Wall clock time and date at job start Mon Mar 30 2020 04:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 N 1.46496 * 109.47044 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99834 * 85.87558 * 4 3 2 6 6 H 1.08003 * 119.99816 * 208.89455 * 5 4 3 7 7 C 1.38811 * 120.00211 * 28.89147 * 5 4 3 8 8 N 1.31616 * 120.00307 * 42.02714 * 7 5 4 9 9 Si 1.86798 * 120.00081 * 222.02832 * 7 5 4 10 10 H 1.48502 * 109.47608 * 265.00693 * 9 7 5 11 11 H 1.48503 * 109.47372 * 25.00348 * 9 7 5 12 12 H 1.48502 * 109.47119 * 145.00306 * 9 7 5 13 13 C 1.46494 * 120.00207 * 265.86993 * 4 3 2 14 14 C 1.53001 * 109.47226 * 270.00144 * 13 4 3 15 15 N 1.46907 * 109.47213 * 180.02562 * 14 13 4 16 16 C 1.47440 * 110.99857 * 69.87134 * 15 14 13 17 17 C 1.54315 * 107.22974 * 123.25992 * 16 15 14 18 18 C 1.55143 * 103.02445 * 22.28566 * 17 16 15 19 19 H 1.08995 * 110.99061 * 82.43329 * 18 17 16 20 20 C 1.52991 * 110.99542 * 206.22079 * 18 17 16 21 21 C 1.47835 * 110.99945 * 190.71943 * 15 14 13 22 22 H 1.09001 * 109.47674 * 59.99747 * 1 2 3 23 23 H 1.09004 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47113 * 299.99597 * 1 2 3 25 25 H 1.09001 * 109.46486 * 239.99981 * 2 1 3 26 26 H 1.09002 * 109.47023 * 120.00631 * 2 1 3 27 27 H 1.09005 * 109.47184 * 60.00042 * 3 2 1 28 28 H 1.08997 * 109.47133 * 300.00217 * 3 2 1 29 29 H 0.97000 * 119.99369 * 0.02562 * 8 7 5 30 30 H 1.09003 * 109.47238 * 30.00453 * 13 4 3 31 31 H 1.09004 * 109.47325 * 150.00560 * 13 4 3 32 32 H 1.09000 * 109.47476 * 299.99547 * 14 13 4 33 33 H 1.08999 * 109.47426 * 60.00362 * 14 13 4 34 34 H 1.09003 * 109.88964 * 242.66182 * 16 15 14 35 35 H 1.08995 * 109.89208 * 3.85423 * 16 15 14 36 36 H 1.09004 * 110.70901 * 140.66277 * 17 16 15 37 37 H 1.08997 * 110.70880 * 263.90228 * 17 16 15 38 38 H 1.09004 * 109.47157 * 58.54034 * 20 18 17 39 39 H 1.08999 * 109.47499 * 178.54196 * 20 18 17 40 40 H 1.09004 * 109.46888 * 298.54449 * 20 18 17 41 41 H 1.08995 * 110.37909 * 332.46193 * 21 15 14 42 42 H 1.09007 * 110.37966 * 94.80629 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1891 1.3572 -1.1838 6 1 5.1683 0.9022 -1.2098 7 6 3.6242 1.8556 -2.3497 8 7 2.9883 3.0079 -2.3325 9 14 3.7664 0.8910 -3.9430 10 1 4.9332 1.3842 -4.7179 11 1 3.9505 -0.5499 -3.6346 12 1 2.5285 1.0717 -4.7432 13 6 4.2380 1.5335 1.2644 14 6 4.4932 3.0040 1.6012 15 7 5.2289 3.0954 2.8695 16 6 6.6122 2.6095 2.7141 17 6 7.5505 3.7540 3.1513 18 6 6.6438 4.6196 4.0654 19 1 6.6027 4.2104 5.0748 20 6 7.1157 6.0748 4.0858 21 6 5.2718 4.4901 3.3578 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 2.9148 3.5089 -1.5052 30 1 3.6493 1.0756 2.0593 31 1 5.1905 1.0117 1.1709 32 1 5.0820 3.4620 0.8064 33 1 3.5409 3.5259 1.6948 34 1 6.7720 1.7367 3.3473 35 1 6.8004 2.3534 1.6716 36 1 8.4006 3.3631 3.7106 37 1 7.8870 4.3277 2.2877 38 1 7.1078 6.4736 3.0714 39 1 6.4477 6.6647 4.7133 40 1 8.1280 6.1228 4.4871 41 1 5.2087 5.1869 2.5221 42 1 4.4618 4.6699 4.0648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686006906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:08 Heat of formation + Delta-G solvation = 5.134594 kcal Electronic energy + Delta-G solvation = -18045.224133 eV Core-core repulsion = 15446.058622 eV Total energy + Delta-G solvation = -2599.165511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.92143 -36.36529 -33.53243 -32.39363 -31.03053 -29.46472 -27.68339 -25.48238 -25.04131 -22.99863 -21.57499 -20.36736 -20.17515 -19.38939 -17.13915 -16.13171 -15.34273 -14.48866 -14.44121 -13.69137 -13.64662 -13.50399 -13.22030 -13.11030 -12.92314 -12.52436 -12.33466 -12.01193 -11.94942 -11.17580 -10.99880 -10.93292 -10.86924 -10.71315 -10.65191 -10.48991 -10.33492 -10.31153 -10.07320 -9.99401 -9.75972 -9.44599 -8.13369 -7.91280 -6.79393 -6.20837 -3.13597 3.50093 3.56429 3.71948 4.29300 4.61280 4.66541 4.81732 5.01115 5.20530 5.37956 5.48013 5.52896 5.56905 5.69004 5.78844 5.82092 5.86813 5.88042 5.91259 5.99001 6.05415 6.11454 6.18181 6.20629 6.32135 6.39447 6.41053 6.50825 6.57740 6.73719 6.78492 6.81339 6.96471 7.18433 7.39392 7.39892 7.54324 8.17446 8.58610 9.16038 9.90109 10.37998 11.08879 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.006053 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.872414 B = 4624.743174 C = 5235.359496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.143 3.857 4 N -0.592 5.592 5 C -0.371 4.371 6 H 0.051 0.949 7 C -0.010 4.010 8 N -0.883 5.883 9 Si 1.048 2.952 10 H -0.295 1.295 11 H -0.291 1.291 12 H -0.287 1.287 13 C 0.157 3.843 14 C 0.034 3.966 15 N -0.531 5.531 16 C 0.042 3.958 17 C -0.138 4.138 18 C -0.102 4.102 19 H 0.080 0.920 20 C -0.141 4.141 21 C 0.046 3.954 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.269 0.731 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 1.575 10.741 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.016 3.984 4 N -0.313 5.313 5 C -0.499 4.499 6 H 0.069 0.931 7 C -0.216 4.216 8 N -0.520 5.520 9 Si 0.878 3.122 10 H -0.223 1.223 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.030 3.970 14 C -0.097 4.097 15 N -0.256 5.256 16 C -0.086 4.086 17 C -0.176 4.176 18 C -0.122 4.122 19 H 0.098 0.902 20 C -0.199 4.199 21 C -0.082 4.082 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.243 1.256 9.450 10.070 hybrid contribution 0.869 0.555 0.965 1.412 sum 4.112 1.811 10.415 11.343 Atomic orbital electron populations 1.21724 0.97470 1.00212 1.01041 1.21979 0.93548 1.00905 1.01161 1.20892 0.83918 0.93696 0.99850 1.44022 1.00529 1.85000 1.01789 1.19648 1.04793 1.39397 0.86101 0.93119 1.25647 0.99804 0.95060 1.01044 1.70812 1.44809 1.07545 1.28864 0.83819 0.76321 0.76204 0.75891 1.22286 1.21717 1.21257 1.20816 0.95891 0.92029 0.88226 1.23096 0.97054 1.01783 0.87722 1.63627 1.13461 1.18725 1.29804 1.22807 0.87544 0.97360 1.00902 1.22860 0.98226 0.97284 0.99233 1.22288 0.95019 0.95434 0.99411 0.90161 1.21715 1.00805 0.95484 1.01870 1.23077 0.96801 0.90050 0.98255 0.93030 0.93891 0.93682 0.92080 0.93716 0.95476 0.91419 0.92061 0.94119 0.94026 0.94622 0.92278 0.91093 0.92230 0.91246 0.91654 0.92667 0.92609 0.92667 0.93837 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 37.16 0.37 -2.14 16 2 C -0.14 -2.80 6.24 -26.73 -0.17 -2.97 16 3 C 0.14 3.33 5.13 -4.05 -0.02 3.31 16 4 N -0.59 -14.77 2.35 -173.24 -0.41 -15.18 16 5 C -0.37 -10.31 9.27 -15.06 -0.14 -10.45 16 6 H 0.05 1.46 8.06 -52.48 -0.42 1.04 16 7 C -0.01 -0.28 4.47 -17.43 -0.08 -0.36 16 8 N -0.88 -26.03 12.38 55.49 0.69 -25.34 16 9 Si 1.05 25.28 30.06 -169.99 -5.11 20.17 16 10 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.16 3.43 5.68 -4.04 -0.02 3.41 16 14 C 0.03 0.68 4.86 -3.82 -0.02 0.66 16 15 N -0.53 -9.04 5.16 -231.25 -1.19 -10.24 16 16 C 0.04 0.65 6.20 -2.84 -0.02 0.63 16 17 C -0.14 -1.75 6.41 -24.91 -0.16 -1.91 16 18 C -0.10 -1.24 3.63 -88.48 -0.32 -1.56 16 19 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 20 C -0.14 -1.44 9.30 37.15 0.35 -1.10 16 21 C 0.05 0.68 6.15 -2.30 -0.01 0.66 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 28 H 0.07 1.77 5.64 -51.93 -0.29 1.48 16 29 H 0.27 8.03 7.88 -40.82 -0.32 7.71 16 30 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 0.92 7.04 -51.93 -0.37 0.56 16 32 H 0.04 0.82 7.96 -51.93 -0.41 0.40 16 33 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.03 6.91 -51.93 -0.36 0.67 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -28.73 329.60 -9.42 -38.14 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.11 Total: -0.71 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.25 Total: -11.82 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.91 Total: -50.75 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.11 Total: 20.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.73 -9.42 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686006906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.278 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds