Wall clock time and date at job start Mon Mar 30 2020 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47649 * 2 1 4 4 H 1.09003 * 109.47073 * 55.32423 * 3 2 1 5 5 C 1.50694 * 109.47593 * 175.33224 * 3 2 1 6 6 H 1.08000 * 120.00073 * 119.99859 * 5 3 2 7 7 C 1.37873 * 119.99993 * 300.00145 * 5 3 2 8 8 N 1.31519 * 119.99899 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 119.99984 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46710 * 90.00452 * 9 7 5 11 11 H 1.48501 * 109.47348 * 209.99985 * 9 7 5 12 12 H 1.48494 * 109.47257 * 330.00408 * 9 7 5 13 13 N 1.46909 * 109.46728 * 295.33473 * 3 2 1 14 14 C 1.46895 * 111.00008 * 321.21374 * 13 3 2 15 15 C 1.46900 * 111.00106 * 85.17225 * 13 3 2 16 16 H 1.09007 * 110.64089 * 303.94421 * 15 13 3 17 17 C 1.54593 * 110.72246 * 180.79712 * 15 13 3 18 18 C 1.53992 * 105.13831 * 219.68082 * 17 15 13 19 19 N 1.47905 * 107.06046 * 358.77336 * 18 17 15 20 20 C 1.46895 * 110.99961 * 145.84054 * 19 18 17 21 21 C 1.53002 * 109.46797 * 69.88036 * 20 19 18 22 22 C 1.48531 * 105.81424 * 25.33031 * 19 18 17 23 23 H 1.09005 * 109.47530 * 194.35139 * 1 2 3 24 24 H 1.09008 * 109.46893 * 314.34607 * 1 2 3 25 25 H 1.09001 * 109.47737 * 74.34379 * 1 2 3 26 26 H 1.09009 * 109.47272 * 239.99866 * 2 1 3 27 27 H 1.09000 * 109.47606 * 119.99991 * 2 1 3 28 28 H 0.97001 * 119.99675 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47105 * 65.62409 * 14 13 3 30 30 H 1.08999 * 109.47419 * 185.62802 * 14 13 3 31 31 H 1.09001 * 109.47119 * 305.62529 * 14 13 3 32 32 H 1.08994 * 110.31037 * 338.59561 * 17 15 13 33 33 H 1.09000 * 110.30805 * 100.76506 * 17 15 13 34 34 H 1.09005 * 109.91866 * 118.12842 * 18 17 15 35 35 H 1.08997 * 109.91781 * 239.22481 * 18 17 15 36 36 H 1.08995 * 109.47294 * 189.87732 * 20 19 18 37 37 H 1.09004 * 109.47527 * 309.87835 * 20 19 18 38 38 H 1.08990 * 109.47700 * 59.99882 * 21 20 19 39 39 H 1.09006 * 109.46841 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.46671 * 299.99340 * 21 20 19 41 41 H 1.09001 * 110.66401 * 202.35655 * 22 19 18 42 42 H 1.09006 * 110.66957 * 79.22964 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6100 1.9799 0.8452 5 6 3.5425 1.4440 0.1156 6 1 4.1436 1.8900 -0.6630 7 6 4.1499 0.8759 1.2153 8 7 5.4612 0.8778 1.3164 9 14 3.1103 0.1050 2.5623 10 1 2.8868 -1.3304 2.2546 11 1 3.8152 0.2284 3.8635 12 1 1.8025 0.8041 2.6395 13 7 1.6445 2.1016 -1.2519 14 6 1.7550 1.1796 -2.3901 15 6 0.2865 2.6526 -1.1505 16 1 -0.4244 1.8740 -0.8735 17 6 -0.1306 3.3271 -2.4775 18 6 -0.8958 4.5966 -2.0602 19 7 -0.9323 4.6150 -0.5817 20 6 -0.8654 5.9905 -0.0705 21 6 -2.1723 6.7182 -0.3924 22 6 0.2443 3.8245 -0.1380 23 1 -0.3634 -0.9956 0.2547 24 1 -0.3633 0.7184 0.7350 25 1 -0.3634 0.2773 -0.9895 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8885 0.4778 2.0900 29 1 1.0320 0.3721 -2.2750 30 1 1.5532 1.7189 -3.3155 31 1 2.7619 0.7636 -2.4243 32 1 0.7512 3.5916 -3.0610 33 1 -0.7799 2.6652 -3.0506 34 1 -0.3772 5.4812 -2.4299 35 1 -1.9097 4.5670 -2.4592 36 1 -0.7174 5.9701 1.0091 37 1 -0.0329 6.5132 -0.5416 38 1 -3.0047 6.1956 0.0786 39 1 -2.1229 7.7387 -0.0127 40 1 -2.3203 6.7386 -1.4721 41 1 0.0972 3.4519 0.8758 42 1 1.1546 4.4207 -0.2015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688491664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:55 Heat of formation + Delta-G solvation = 23.684864 kcal Electronic energy + Delta-G solvation = -18800.855079 eV Core-core repulsion = 16202.493969 eV Total energy + Delta-G solvation = -2598.361111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38153 -37.12528 -33.34061 -32.07257 -30.95664 -29.12138 -28.09539 -27.40573 -24.30355 -22.89793 -22.51773 -20.68850 -19.80422 -18.91458 -16.76937 -16.22949 -15.69490 -15.17637 -14.38460 -14.22464 -14.04579 -13.51637 -13.29937 -12.82702 -12.73084 -12.26181 -12.09628 -12.01294 -11.81666 -11.66355 -11.40430 -11.28687 -10.94612 -10.89058 -10.77100 -10.61435 -10.54773 -10.33642 -10.03986 -9.79290 -9.37064 -9.05714 -8.54243 -8.24719 -7.20499 -6.03882 -4.00807 3.26273 3.37665 3.39110 4.09905 4.41263 4.83594 4.94096 5.00202 5.18381 5.24988 5.30455 5.39096 5.52055 5.65674 5.71538 5.79441 5.81733 5.86810 5.94815 5.97186 5.99087 6.08962 6.12456 6.16343 6.23944 6.29175 6.34977 6.40906 6.52652 6.56629 6.63604 6.81039 6.85255 7.03690 7.21234 7.24280 7.71669 7.99153 8.11514 8.71117 9.07319 9.59078 11.09480 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.007356 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.114907 B = 3805.495455 C = 4078.304287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.164 4.164 3 C 0.187 3.813 4 H 0.037 0.963 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.267 1.267 13 N -0.515 5.515 14 C 0.030 3.970 15 C 0.062 3.938 16 H 0.066 0.934 17 C -0.126 4.126 18 C 0.041 3.959 19 N -0.521 5.521 20 C 0.041 3.959 21 C -0.144 4.144 22 C 0.047 3.953 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.021 0.979 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.656 5.588 -5.002 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.203 4.203 3 C 0.079 3.921 4 H 0.055 0.945 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.192 1.192 13 N -0.238 5.238 14 C -0.119 4.119 15 C -0.047 4.047 16 H 0.083 0.917 17 C -0.164 4.164 18 C -0.087 4.087 19 N -0.246 5.246 20 C -0.087 4.087 21 C -0.202 4.202 22 C -0.081 4.081 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.661 5.733 -4.770 15.564 hybrid contribution -0.212 -0.856 0.703 1.128 sum -13.872 4.877 -4.067 15.257 Atomic orbital electron populations 1.22164 0.98120 1.00339 1.00938 1.22667 0.93394 1.02411 1.01792 1.19848 0.96888 0.87790 0.87576 0.94522 1.20966 0.88790 1.36846 1.06756 0.90112 1.24922 0.94709 0.95939 0.97716 1.69885 1.08395 1.45740 1.29978 0.86955 0.80673 0.79736 0.81436 1.20759 1.22489 1.19192 1.62247 1.20432 1.36156 1.04995 1.22338 1.01802 0.94577 0.93154 1.22863 0.91788 0.96066 0.93968 0.91664 1.22498 0.99721 0.96188 0.98024 1.22793 0.99815 0.97393 0.88717 1.64749 1.40647 1.11745 1.07450 1.22223 0.97097 0.88876 1.00532 1.21737 0.97761 0.99246 1.01458 1.23182 0.91527 0.94502 0.98856 0.94110 0.93059 0.92639 0.91464 0.93015 0.92731 0.96107 0.93297 0.90763 0.90502 0.91900 0.94033 0.91096 0.90903 0.94683 0.92076 0.92646 0.92971 0.90524 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.08 37.15 0.30 -2.52 16 2 C -0.16 -3.50 4.38 -26.74 -0.12 -3.61 16 3 C 0.19 4.30 1.37 -68.86 -0.09 4.21 16 4 H 0.04 0.89 5.55 -51.93 -0.29 0.60 16 5 C -0.50 -13.73 8.92 -34.44 -0.31 -14.04 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 7 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.90 24.41 -169.99 -4.15 17.75 16 10 H -0.28 -6.82 6.83 56.52 0.39 -6.44 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.27 -6.35 6.53 56.52 0.37 -5.99 16 13 N -0.51 -10.34 4.44 -226.07 -1.00 -11.34 16 14 C 0.03 0.54 7.77 60.06 0.47 1.00 16 15 C 0.06 1.07 2.35 -65.86 -0.15 0.91 16 16 H 0.07 1.13 4.12 -51.92 -0.21 0.92 16 17 C -0.13 -1.81 5.45 -25.38 -0.14 -1.95 16 18 C 0.04 0.54 5.79 -2.75 -0.02 0.53 16 19 N -0.52 -7.59 5.27 -230.46 -1.21 -8.80 16 20 C 0.04 0.52 5.48 -3.83 -0.02 0.50 16 21 C -0.14 -1.48 9.97 37.16 0.37 -1.11 16 22 C 0.05 0.80 5.26 -1.90 -0.01 0.79 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.92 7.63 -51.92 -0.40 0.52 16 25 H 0.05 0.91 4.90 -51.93 -0.25 0.66 16 26 H 0.07 1.41 6.14 -51.92 -0.32 1.09 16 27 H 0.05 1.19 3.22 -51.93 -0.17 1.03 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.35 5.13 -51.93 -0.27 0.09 16 30 H 0.05 0.77 6.66 -51.93 -0.35 0.43 16 31 H 0.07 1.48 7.64 -51.93 -0.40 1.09 16 32 H 0.08 1.15 7.29 -51.93 -0.38 0.77 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.53 7.57 -51.93 -0.39 0.14 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 37 H 0.03 0.45 7.82 -51.93 -0.41 0.04 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.52 7.52 -51.93 -0.39 0.13 16 41 H 0.08 1.37 7.56 -51.93 -0.39 0.97 16 42 H 0.06 1.10 8.02 -51.93 -0.42 0.69 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -29.19 300.75 -8.04 -37.24 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.17 Total: 0.78 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.18 Total: -13.43 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -1.44 Total: -46.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.19 -8.04 -37.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688491664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.922 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds