22 H 1.08999 * 109.46711 * 65.85430 * 1 2 3 23 23 H 1.09000 * 109.46949 * 305.85836 * 1 2 3 24 24 H 1.08993 * 109.47231 * 185.85774 * 1 2 3 25 25 H 1.09003 * 109.47298 * 239.99625 * 2 1 3 26 26 H 1.08993 * 109.47112 * 59.99702 * 3 2 1 27 27 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46788 * 299.99631 * 3 2 1 29 29 H 1.09005 * 109.47186 * 53.95569 * 5 4 2 30 30 H 1.09004 * 109.47309 * 173.95796 * 5 4 2 31 31 H 0.96995 * 120.00176 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47358 * 284.12367 * 14 4 2 33 33 H 1.09004 * 109.47607 * 44.12316 * 14 4 2 34 34 H 1.09004 * 110.32336 * 237.79556 * 17 15 14 35 35 H 1.09005 * 110.31908 * 359.97438 * 17 15 14 36 36 H 1.08999 * 110.40712 * 142.63570 * 18 17 15 37 37 H 1.09001 * 110.41027 * 264.96185 * 18 17 15 38 38 H 1.08999 * 109.46630 * 60.12643 * 20 19 18 39 39 H 1.08999 * 109.47355 * 180.12612 * 20 19 18 40 40 H 1.09001 * 109.47326 * 300.12822 * 20 19 18 41 41 H 1.08993 * 110.41074 * 280.70670 * 21 19 18 42 42 H 1.09004 * 110.41072 * 158.25722 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4678 -0.9253 1.1186 6 6 3.7592 -1.8938 0.0013 7 1 2.9496 -2.2964 -0.5892 8 6 5.0594 -2.2667 -0.2661 9 7 6.0453 -1.7769 0.4534 10 14 5.4207 -3.4667 -1.6514 11 1 4.1483 -3.8671 -2.3039 12 1 6.3069 -2.8171 -2.6504 13 1 6.0943 -4.6701 -1.1007 14 6 1.6736 0.0540 2.4164 15 6 1.8339 -0.8560 3.6358 16 1 2.8407 -1.2726 3.6669 17 6 1.5378 -0.0730 4.9315 18 6 0.3340 -0.7971 5.5717 19 7 0.3915 -2.1762 5.0225 20 6 -0.9160 -2.8381 5.1238 21 6 0.7840 -1.9875 3.6022 22 1 -0.3633 0.4204 -0.9378 23 1 -0.3633 0.6020 0.8329 24 1 -0.3633 -1.0222 0.1049 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.9772 0.0184 0.9235 30 1 3.8222 -1.3414 2.0617 31 1 6.9600 -2.0389 0.2650 32 1 2.3356 0.9143 2.5156 33 1 0.6407 0.3960 2.3516 34 1 2.3987 -0.1066 5.5993 35 1 1.2787 0.9599 4.6987 36 1 0.4347 -0.8154 6.6568 37 1 -0.5984 -0.3105 5.2853 38 1 -1.6556 -2.2698 4.5598 39 1 -0.8452 -3.8468 4.7168 40 1 -1.2175 -2.8889 6.1701 41 1 -0.0781 -1.6885 3.0060 42 1 1.2236 -2.9022 3.2045 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686005901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:43 Heat of formation + Delta-G solvation = 0.447589 kcal Electronic energy + Delta-G solvation = -18459.894154 eV Core-core repulsion = 15860.525399 eV Total energy + Delta-G solvation = -2599.368755 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.04812 -37.28339 -32.76450 -32.75151 -30.53856 -28.81544 -26.95552 -26.59179 -25.57396 -23.47658 -22.11377 -20.90447 -19.83143 -18.49464 -16.25303 -15.72956 -15.46669 -14.72668 -14.45379 -14.24491 -14.02110 -13.75210 -13.20122 -12.84600 -12.75250 -12.25415 -12.01984 -11.72754 -11.58886 -11.44975 -11.23335 -11.19839 -11.04961 -10.76328 -10.65467 -10.61540 -10.48210 -10.30918 -10.01540 -9.93164 -9.50666 -9.06648 -8.38644 -8.29001 -7.12105 -5.98724 -3.98951 3.32897 3.40625 3.45068 4.27647 4.45584 4.80842 4.96167 5.10725 5.30007 5.37082 5.50314 5.53344 5.55062 5.58620 5.74254 5.79031 5.91458 5.92801 5.96838 6.05359 6.06001 6.08960 6.15556 6.26267 6.30277 6.31534 6.38947 6.54201 6.59774 6.81146 6.83645 6.92187 7.08596 7.23993 7.40355 7.48058 7.86277 8.18175 8.30007 8.62647 9.09235 9.64914 11.12143 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.006962 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.367496 B = 4021.102081 C = 4511.428934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 C -0.180 4.180 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.062 3.938 15 C -0.086 4.086 16 H 0.086 0.914 17 C -0.121 4.121 18 C 0.034 3.966 19 N -0.523 5.523 20 C 0.016 3.984 21 C 0.056 3.944 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.046 0.954 29 H -0.007 1.007 30 H 0.032 0.968 31 H 0.259 0.741 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.843 3.806 6.193 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.239 4.239 4 N -0.252 5.252 5 C 0.065 3.935 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.066 4.066 15 C -0.105 4.105 16 H 0.104 0.896 17 C -0.159 4.159 18 C -0.095 4.095 19 N -0.246 5.246 20 C -0.133 4.133 21 C -0.071 4.071 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.011 0.989 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.515 2.976 6.523 13.565 hybrid contribution 0.159 0.665 -1.189 1.371 sum -11.356 3.641 5.335 13.064 Atomic orbital electron populations 1.21866 0.96401 1.01506 0.99995 1.21566 0.93456 0.91941 0.95823 1.22430 1.02453 0.98654 1.00363 1.62320 1.18865 1.44570 0.99420 1.19779 0.80562 0.95477 0.97723 1.21203 0.92041 1.25445 1.15454 0.91967 1.24968 0.96316 0.96619 0.96683 1.69963 0.99400 1.44478 1.40012 0.86510 0.78249 0.81001 0.82071 1.19723 1.21231 1.21079 1.22131 0.99158 0.94359 0.91002 1.21895 1.00571 0.95115 0.92950 0.89556 1.22357 0.97823 0.98623 0.97145 1.23073 0.97419 0.89272 0.99692 1.65396 1.26510 1.16455 1.16275 1.22455 0.89972 0.99683 1.01168 1.23009 0.97341 0.99716 0.87077 0.93420 0.93811 0.92336 0.89060 0.93664 0.91915 0.93482 0.98888 0.94987 0.93087 0.95604 0.92319 0.91237 0.91678 0.90811 0.94392 0.95731 0.91356 0.91925 0.93854 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.02 37.16 0.34 -1.83 16 2 C 0.08 1.53 2.78 -67.71 -0.19 1.34 16 3 C -0.18 -3.16 8.49 37.16 0.32 -2.84 16 4 N -0.53 -10.90 4.21 -228.08 -0.96 -11.86 16 5 C 0.19 4.80 4.45 -4.98 -0.02 4.78 16 6 C -0.50 -13.90 8.37 -34.44 -0.29 -14.19 16 7 H 0.06 1.72 7.18 -52.49 -0.38 1.34 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.06 1.10 2.80 -3.83 -0.01 1.09 16 15 C -0.09 -1.46 3.09 -89.24 -0.28 -1.73 16 16 H 0.09 1.72 6.51 -51.93 -0.34 1.38 16 17 C -0.12 -1.68 6.65 -25.35 -0.17 -1.85 16 18 C 0.03 0.43 6.49 -2.19 -0.01 0.42 16 19 N -0.52 -7.69 5.66 -238.23 -1.35 -9.03 16 20 C 0.02 0.20 9.53 60.06 0.57 0.77 16 21 C 0.06 0.92 5.86 -2.18 -0.01 0.90 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.63 6.54 -51.93 -0.34 0.29 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.09 1.94 6.64 -51.93 -0.35 1.60 16 26 H 0.04 0.73 6.69 -51.93 -0.35 0.38 16 27 H 0.06 1.26 6.58 -51.93 -0.34 0.91 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H -0.01 -0.18 6.41 -51.93 -0.33 -0.51 16 30 H 0.03 0.88 6.36 -51.93 -0.33 0.55 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.03 0.47 7.13 -51.93 -0.37 0.10 16 33 H 0.06 0.95 5.95 -51.93 -0.31 0.64 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.46 7.98 -51.93 -0.41 0.05 16 38 H 0.02 0.28 7.97 -51.93 -0.41 -0.13 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.70 7.55 -51.93 -0.39 0.31 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -28.82 317.65 -9.23 -38.05 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.57 Total: -1.01 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 0.15 Total: -11.68 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -1.57 Total: -46.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.82 -9.23 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686005901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.497 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds