Wall clock time and date at job start Mon Mar 30 2020 04:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 N 1.46501 * 109.47140 * 180.31732 * 3 2 1 5 5 C 1.36934 * 120.00113 * 84.82191 * 4 3 2 6 6 H 1.07999 * 119.99938 * 319.81958 * 5 4 3 7 7 C 1.38813 * 119.99701 * 139.82324 * 5 4 3 8 8 N 1.31624 * 120.00001 * 156.94101 * 7 5 4 9 9 Si 1.86794 * 120.00154 * 336.94101 * 7 5 4 10 10 H 1.48503 * 109.47480 * 94.19518 * 9 7 5 11 11 H 1.48502 * 109.47375 * 214.19809 * 9 7 5 12 12 H 1.48502 * 109.47023 * 334.19489 * 9 7 5 13 13 C 1.46505 * 119.99601 * 264.81922 * 4 3 2 14 14 C 1.52995 * 109.47063 * 89.99904 * 13 4 3 15 15 H 1.09003 * 109.50758 * 305.00614 * 14 13 4 16 16 C 1.53111 * 109.50533 * 184.92003 * 14 13 4 17 17 C 1.53129 * 109.15966 * 182.44491 * 16 14 13 18 18 C 1.53028 * 109.30713 * 57.59943 * 17 16 14 19 19 N 1.46847 * 109.52610 * 300.83446 * 18 17 16 20 20 C 1.46895 * 111.00356 * 185.84039 * 19 18 17 21 21 C 1.46851 * 111.19311 * 61.74872 * 19 18 17 22 22 H 1.08993 * 109.47224 * 304.70696 * 1 2 3 23 23 H 1.09003 * 109.47406 * 64.71219 * 1 2 3 24 24 H 1.08999 * 109.46938 * 184.70837 * 1 2 3 25 25 H 1.09005 * 109.47114 * 240.00022 * 2 1 3 26 26 H 1.09000 * 109.47472 * 119.99832 * 2 1 3 27 27 H 1.09004 * 109.46913 * 300.31156 * 3 2 1 28 28 H 1.08996 * 109.47108 * 60.31073 * 3 2 1 29 29 H 0.96992 * 119.99630 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47249 * 210.00076 * 13 4 3 31 31 H 1.09000 * 109.47059 * 330.00646 * 13 4 3 32 32 H 1.08998 * 109.52687 * 302.31478 * 16 14 13 33 33 H 1.09003 * 109.52379 * 62.50153 * 16 14 13 34 34 H 1.08999 * 109.47130 * 297.65291 * 17 16 14 35 35 H 1.08999 * 109.50200 * 177.55637 * 17 16 14 36 36 H 1.09006 * 109.45983 * 180.82438 * 18 17 16 37 37 H 1.09000 * 109.46929 * 60.85402 * 18 17 16 38 38 H 1.08997 * 109.47534 * 295.79298 * 20 19 18 39 39 H 1.09003 * 109.47164 * 55.79570 * 20 19 18 40 40 H 1.09006 * 109.47081 * 175.79046 * 20 19 18 41 41 H 1.09001 * 109.46361 * 178.25024 * 21 19 18 42 42 H 1.08997 * 109.46698 * 58.27003 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0076 5 6 4.1835 1.3377 -1.1924 6 1 3.8307 0.6637 -1.9590 7 6 5.3249 2.0978 -1.4081 8 7 6.2186 1.7068 -2.2918 9 14 5.5924 3.6753 -0.4444 10 1 6.4192 3.3884 0.7554 11 1 6.2911 4.6666 -1.3014 12 1 4.2797 4.2253 -0.0208 13 6 4.2440 1.5548 1.2524 14 6 4.5019 0.1571 1.8186 15 1 3.5564 -0.3765 1.9156 16 6 5.1649 0.2768 3.1935 17 6 5.4749 -1.1252 3.7258 18 6 6.3734 -1.8582 2.7272 19 7 5.6935 -1.9475 1.4287 20 6 6.4668 -2.7651 0.4846 21 6 5.4287 -0.6133 0.8752 22 1 -0.3633 0.5851 0.8448 23 1 -0.3634 0.4390 -0.9292 24 1 -0.3633 -1.0242 0.0844 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6721 1.9579 -0.8872 28 1 1.6812 1.9547 0.8927 29 1 7.0159 2.2381 -2.4428 30 1 5.1955 2.0551 1.0722 31 1 3.6585 2.1337 1.9666 32 1 6.0909 0.8446 3.1033 33 1 4.4894 0.7867 3.8805 34 1 4.5449 -1.6792 3.8535 35 1 5.9863 -1.0453 4.6850 36 1 6.5837 -2.8619 3.0968 37 1 7.3088 -1.3109 2.6105 38 1 7.4193 -2.2774 0.2771 39 1 6.6489 -3.7479 0.9195 40 1 5.9059 -2.8767 -0.4434 41 1 4.9527 -0.7127 -0.1003 42 1 6.3685 -0.0718 0.7672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686006904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:42 Heat of formation + Delta-G solvation = 6.743155 kcal Electronic energy + Delta-G solvation = -18951.034898 eV Core-core repulsion = 16351.939139 eV Total energy + Delta-G solvation = -2599.095758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.70365 -36.27369 -33.40902 -32.73592 -31.39570 -30.07394 -26.32019 -25.90053 -25.46173 -22.34532 -22.17102 -20.81857 -20.07644 -19.07021 -16.68464 -15.56784 -14.96974 -14.58569 -14.36789 -14.05297 -13.98691 -13.76156 -13.10875 -13.01119 -12.48164 -12.28644 -12.16872 -11.95119 -11.77100 -11.61254 -11.20195 -11.02454 -10.90513 -10.65313 -10.62279 -10.48826 -10.35483 -10.00860 -9.78263 -9.74760 -9.49696 -9.31125 -8.42534 -7.77592 -6.67754 -5.99037 -3.39560 3.32255 3.47687 3.54100 4.48458 4.55105 4.97015 5.25016 5.30586 5.36913 5.47474 5.62904 5.68426 5.73743 5.80079 5.91228 5.95005 5.96114 6.03709 6.13002 6.21267 6.26241 6.30613 6.32586 6.38334 6.45187 6.47087 6.52553 6.59133 6.60695 6.68074 6.71824 6.93696 7.12119 7.21455 7.22530 7.69504 7.71475 8.10709 8.44039 9.05793 9.75409 10.20095 11.16351 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.011245 C = 0.008678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.247655 B = 2489.318861 C = 3225.960834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.149 3.851 4 N -0.606 5.606 5 C -0.261 4.261 6 H 0.076 0.924 7 C 0.041 3.959 8 N -0.897 5.897 9 Si 0.870 3.130 10 H -0.287 1.287 11 H -0.303 1.303 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.097 4.097 15 H 0.071 0.929 16 C -0.120 4.120 17 C -0.111 4.111 18 C 0.055 3.945 19 N -0.547 5.547 20 C 0.031 3.969 21 C 0.075 3.925 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -4.917 9.526 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.023 3.977 4 N -0.327 5.327 5 C -0.390 4.390 6 H 0.093 0.907 7 C -0.160 4.160 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.215 1.215 11 H -0.231 1.231 12 H -0.194 1.194 13 C 0.015 3.985 14 C -0.118 4.118 15 H 0.089 0.911 16 C -0.159 4.159 17 C -0.149 4.149 18 C -0.073 4.073 19 N -0.272 5.272 20 C -0.118 4.118 21 C -0.051 4.051 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.569 -5.084 9.471 11.326 hybrid contribution 1.210 1.279 0.364 1.798 sum -2.359 -3.805 9.835 10.806 Atomic orbital electron populations 1.21730 0.97473 1.00399 1.00908 1.22119 0.93567 1.00533 1.01933 1.20919 0.84364 0.93539 0.98833 1.44111 1.00289 1.86090 1.02231 1.18631 1.07533 1.19150 0.93642 0.90659 1.25494 0.96938 0.97421 0.96097 1.69887 1.09166 1.37989 1.36758 0.87021 0.77976 0.86085 0.78862 1.21508 1.23084 1.19446 1.21234 0.96112 0.93559 0.87569 1.21808 0.98633 0.98612 0.92747 0.91060 1.21672 1.00356 0.96187 0.97650 1.21528 0.99943 0.96473 0.96987 1.22039 0.95153 0.99206 0.90930 1.62033 1.45880 1.16340 1.02909 1.22252 0.96245 0.96578 0.96709 1.22108 0.97916 0.85699 0.99425 0.93556 0.93294 0.93776 0.92112 0.92655 0.93357 0.94820 0.92876 0.93037 0.94436 0.92819 0.92499 0.91520 0.92475 0.91848 0.95641 0.96044 0.92529 0.91236 0.87831 0.95701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.50 6.23 -26.73 -0.17 -2.67 16 3 C 0.15 2.95 5.72 -4.04 -0.02 2.92 16 4 N -0.61 -13.90 1.91 -173.24 -0.33 -14.23 16 5 C -0.26 -6.96 7.84 -15.06 -0.12 -7.07 16 6 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 7 C 0.04 1.15 5.27 -17.43 -0.09 1.06 16 8 N -0.90 -26.56 13.97 55.49 0.78 -25.78 16 9 Si 0.87 22.06 25.28 -169.99 -4.30 17.76 16 10 H -0.29 -7.13 6.63 56.52 0.37 -6.76 16 11 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.14 3.03 4.07 -4.04 -0.02 3.01 16 14 C -0.10 -1.85 2.56 -90.54 -0.23 -2.08 16 15 H 0.07 1.38 6.48 -51.93 -0.34 1.04 16 16 C -0.12 -1.96 5.29 -26.61 -0.14 -2.10 16 17 C -0.11 -1.60 6.09 -26.65 -0.16 -1.77 16 18 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 19 N -0.55 -9.83 4.91 -242.96 -1.19 -11.03 16 20 C 0.03 0.50 9.59 60.06 0.58 1.08 16 21 C 0.08 1.57 4.28 -3.83 -0.02 1.55 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.99 6.48 -51.93 -0.34 0.66 16 27 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.03 0.61 7.83 -51.93 -0.41 0.20 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.05 1.22 3.65 -51.93 -0.19 1.03 16 31 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.10 2.50 6.39 -51.93 -0.33 2.17 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -28.20 316.24 -8.25 -36.45 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.93 Total: -0.97 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.04 Total: -6.97 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.75 Total: -51.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.30 Total: 17.76 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.20 -8.25 -36.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686006904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.193 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds