Wall clock time and date at job start Mon Mar 30 2020 04:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 N 1.46501 * 109.47140 * 180.31732 * 3 2 1 5 5 C 1.36934 * 120.00113 * 84.82191 * 4 3 2 6 6 H 1.07999 * 119.99938 * 319.81958 * 5 4 3 7 7 C 1.38813 * 119.99701 * 139.82324 * 5 4 3 8 8 N 1.31624 * 120.00001 * 156.94101 * 7 5 4 9 9 Si 1.86794 * 120.00154 * 336.94101 * 7 5 4 10 10 H 1.48503 * 109.47480 * 94.19518 * 9 7 5 11 11 H 1.48502 * 109.47375 * 214.19809 * 9 7 5 12 12 H 1.48502 * 109.47023 * 334.19489 * 9 7 5 13 13 C 1.46505 * 119.99601 * 264.81922 * 4 3 2 14 14 C 1.52995 * 109.47063 * 89.99904 * 13 4 3 15 15 H 1.09003 * 109.50758 * 305.00614 * 14 13 4 16 16 C 1.53111 * 109.50533 * 184.92003 * 14 13 4 17 17 C 1.53129 * 109.15966 * 182.44491 * 16 14 13 18 18 C 1.53028 * 109.30713 * 57.59943 * 17 16 14 19 19 N 1.46847 * 109.52610 * 300.83446 * 18 17 16 20 20 C 1.46895 * 111.00356 * 185.84039 * 19 18 17 21 21 C 1.46851 * 111.19311 * 61.74872 * 19 18 17 22 22 H 1.08993 * 109.47224 * 304.70696 * 1 2 3 23 23 H 1.09003 * 109.47406 * 64.71219 * 1 2 3 24 24 H 1.08999 * 109.46938 * 184.70837 * 1 2 3 25 25 H 1.09005 * 109.47114 * 240.00022 * 2 1 3 26 26 H 1.09000 * 109.47472 * 119.99832 * 2 1 3 27 27 H 1.09004 * 109.46913 * 300.31156 * 3 2 1 28 28 H 1.08996 * 109.47108 * 60.31073 * 3 2 1 29 29 H 0.96992 * 119.99630 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47249 * 210.00076 * 13 4 3 31 31 H 1.09000 * 109.47059 * 330.00646 * 13 4 3 32 32 H 1.08998 * 109.52687 * 302.31478 * 16 14 13 33 33 H 1.09003 * 109.52379 * 62.50153 * 16 14 13 34 34 H 1.08999 * 109.47130 * 297.65291 * 17 16 14 35 35 H 1.08999 * 109.50200 * 177.55637 * 17 16 14 36 36 H 1.09006 * 109.45983 * 180.82438 * 18 17 16 37 37 H 1.09000 * 109.46929 * 60.85402 * 18 17 16 38 38 H 1.08997 * 109.47534 * 295.79298 * 20 19 18 39 39 H 1.09003 * 109.47164 * 55.79570 * 20 19 18 40 40 H 1.09006 * 109.47081 * 175.79046 * 20 19 18 41 41 H 1.09001 * 109.46361 * 178.25024 * 21 19 18 42 42 H 1.08997 * 109.46698 * 58.27003 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0076 5 6 4.1835 1.3377 -1.1924 6 1 3.8307 0.6637 -1.9590 7 6 5.3249 2.0978 -1.4081 8 7 6.2186 1.7068 -2.2918 9 14 5.5924 3.6753 -0.4444 10 1 6.4192 3.3884 0.7554 11 1 6.2911 4.6666 -1.3014 12 1 4.2797 4.2253 -0.0208 13 6 4.2440 1.5548 1.2524 14 6 4.5019 0.1571 1.8186 15 1 3.5564 -0.3765 1.9156 16 6 5.1649 0.2768 3.1935 17 6 5.4749 -1.1252 3.7258 18 6 6.3734 -1.8582 2.7272 19 7 5.6935 -1.9475 1.4287 20 6 6.4668 -2.7651 0.4846 21 6 5.4287 -0.6133 0.8752 22 1 -0.3633 0.5851 0.8448 23 1 -0.3634 0.4390 -0.9292 24 1 -0.3633 -1.0242 0.0844 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6721 1.9579 -0.8872 28 1 1.6812 1.9547 0.8927 29 1 7.0159 2.2381 -2.4428 30 1 5.1955 2.0551 1.0722 31 1 3.6585 2.1337 1.9666 32 1 6.0909 0.8446 3.1033 33 1 4.4894 0.7867 3.8805 34 1 4.5449 -1.6792 3.8535 35 1 5.9863 -1.0453 4.6850 36 1 6.5837 -2.8619 3.0968 37 1 7.3088 -1.3109 2.6105 38 1 7.4193 -2.2774 0.2771 39 1 6.6489 -3.7479 0.9195 40 1 5.9059 -2.8767 -0.4434 41 1 4.9527 -0.7127 -0.1003 42 1 6.3685 -0.0718 0.7672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686006904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:41 Heat of formation + Delta-G solvation = -10.619269 kcal Electronic energy + Delta-G solvation = -18951.787789 eV Core-core repulsion = 16351.939139 eV Total energy + Delta-G solvation = -2599.848650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19453 -37.95147 -34.83686 -34.47323 -33.13037 -31.62984 -27.84242 -27.47065 -27.15943 -23.95512 -23.59050 -22.29881 -21.76428 -20.52288 -18.67303 -17.34980 -16.50613 -16.20723 -16.00485 -15.54156 -15.39439 -15.22697 -14.83655 -14.50792 -14.10872 -13.93123 -13.64944 -13.43170 -13.38597 -13.05562 -12.74626 -12.58891 -12.46243 -12.32762 -12.17754 -11.93978 -11.81639 -11.71479 -11.54108 -11.26271 -11.04804 -10.95881 -10.53552 -9.27146 -8.60025 -8.16894 -5.53247 1.28530 1.38960 1.49722 2.43982 3.03530 3.09577 3.46407 3.97324 3.99967 4.09324 4.20456 4.30003 4.42340 4.45996 4.53388 4.56579 4.64378 4.69146 4.72865 4.82689 4.82832 4.87973 4.94402 4.95809 5.00905 5.04612 5.11868 5.17413 5.22692 5.27499 5.33344 5.45898 5.52976 5.62508 5.70821 6.00583 6.16526 6.24521 6.27841 7.07548 7.70706 8.14820 9.02717 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.011245 C = 0.008678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.247655 B = 2489.318861 C = 3225.960834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.145 3.855 4 N -0.616 5.616 5 C -0.236 4.236 6 H 0.035 0.965 7 C -0.010 4.010 8 N -0.944 5.944 9 Si 0.928 3.072 10 H -0.280 1.280 11 H -0.312 1.312 12 H -0.259 1.259 13 C 0.137 3.863 14 C -0.089 4.089 15 H 0.075 0.925 16 C -0.118 4.118 17 C -0.105 4.105 18 C 0.050 3.950 19 N -0.551 5.551 20 C 0.031 3.969 21 C 0.092 3.908 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.259 0.741 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.059 0.941 42 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 -5.135 12.850 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.020 3.980 4 N -0.338 5.338 5 C -0.366 4.366 6 H 0.052 0.948 7 C -0.207 4.207 8 N -0.588 5.588 9 Si 0.758 3.242 10 H -0.207 1.207 11 H -0.241 1.241 12 H -0.183 1.183 13 C 0.011 3.989 14 C -0.110 4.110 15 H 0.093 0.907 16 C -0.156 4.156 17 C -0.143 4.143 18 C -0.078 4.078 19 N -0.275 5.275 20 C -0.118 4.118 21 C -0.036 4.036 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -4.951 -5.308 12.835 14.745 hybrid contribution 1.586 1.232 -0.689 2.123 sum -3.365 -4.076 12.145 13.246 Atomic orbital electron populations 1.21656 0.94358 1.01798 1.01874 1.21944 0.96181 0.98581 1.00348 1.21089 0.82236 0.95028 0.99633 1.44238 1.01778 1.86198 1.01622 1.18369 1.07054 1.17031 0.94117 0.94756 1.25970 0.97046 1.00056 0.97598 1.70011 1.10021 1.39233 1.39564 0.86072 0.78208 0.82290 0.77652 1.20734 1.24068 1.18261 1.21336 0.95168 0.95128 0.87255 1.21670 0.98494 0.96744 0.94048 0.90713 1.21666 1.00070 0.97897 0.95996 1.21533 1.00323 0.94761 0.97684 1.22222 0.94836 1.01040 0.89662 1.62060 1.46930 1.14323 1.04173 1.22297 0.95141 0.97929 0.96398 1.21741 0.96122 0.87366 0.98329 0.91650 0.93109 0.92361 0.95240 0.92712 0.94406 0.92008 0.93249 0.95509 0.91667 0.93917 0.89940 0.90771 0.89330 0.89057 0.96628 0.97228 0.89053 0.92800 0.92265 0.99372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.13 -4.50 6.23 30.59 0.19 -4.31 16 3 C 0.14 5.54 5.72 86.38 0.49 6.04 16 4 N -0.62 -28.30 1.91 -702.00 -1.34 -29.64 16 5 C -0.24 -13.09 7.84 84.03 0.66 -12.43 16 6 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 7 C -0.01 -0.58 5.27 84.86 0.45 -0.14 16 8 N -0.94 -58.80 13.97 21.65 0.30 -58.50 16 9 Si 0.93 46.46 25.28 68.60 1.73 48.19 16 10 H -0.28 -13.55 6.63 99.48 0.66 -12.89 16 11 H -0.31 -15.94 7.11 99.48 0.71 -15.24 16 12 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.14 5.67 4.07 86.38 0.35 6.02 16 14 C -0.09 -3.28 2.56 -10.74 -0.03 -3.31 16 15 H 0.07 2.74 6.48 -2.39 -0.02 2.72 16 16 C -0.12 -3.49 5.29 30.67 0.16 -3.33 16 17 C -0.11 -2.62 6.09 30.65 0.19 -2.43 16 18 C 0.05 1.43 5.46 86.32 0.47 1.90 16 19 N -0.55 -19.46 4.91 -922.58 -4.53 -23.99 16 20 C 0.03 1.01 9.59 127.69 1.22 2.24 16 21 C 0.09 3.95 4.28 86.33 0.37 4.32 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.05 1.88 6.48 -2.39 -0.02 1.86 16 27 H 0.04 1.51 8.08 -2.38 -0.02 1.49 16 28 H 0.06 2.04 7.83 -2.39 -0.02 2.02 16 29 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.03 1.26 3.65 -2.39 -0.01 1.25 16 31 H 0.07 2.35 7.86 -2.39 -0.02 2.33 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 2.13 8.09 -2.38 -0.02 2.11 16 37 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.09 2.36 8.09 -2.39 -0.02 2.34 16 40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.06 3.03 6.39 -2.39 -0.02 3.02 16 42 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: -1.00 -64.25 316.24 2.30 -61.95 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.90 Total: 10.33 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.24 Total: -8.34 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -5.57 Total: -112.13 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.73 Total: 48.19 kcal Total: -64.25 2.30 -61.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686006904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.328 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds