Wall clock time and date at job start Mon Mar 30 2020 04:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47470 * 2 1 4 4 N 1.46491 * 109.47388 * 180.02562 * 3 2 1 5 5 C 1.36943 * 120.00126 * 275.24610 * 4 3 2 6 6 H 1.07998 * 120.00034 * 37.69051 * 5 4 3 7 7 C 1.38813 * 119.99693 * 217.69358 * 5 4 3 8 8 N 1.31617 * 120.00461 * 21.67745 * 7 5 4 9 9 Si 1.86804 * 119.99775 * 201.67521 * 7 5 4 10 10 H 1.48503 * 109.46827 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47372 * 119.99858 * 9 7 5 12 12 H 1.48496 * 109.47038 * 240.00084 * 9 7 5 13 13 C 1.46501 * 120.00132 * 95.24232 * 4 3 2 14 14 C 1.53004 * 109.46967 * 270.00269 * 13 4 3 15 15 H 1.08994 * 109.50577 * 54.99548 * 14 13 4 16 16 C 1.53122 * 109.50137 * 175.07843 * 14 13 4 17 17 C 1.53195 * 109.11520 * 177.59514 * 16 14 13 18 18 C 1.53035 * 109.30302 * 302.36628 * 17 16 14 19 19 N 1.46848 * 109.51839 * 59.18066 * 18 17 16 20 20 C 1.46902 * 110.99792 * 174.16182 * 19 18 17 21 21 C 1.46844 * 111.19760 * 298.25755 * 19 18 17 22 22 H 1.08993 * 109.47230 * 59.99011 * 1 2 3 23 23 H 1.08993 * 109.47063 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46701 * 299.99885 * 1 2 3 25 25 H 1.08998 * 109.46724 * 240.00383 * 2 1 3 26 26 H 1.09003 * 109.47541 * 120.00285 * 2 1 3 27 27 H 1.09000 * 109.46451 * 60.00088 * 3 2 1 28 28 H 1.08993 * 109.46958 * 300.00711 * 3 2 1 29 29 H 0.96996 * 120.00155 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47395 * 150.00129 * 13 4 3 31 31 H 1.08999 * 109.46570 * 30.00089 * 13 4 3 32 32 H 1.09002 * 109.52206 * 297.54114 * 16 14 13 33 33 H 1.09007 * 109.52335 * 57.72415 * 16 14 13 34 34 H 1.09001 * 109.49203 * 182.41789 * 17 16 14 35 35 H 1.09004 * 109.52643 * 62.33832 * 17 16 14 36 36 H 1.08997 * 109.46558 * 299.16841 * 18 17 16 37 37 H 1.08998 * 109.46380 * 179.19436 * 18 17 16 38 38 H 1.09002 * 109.47240 * 184.20571 * 20 19 18 39 39 H 1.08998 * 109.47246 * 304.20937 * 20 19 18 40 40 H 1.08999 * 109.47444 * 64.21191 * 20 19 18 41 41 H 1.08997 * 109.46518 * 301.72478 * 21 19 18 42 42 H 1.09009 * 109.45249 * 181.75504 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.3338 1.1801 6 1 3.8197 0.6877 1.9620 7 6 5.3612 2.0543 1.3717 8 7 5.5973 3.1303 0.6514 9 14 6.6019 1.4968 2.6521 10 1 6.1034 0.2691 3.3227 11 1 7.8999 1.2081 1.9910 12 1 6.7882 2.5703 3.6611 13 6 4.2370 1.5586 -1.2643 14 6 4.4917 0.1625 -1.8363 15 1 3.5457 -0.3707 -1.9297 16 6 5.1470 0.2865 -3.2146 17 6 5.4528 -1.1149 -3.7526 18 6 6.3569 -1.8512 -2.7615 19 7 5.6846 -1.9435 -1.4592 20 6 6.4631 -2.7641 -0.5219 21 6 5.4237 -0.6108 -0.9006 22 1 -0.3633 0.5139 -0.8898 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 6.4157 3.6335 0.7851 30 1 5.1895 2.0583 -1.0879 31 1 3.6476 2.1398 -1.9734 32 1 4.4681 0.7993 -3.8959 33 1 6.0740 0.8534 -3.1276 34 1 5.9584 -1.0328 -4.7148 35 1 4.5221 -1.6685 -3.8769 36 1 7.2932 -1.3047 -2.6488 37 1 6.5645 -2.8539 -3.1349 38 1 5.9078 -2.8779 0.4092 39 1 6.6421 -3.7457 -0.9605 40 1 7.4170 -2.2775 -0.3187 41 1 6.3644 -0.0701 -0.7967 42 1 4.9535 -0.7128 0.0775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686006905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:44 Heat of formation + Delta-G solvation = -13.474792 kcal Electronic energy + Delta-G solvation = -18929.038931 eV Core-core repulsion = 16329.066456 eV Total energy + Delta-G solvation = -2599.972474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09703 -37.78508 -34.79604 -34.43536 -32.77434 -31.42653 -27.83835 -27.28061 -27.06491 -24.07061 -23.57667 -22.06512 -21.69470 -20.43150 -18.56653 -17.00705 -16.45794 -16.19197 -15.91458 -15.54659 -15.33096 -15.13013 -14.92139 -14.32610 -14.04656 -13.63463 -13.38856 -13.27184 -13.04579 -13.01895 -12.84513 -12.58610 -12.45021 -12.36353 -12.14972 -11.92401 -11.85645 -11.70407 -11.48252 -11.23547 -11.05139 -10.90915 -10.42902 -9.24828 -8.48744 -7.78090 -5.39771 1.36797 1.42016 1.49886 2.48423 3.08576 3.26052 3.70818 4.03216 4.05179 4.17707 4.26459 4.32925 4.46102 4.49370 4.55117 4.65154 4.69448 4.73353 4.80464 4.86036 4.93829 4.94930 5.01407 5.05506 5.12000 5.14922 5.18367 5.22013 5.29777 5.31956 5.47891 5.52348 5.59127 5.69066 5.73594 5.92306 6.20061 6.28229 6.50512 7.21831 7.92673 8.45688 9.15681 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.011754 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.762179 B = 2381.635881 C = 3350.411591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.146 3.854 4 N -0.599 5.599 5 C -0.244 4.244 6 H 0.049 0.951 7 C -0.027 4.027 8 N -0.916 5.916 9 Si 0.932 3.068 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.290 1.290 13 C 0.156 3.844 14 C -0.086 4.086 15 H 0.062 0.938 16 C -0.114 4.114 17 C -0.106 4.106 18 C 0.053 3.947 19 N -0.553 5.553 20 C 0.026 3.974 21 C 0.092 3.908 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.027 0.973 28 H 0.041 0.959 29 H 0.249 0.751 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.017 0.983 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.012 0.988 41 H -0.009 1.009 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -9.483 -7.291 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.020 3.980 4 N -0.320 5.320 5 C -0.374 4.374 6 H 0.066 0.934 7 C -0.225 4.225 8 N -0.561 5.561 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.217 1.217 13 C 0.029 3.971 14 C -0.107 4.107 15 H 0.080 0.920 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.075 4.075 19 N -0.277 5.277 20 C -0.122 4.122 21 C -0.036 4.036 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.030 0.970 41 H 0.009 0.991 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.346 -9.584 -7.337 12.296 hybrid contribution 1.769 0.637 1.167 2.213 sum -0.577 -8.947 -6.170 10.884 Atomic orbital electron populations 1.21659 0.94585 1.01731 1.01718 1.21948 0.95988 0.98462 1.00412 1.20992 0.83978 0.94703 0.98301 1.43973 1.00531 1.85157 1.02315 1.19006 1.05463 1.18478 0.94478 0.93363 1.25605 1.02333 0.94917 0.99600 1.70123 1.25785 1.15913 1.44232 0.85745 0.79999 0.78322 0.79813 1.19127 1.22024 1.21745 1.20850 0.97592 0.93303 0.85355 1.21655 0.97726 0.97418 0.93922 0.91989 1.21614 0.99854 0.97609 0.96202 1.21547 1.00240 0.94744 0.97800 1.22185 0.94777 1.00902 0.89643 1.62059 1.47121 1.14425 1.04122 1.22361 0.95171 0.97951 0.96701 1.21779 0.96164 0.87139 0.98530 0.92267 0.92102 0.93010 0.93055 0.94465 0.95408 0.94029 0.94211 0.92452 0.95701 0.91147 0.94010 0.89587 0.91040 0.96503 0.88993 0.92146 0.89161 0.96980 0.99071 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.13 -4.62 6.23 30.60 0.19 -4.42 16 3 C 0.15 6.16 5.72 86.38 0.49 6.66 16 4 N -0.60 -29.53 2.31 -702.02 -1.62 -31.15 16 5 C -0.24 -13.17 7.42 84.03 0.62 -12.55 16 6 H 0.05 2.67 7.92 -2.91 -0.02 2.64 16 7 C -0.03 -1.51 4.94 84.86 0.42 -1.09 16 8 N -0.92 -53.62 11.50 21.65 0.25 -53.37 16 9 Si 0.93 44.94 29.61 68.60 2.03 46.97 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 C 0.16 7.29 4.84 86.38 0.42 7.71 16 14 C -0.09 -3.41 2.56 -10.74 -0.03 -3.44 16 15 H 0.06 2.47 6.47 -2.39 -0.02 2.45 16 16 C -0.11 -3.75 5.29 30.70 0.16 -3.59 16 17 C -0.11 -2.81 6.09 30.67 0.19 -2.62 16 18 C 0.05 1.50 5.47 86.32 0.47 1.97 16 19 N -0.55 -18.93 4.91 -922.59 -4.53 -23.46 16 20 C 0.03 0.80 9.59 127.69 1.22 2.02 16 21 C 0.09 3.83 4.28 86.33 0.37 4.20 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.05 1.87 6.47 -2.39 -0.02 1.86 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.22 8.08 -2.39 -0.02 1.21 16 28 H 0.04 1.65 7.83 -2.39 -0.02 1.64 16 29 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.06 3.12 5.54 -2.39 -0.01 3.11 16 31 H 0.02 1.12 7.86 -2.39 -0.02 1.10 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.06 3.09 6.39 -2.38 -0.02 3.07 16 Total: -1.00 -60.21 320.75 2.31 -57.90 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.94 Total: 11.41 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.25 Total: -8.29 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -5.90 Total: -107.99 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -60.21 2.31 -57.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686006905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.425 kcal (2) G-P(sol) polarization free energy of solvation -60.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds