Wall clock time and date at job start Mon Mar 30 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 H 1.09003 * 109.47241 * 300.84395 * 3 2 1 5 5 C 1.50699 * 109.47315 * 180.84206 * 3 2 1 6 6 H 1.07996 * 119.99964 * 239.99878 * 5 3 2 7 7 C 1.37878 * 119.99894 * 59.99867 * 5 3 2 8 8 N 1.31512 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46972 * 60.00255 * 9 7 5 11 11 H 1.48498 * 109.47492 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47089 * 300.00566 * 9 7 5 13 13 N 1.46900 * 109.46954 * 60.84152 * 3 2 1 14 14 C 1.46900 * 110.99747 * 196.07726 * 13 3 2 15 15 C 1.46901 * 110.99896 * 72.12368 * 13 3 2 16 16 H 1.08997 * 110.63011 * 47.93866 * 15 13 3 17 17 C 1.55141 * 110.70264 * 171.04056 * 15 13 3 18 18 C 1.55121 * 101.55638 * 153.90904 * 17 15 13 19 19 N 1.47853 * 104.90449 * 323.15713 * 18 17 15 20 20 C 1.46898 * 111.00049 * 146.23977 * 19 18 17 21 21 C 1.53001 * 109.46875 * 69.15872 * 20 19 18 22 22 C 1.47448 * 108.56321 * 23.97226 * 19 18 17 23 23 H 1.08994 * 109.47336 * 305.28567 * 1 2 3 24 24 H 1.09001 * 109.46747 * 65.28236 * 1 2 3 25 25 H 1.08992 * 109.46839 * 185.27860 * 1 2 3 26 26 H 1.08999 * 109.47069 * 120.00187 * 2 1 3 27 27 H 1.09002 * 109.46971 * 240.00539 * 2 1 3 28 28 H 0.96999 * 120.00690 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47760 * 54.74394 * 14 13 3 30 30 H 1.09010 * 109.47039 * 174.73789 * 14 13 3 31 31 H 1.09001 * 109.47159 * 294.73703 * 14 13 3 32 32 H 1.09002 * 110.99342 * 272.12406 * 17 15 13 33 33 H 1.08998 * 110.99149 * 35.94670 * 17 15 13 34 34 H 1.08996 * 110.42580 * 204.24199 * 18 17 15 35 35 H 1.08999 * 110.31134 * 82.01777 * 18 17 15 36 36 H 1.09001 * 109.47061 * 189.16092 * 20 19 18 37 37 H 1.08998 * 109.47059 * 309.16101 * 20 19 18 38 38 H 1.09001 * 109.47455 * 299.99979 * 21 20 19 39 39 H 1.08998 * 109.47090 * 60.00248 * 21 20 19 40 40 H 1.09002 * 109.47172 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.88803 * 239.60260 * 22 19 18 42 42 H 1.09005 * 109.88467 * 118.41801 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6644 1.9607 -0.8823 5 6 3.5469 1.4426 -0.0209 6 1 4.0980 1.9063 0.7838 7 6 4.2218 0.8507 -1.0673 8 7 3.5507 0.2864 -2.0475 9 14 6.0897 0.8514 -1.0936 10 1 6.6019 0.1458 0.1085 11 1 6.5678 0.1578 -2.3165 12 1 6.5842 2.2517 -1.0939 13 7 1.5670 2.1291 1.2095 14 6 1.7007 3.5857 1.0743 15 6 2.2754 1.6437 2.4014 16 1 3.3510 1.6221 2.2266 17 6 1.9378 2.5213 3.6354 18 6 2.1703 1.5230 4.7997 19 7 1.6974 0.2205 4.2840 20 6 2.5015 -0.8833 4.8253 21 6 2.2170 -1.0357 6.3209 22 6 1.7610 0.2478 2.8111 23 1 -0.3634 0.5936 0.8388 24 1 -0.3633 0.4297 -0.9335 25 1 -0.3633 -1.0232 0.0945 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 4.0255 -0.1297 -2.7839 29 1 1.1867 3.9156 0.1715 30 1 1.2583 4.0734 1.9430 31 1 2.7564 3.8491 1.0081 32 1 2.6149 3.3726 3.7062 33 1 0.8994 2.8516 3.6073 34 1 1.5910 1.8176 5.6747 35 1 3.2305 1.4709 5.0473 36 1 2.2424 -1.8082 4.3100 37 1 3.5598 -0.6687 4.6768 38 1 2.4760 -0.1108 6.8362 39 1 1.1587 -1.2502 6.4694 40 1 2.8132 -1.8550 6.7225 41 1 0.7678 0.0814 2.3940 42 1 2.4483 -0.5198 2.4554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688491657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:52 Heat of formation + Delta-G solvation = -3.377177 kcal Electronic energy + Delta-G solvation = -18978.910704 eV Core-core repulsion = 16379.376095 eV Total energy + Delta-G solvation = -2599.534609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62117 -38.01703 -34.96372 -33.50177 -32.81548 -30.00598 -28.90709 -28.67607 -25.93912 -24.29198 -23.70955 -21.72108 -21.37977 -20.74863 -18.42694 -17.11141 -16.79912 -16.63803 -15.71121 -15.56413 -15.13896 -14.92313 -14.41460 -14.19723 -13.90140 -13.58889 -13.46051 -13.31529 -13.13471 -12.91971 -12.70609 -12.70119 -12.38882 -12.26974 -12.00205 -11.87248 -11.75851 -11.61922 -11.53554 -11.33554 -11.26717 -10.87722 -10.41783 -9.23580 -8.86724 -8.04556 -6.26562 1.33546 1.34766 1.41580 2.36725 3.07302 3.13474 3.47182 3.79883 3.95316 4.22417 4.28507 4.44295 4.48704 4.57134 4.65202 4.67477 4.71593 4.76756 4.80736 4.89506 4.96211 5.01195 5.02341 5.06923 5.11812 5.15426 5.21177 5.27392 5.36266 5.39372 5.48965 5.53160 5.67896 5.83419 6.07411 6.11230 6.20359 6.24208 6.38881 6.71092 6.95992 7.43654 8.90439 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.008411 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.213621 B = 3328.100052 C = 3619.945490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.526 5.526 14 C 0.038 3.962 15 C 0.067 3.933 16 H 0.033 0.967 17 C -0.118 4.118 18 C 0.048 3.952 19 N -0.533 5.533 20 C 0.040 3.960 21 C -0.135 4.135 22 C 0.064 3.936 23 H 0.061 0.939 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.261 0.739 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.006 0.994 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 0.874 13.018 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.152 4.152 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.249 5.249 14 C -0.111 4.111 15 C -0.043 4.043 16 H 0.051 0.949 17 C -0.157 4.157 18 C -0.080 4.080 19 N -0.258 5.258 20 C -0.088 4.088 21 C -0.193 4.193 22 C -0.064 4.064 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.025 0.975 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.820 0.573 13.057 13.616 hybrid contribution 2.981 0.174 -1.192 3.215 sum -0.840 0.747 11.864 11.918 Atomic orbital electron populations 1.21620 0.96487 0.99866 1.00560 1.21661 0.94334 0.98264 1.00947 1.19042 0.91188 0.91675 0.86915 0.98135 1.21932 0.94026 1.36554 1.06510 0.93169 1.25574 1.01739 0.95057 0.95321 1.70000 1.36429 1.37798 1.10595 0.85882 0.81809 0.78140 0.77431 1.20074 1.20781 1.20099 1.62485 1.54855 1.04421 1.03175 1.22202 0.98428 0.88973 1.01498 1.22742 0.95830 0.95119 0.90573 0.94896 1.22858 1.02557 0.97353 0.92884 1.23065 0.98489 0.88453 0.97984 1.63790 1.52447 1.03651 1.05943 1.22358 0.94418 0.94394 0.97669 1.21678 1.02418 1.02040 0.93117 1.22914 1.00859 0.95701 0.86897 0.91974 0.95078 0.93761 0.93478 0.92657 0.92958 0.93041 0.90073 0.97517 0.90686 0.89763 0.88573 0.93944 0.91529 0.95880 0.92384 0.91924 0.91159 0.89969 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.16 71.98 0.66 -4.51 16 2 C -0.11 -5.42 4.67 30.60 0.14 -5.28 16 3 C 0.22 10.91 1.73 44.17 0.08 10.98 16 4 H 0.00 0.04 7.88 -2.39 -0.02 0.02 16 5 C -0.55 -29.73 7.21 25.60 0.18 -29.55 16 6 H 0.05 2.73 5.83 -2.91 -0.02 2.71 16 7 C 0.02 1.27 5.30 84.66 0.45 1.72 16 8 N -0.91 -52.10 11.31 21.45 0.24 -51.86 16 9 Si 0.94 43.67 29.54 68.60 2.03 45.70 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.53 -21.85 3.75 -869.28 -3.26 -25.11 16 14 C 0.04 1.41 8.89 127.69 1.13 2.54 16 15 C 0.07 2.58 2.37 46.09 0.11 2.69 16 16 H 0.03 1.49 5.49 -2.39 -0.01 1.48 16 17 C -0.12 -3.51 5.05 32.05 0.16 -3.35 16 18 C 0.05 1.28 5.79 86.85 0.50 1.78 16 19 N -0.53 -16.25 5.16 -885.08 -4.57 -20.82 16 20 C 0.04 1.08 5.28 86.30 0.46 1.53 16 21 C -0.13 -2.74 9.96 71.98 0.72 -2.02 16 22 C 0.06 2.35 4.54 86.64 0.39 2.75 16 23 H 0.06 2.41 6.43 -2.39 -0.02 2.40 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 2.21 4.30 -2.39 -0.01 2.20 16 27 H 0.05 3.00 6.05 -2.39 -0.01 2.99 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.05 1.93 7.97 -2.39 -0.02 1.91 16 30 H 0.08 2.48 6.61 -2.38 -0.02 2.46 16 31 H 0.01 0.25 7.73 -2.39 -0.02 0.23 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.43 7.67 -2.39 -0.02 2.41 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.12 7.62 -2.39 -0.02 1.10 16 36 H 0.07 1.83 8.03 -2.39 -0.02 1.82 16 37 H 0.02 0.66 7.85 -2.39 -0.02 0.64 16 38 H 0.06 1.10 7.49 -2.39 -0.02 1.09 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 3.19 5.51 -2.39 -0.01 3.17 16 42 H 0.03 1.34 6.19 -2.38 -0.01 1.32 16 Total: -1.00 -58.14 306.85 0.39 -57.75 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.97 Total: 15.05 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.99 Total: -20.71 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -7.59 Total: -97.79 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -58.14 0.39 -57.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688491657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.372 kcal (2) G-P(sol) polarization free energy of solvation -58.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds