Wall clock time and date at job start Mon Mar 30 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 H 1.09003 * 109.47241 * 300.84395 * 3 2 1 5 5 C 1.50699 * 109.47315 * 180.84206 * 3 2 1 6 6 H 1.07996 * 119.99964 * 239.99878 * 5 3 2 7 7 C 1.37878 * 119.99894 * 59.99867 * 5 3 2 8 8 N 1.31512 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46972 * 60.00255 * 9 7 5 11 11 H 1.48498 * 109.47492 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47089 * 300.00566 * 9 7 5 13 13 N 1.46900 * 109.46954 * 60.84152 * 3 2 1 14 14 C 1.46900 * 110.99747 * 196.07726 * 13 3 2 15 15 C 1.46901 * 110.99896 * 72.12368 * 13 3 2 16 16 H 1.08997 * 110.63011 * 47.93866 * 15 13 3 17 17 C 1.55141 * 110.70264 * 171.04056 * 15 13 3 18 18 C 1.55121 * 101.55638 * 153.90904 * 17 15 13 19 19 N 1.47853 * 104.90449 * 323.15713 * 18 17 15 20 20 C 1.46898 * 111.00049 * 146.23977 * 19 18 17 21 21 C 1.53001 * 109.46875 * 69.15872 * 20 19 18 22 22 C 1.47448 * 108.56321 * 23.97226 * 19 18 17 23 23 H 1.08994 * 109.47336 * 305.28567 * 1 2 3 24 24 H 1.09001 * 109.46747 * 65.28236 * 1 2 3 25 25 H 1.08992 * 109.46839 * 185.27860 * 1 2 3 26 26 H 1.08999 * 109.47069 * 120.00187 * 2 1 3 27 27 H 1.09002 * 109.46971 * 240.00539 * 2 1 3 28 28 H 0.96999 * 120.00690 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47760 * 54.74394 * 14 13 3 30 30 H 1.09010 * 109.47039 * 174.73789 * 14 13 3 31 31 H 1.09001 * 109.47159 * 294.73703 * 14 13 3 32 32 H 1.09002 * 110.99342 * 272.12406 * 17 15 13 33 33 H 1.08998 * 110.99149 * 35.94670 * 17 15 13 34 34 H 1.08996 * 110.42580 * 204.24199 * 18 17 15 35 35 H 1.08999 * 110.31134 * 82.01777 * 18 17 15 36 36 H 1.09001 * 109.47061 * 189.16092 * 20 19 18 37 37 H 1.08998 * 109.47059 * 309.16101 * 20 19 18 38 38 H 1.09001 * 109.47455 * 299.99979 * 21 20 19 39 39 H 1.08998 * 109.47090 * 60.00248 * 21 20 19 40 40 H 1.09002 * 109.47172 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.88803 * 239.60260 * 22 19 18 42 42 H 1.09005 * 109.88467 * 118.41801 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6644 1.9607 -0.8823 5 6 3.5469 1.4426 -0.0209 6 1 4.0980 1.9063 0.7838 7 6 4.2218 0.8507 -1.0673 8 7 3.5507 0.2864 -2.0475 9 14 6.0897 0.8514 -1.0936 10 1 6.6019 0.1458 0.1085 11 1 6.5678 0.1578 -2.3165 12 1 6.5842 2.2517 -1.0939 13 7 1.5670 2.1291 1.2095 14 6 1.7007 3.5857 1.0743 15 6 2.2754 1.6437 2.4014 16 1 3.3510 1.6221 2.2266 17 6 1.9378 2.5213 3.6354 18 6 2.1703 1.5230 4.7997 19 7 1.6974 0.2205 4.2840 20 6 2.5015 -0.8833 4.8253 21 6 2.2170 -1.0357 6.3209 22 6 1.7610 0.2478 2.8111 23 1 -0.3634 0.5936 0.8388 24 1 -0.3633 0.4297 -0.9335 25 1 -0.3633 -1.0232 0.0945 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 4.0255 -0.1297 -2.7839 29 1 1.1867 3.9156 0.1715 30 1 1.2583 4.0734 1.9430 31 1 2.7564 3.8491 1.0081 32 1 2.6149 3.3726 3.7062 33 1 0.8994 2.8516 3.6073 34 1 1.5910 1.8176 5.6747 35 1 3.2305 1.4709 5.0473 36 1 2.2424 -1.8082 4.3100 37 1 3.5598 -0.6687 4.6768 38 1 2.4760 -0.1108 6.8362 39 1 1.1587 -1.2502 6.4694 40 1 2.8132 -1.8550 6.7225 41 1 0.7678 0.0814 2.3940 42 1 2.4483 -0.5198 2.4554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688491657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:52 Heat of formation + Delta-G solvation = 13.442813 kcal Electronic energy + Delta-G solvation = -18978.181334 eV Core-core repulsion = 16379.376095 eV Total energy + Delta-G solvation = -2598.805240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.14181 -36.44238 -33.22474 -31.81486 -31.26115 -28.67410 -27.48573 -26.84774 -24.14859 -22.71850 -22.38362 -20.24721 -19.91116 -18.96256 -16.55526 -15.55074 -15.32077 -14.86054 -14.51774 -13.80127 -13.61330 -13.30123 -12.89385 -12.70197 -12.42766 -12.14217 -11.98868 -11.81077 -11.50748 -11.28943 -11.13132 -11.02985 -10.91405 -10.71333 -10.55745 -10.48749 -10.25590 -10.06599 -9.80120 -9.54028 -9.44027 -8.99964 -8.36422 -7.89744 -7.08478 -6.00597 -4.13689 3.24367 3.30249 3.32264 4.34875 4.36683 4.99888 5.13425 5.23650 5.28604 5.37374 5.46294 5.61495 5.70337 5.89115 5.98053 6.03378 6.10704 6.16137 6.19450 6.27003 6.32134 6.40019 6.42389 6.54261 6.57293 6.65753 6.69919 6.77771 6.91170 7.15047 7.22936 7.37272 7.44287 7.49486 7.63632 7.79168 7.99831 8.16347 8.32061 8.49988 8.96643 9.53382 10.98850 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.008411 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.213621 B = 3328.100052 C = 3619.945490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.212 3.788 4 H 0.036 0.964 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.529 5.529 14 C 0.036 3.964 15 C 0.070 3.930 16 H 0.065 0.935 17 C -0.128 4.128 18 C 0.045 3.955 19 N -0.532 5.532 20 C 0.044 3.956 21 C -0.144 4.144 22 C 0.054 3.946 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.262 0.738 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.641 0.522 10.842 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.106 3.894 4 H 0.054 0.946 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.253 5.253 14 C -0.113 4.113 15 C -0.040 4.040 16 H 0.083 0.917 17 C -0.167 4.167 18 C -0.083 4.083 19 N -0.257 5.257 20 C -0.084 4.084 21 C -0.202 4.202 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.632 0.213 10.861 11.454 hybrid contribution 2.930 0.269 -0.540 2.992 sum -0.701 0.482 10.321 10.356 Atomic orbital electron populations 1.21769 0.98947 0.98546 1.00600 1.21824 0.92205 0.99259 1.02544 1.19278 0.92295 0.91211 0.86628 0.94592 1.21675 0.92716 1.37120 1.06863 0.92593 1.24890 0.97853 0.95082 0.95439 1.69868 1.35098 1.37048 1.10132 0.86786 0.86401 0.78162 0.77418 1.20409 1.21156 1.20415 1.62519 1.55177 1.03605 1.03978 1.22144 0.99183 0.89906 1.00047 1.22758 0.97906 0.93476 0.89834 0.91710 1.22903 1.01974 0.97248 0.94545 1.22991 0.97764 0.89736 0.97847 1.63739 1.51754 1.02366 1.07845 1.22258 0.95173 0.95253 0.95753 1.21743 1.01978 1.00963 0.95482 1.23157 1.02295 0.96918 0.84922 0.92681 0.94560 0.95657 0.93601 0.89440 0.92833 0.92717 0.93398 0.95945 0.91901 0.90420 0.91104 0.94299 0.91059 0.95070 0.93072 0.92091 0.92870 0.88992 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.16 37.16 0.34 -2.53 16 2 C -0.12 -2.80 4.67 -26.73 -0.12 -2.92 16 3 C 0.21 5.15 1.73 -68.86 -0.12 5.03 16 4 H 0.04 0.98 7.88 -51.93 -0.41 0.57 16 5 C -0.54 -14.34 7.21 -34.44 -0.25 -14.59 16 6 H 0.06 1.49 5.83 -52.49 -0.31 1.18 16 7 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 8 N -0.88 -24.64 11.31 55.43 0.63 -24.02 16 9 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.53 -11.01 3.75 -226.11 -0.85 -11.86 16 14 C 0.04 0.69 8.89 60.06 0.53 1.22 16 15 C 0.07 1.36 2.37 -65.89 -0.16 1.21 16 16 H 0.07 1.45 5.49 -51.93 -0.28 1.16 16 17 C -0.13 -2.06 5.05 -24.48 -0.12 -2.18 16 18 C 0.04 0.66 5.79 -2.18 -0.01 0.65 16 19 N -0.53 -8.60 5.16 -231.10 -1.19 -9.79 16 20 C 0.04 0.63 5.28 -3.82 -0.02 0.61 16 21 C -0.14 -1.67 9.96 37.16 0.37 -1.30 16 22 C 0.05 1.01 4.54 -2.84 -0.01 0.99 16 23 H 0.05 1.09 6.43 -51.93 -0.33 0.76 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.05 4.30 -51.93 -0.22 0.83 16 27 H 0.09 2.30 6.05 -51.93 -0.31 1.99 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 30 H 0.05 0.79 6.61 -51.92 -0.34 0.44 16 31 H 0.02 0.45 7.73 -51.93 -0.40 0.05 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.25 7.67 -51.93 -0.40 0.85 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.57 7.62 -51.93 -0.40 0.17 16 36 H 0.07 1.01 8.03 -51.93 -0.42 0.60 16 37 H 0.03 0.46 7.85 -51.93 -0.41 0.05 16 38 H 0.05 0.57 7.49 -51.93 -0.39 0.19 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.81 5.51 -51.93 -0.29 1.53 16 42 H 0.06 1.12 6.19 -51.93 -0.32 0.80 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -26.79 306.85 -8.80 -35.59 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.32 Total: 1.50 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 0.33 Total: -12.02 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -1.41 Total: -45.67 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.79 -8.80 -35.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688491657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.028 kcal (2) G-P(sol) polarization free energy of solvation -26.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds