Wall clock time and date at job start Mon Mar 30 2020 03:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47649 * 2 1 4 4 H 1.09003 * 109.47073 * 55.32423 * 3 2 1 5 5 C 1.50694 * 109.47593 * 175.33224 * 3 2 1 6 6 H 1.08000 * 120.00073 * 119.99859 * 5 3 2 7 7 C 1.37873 * 119.99993 * 300.00145 * 5 3 2 8 8 N 1.31519 * 119.99899 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 119.99984 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46710 * 90.00452 * 9 7 5 11 11 H 1.48501 * 109.47348 * 209.99985 * 9 7 5 12 12 H 1.48494 * 109.47257 * 330.00408 * 9 7 5 13 13 N 1.46909 * 109.46728 * 295.33473 * 3 2 1 14 14 C 1.46895 * 111.00008 * 321.21374 * 13 3 2 15 15 C 1.46900 * 111.00106 * 85.17225 * 13 3 2 16 16 H 1.09007 * 110.64089 * 303.94421 * 15 13 3 17 17 C 1.54593 * 110.72246 * 180.79712 * 15 13 3 18 18 C 1.53992 * 105.13831 * 219.68082 * 17 15 13 19 19 N 1.47905 * 107.06046 * 358.77336 * 18 17 15 20 20 C 1.46895 * 110.99961 * 145.84054 * 19 18 17 21 21 C 1.53002 * 109.46797 * 69.88036 * 20 19 18 22 22 C 1.48531 * 105.81424 * 25.33031 * 19 18 17 23 23 H 1.09005 * 109.47530 * 194.35139 * 1 2 3 24 24 H 1.09008 * 109.46893 * 314.34607 * 1 2 3 25 25 H 1.09001 * 109.47737 * 74.34379 * 1 2 3 26 26 H 1.09009 * 109.47272 * 239.99866 * 2 1 3 27 27 H 1.09000 * 109.47606 * 119.99991 * 2 1 3 28 28 H 0.97001 * 119.99675 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47105 * 65.62409 * 14 13 3 30 30 H 1.08999 * 109.47419 * 185.62802 * 14 13 3 31 31 H 1.09001 * 109.47119 * 305.62529 * 14 13 3 32 32 H 1.08994 * 110.31037 * 338.59561 * 17 15 13 33 33 H 1.09000 * 110.30805 * 100.76506 * 17 15 13 34 34 H 1.09005 * 109.91866 * 118.12842 * 18 17 15 35 35 H 1.08997 * 109.91781 * 239.22481 * 18 17 15 36 36 H 1.08995 * 109.47294 * 189.87732 * 20 19 18 37 37 H 1.09004 * 109.47527 * 309.87835 * 20 19 18 38 38 H 1.08990 * 109.47700 * 59.99882 * 21 20 19 39 39 H 1.09006 * 109.46841 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.46671 * 299.99340 * 21 20 19 41 41 H 1.09001 * 110.66401 * 202.35655 * 22 19 18 42 42 H 1.09006 * 110.66957 * 79.22964 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6100 1.9799 0.8452 5 6 3.5425 1.4440 0.1156 6 1 4.1436 1.8900 -0.6630 7 6 4.1499 0.8759 1.2153 8 7 5.4612 0.8778 1.3164 9 14 3.1103 0.1050 2.5623 10 1 2.8868 -1.3304 2.2546 11 1 3.8152 0.2284 3.8635 12 1 1.8025 0.8041 2.6395 13 7 1.6445 2.1016 -1.2519 14 6 1.7550 1.1796 -2.3901 15 6 0.2865 2.6526 -1.1505 16 1 -0.4244 1.8740 -0.8735 17 6 -0.1306 3.3271 -2.4775 18 6 -0.8958 4.5966 -2.0602 19 7 -0.9323 4.6150 -0.5817 20 6 -0.8654 5.9905 -0.0705 21 6 -2.1723 6.7182 -0.3924 22 6 0.2443 3.8245 -0.1380 23 1 -0.3634 -0.9956 0.2547 24 1 -0.3633 0.7184 0.7350 25 1 -0.3634 0.2773 -0.9895 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8885 0.4778 2.0900 29 1 1.0320 0.3721 -2.2750 30 1 1.5532 1.7189 -3.3155 31 1 2.7619 0.7636 -2.4243 32 1 0.7512 3.5916 -3.0610 33 1 -0.7799 2.6652 -3.0506 34 1 -0.3772 5.4812 -2.4299 35 1 -1.9097 4.5670 -2.4592 36 1 -0.7174 5.9701 1.0091 37 1 -0.0329 6.5132 -0.5416 38 1 -3.0047 6.1956 0.0786 39 1 -2.1229 7.7387 -0.0127 40 1 -2.3203 6.7386 -1.4721 41 1 0.0972 3.4519 0.8758 42 1 1.1546 4.4207 -0.2015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688491664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:54 Heat of formation + Delta-G solvation = 2.286046 kcal Electronic energy + Delta-G solvation = -18801.783002 eV Core-core repulsion = 16202.493969 eV Total energy + Delta-G solvation = -2599.289033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74413 -38.54406 -34.95263 -33.83237 -32.36765 -30.35677 -29.70059 -28.79059 -25.93539 -24.38626 -23.78929 -22.06470 -21.18316 -20.39575 -18.75484 -17.73965 -16.99027 -16.71773 -15.93679 -15.72036 -15.26426 -14.93272 -14.79332 -14.36726 -14.06060 -13.73216 -13.65007 -13.45243 -13.20783 -12.94149 -12.86268 -12.51722 -12.42151 -12.34571 -12.17394 -11.97802 -11.83370 -11.76899 -11.62160 -11.42798 -11.18226 -11.01038 -10.71640 -9.40470 -8.76779 -8.26760 -6.27633 1.27684 1.33771 1.43322 2.31448 2.89299 3.06844 3.49196 3.70955 3.81726 4.14351 4.18611 4.27913 4.28400 4.36323 4.42007 4.43949 4.54172 4.63124 4.64886 4.75897 4.79830 4.86912 4.93723 4.95680 4.98170 5.00466 5.05791 5.07918 5.11704 5.19347 5.27156 5.33422 5.39167 5.49447 5.67513 5.88247 6.11270 6.13192 6.52782 6.76634 6.79517 7.36832 8.90602 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.007356 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.114907 B = 3805.495455 C = 4078.304287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.163 4.163 3 C 0.194 3.806 4 H 0.028 0.972 5 C -0.495 4.495 6 H 0.034 0.966 7 C 0.011 3.989 8 N -0.951 5.951 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.300 1.300 12 H -0.249 1.249 13 N -0.534 5.534 14 C 0.034 3.966 15 C 0.061 3.939 16 H 0.073 0.927 17 C -0.120 4.120 18 C 0.043 3.957 19 N -0.521 5.521 20 C 0.036 3.964 21 C -0.136 4.136 22 C 0.049 3.951 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.034 5.487 -5.488 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.086 3.914 4 H 0.046 0.954 5 C -0.534 4.534 6 H 0.052 0.948 7 C -0.185 4.185 8 N -0.593 5.593 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.228 1.228 12 H -0.173 1.173 13 N -0.258 5.258 14 C -0.114 4.114 15 C -0.047 4.047 16 H 0.090 0.910 17 C -0.158 4.158 18 C -0.085 4.085 19 N -0.246 5.246 20 C -0.092 4.092 21 C -0.193 4.193 22 C -0.079 4.079 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.070 5.644 -5.281 18.738 hybrid contribution 0.898 -0.728 0.759 1.383 sum -16.172 4.916 -4.522 17.497 Atomic orbital electron populations 1.22065 0.94772 1.01794 1.02021 1.22545 0.96338 1.00313 1.00984 1.19561 0.93520 0.89414 0.88940 0.95410 1.21235 0.91442 1.35453 1.05250 0.94788 1.25736 0.95722 0.96737 1.00346 1.70045 1.10477 1.47644 1.31094 0.85913 0.79521 0.79466 0.77870 1.19437 1.22813 1.17312 1.62095 1.22998 1.36503 1.04157 1.22302 1.00525 0.95059 0.93506 1.22923 0.89934 0.96082 0.95796 0.90994 1.22482 0.99973 0.96847 0.96503 1.22861 1.00981 0.96931 0.87733 1.64791 1.38763 1.12593 1.08436 1.22330 0.98477 0.88119 1.00255 1.21677 0.96018 0.99719 1.01935 1.23043 0.91567 0.94784 0.98524 0.91903 0.93115 0.91003 0.91564 0.94587 0.92721 0.94459 0.90726 0.93733 0.91290 0.89592 0.93686 0.88822 0.91352 0.95164 0.92093 0.91052 0.92335 0.91761 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 8.08 71.98 0.58 -4.21 16 2 C -0.16 -6.69 4.38 30.59 0.13 -6.56 16 3 C 0.19 8.94 1.37 44.16 0.06 9.00 16 4 H 0.03 1.34 5.55 -2.39 -0.01 1.33 16 5 C -0.50 -28.51 8.92 25.60 0.23 -28.28 16 6 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 7 C 0.01 0.65 5.45 84.65 0.46 1.11 16 8 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 9 Si 0.94 45.60 24.41 68.60 1.67 47.27 16 10 H -0.27 -12.33 6.83 99.48 0.68 -11.65 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 13 N -0.53 -21.20 4.44 -869.17 -3.86 -25.06 16 14 C 0.03 1.19 7.77 127.69 0.99 2.19 16 15 C 0.06 1.99 2.35 46.12 0.11 2.09 16 16 H 0.07 2.26 4.12 -2.38 -0.01 2.25 16 17 C -0.12 -3.08 5.45 31.47 0.17 -2.91 16 18 C 0.04 1.00 5.79 86.45 0.50 1.50 16 19 N -0.52 -14.10 5.27 -883.03 -4.65 -18.75 16 20 C 0.04 0.86 5.48 86.30 0.47 1.33 16 21 C -0.14 -2.42 9.97 71.98 0.72 -1.70 16 22 C 0.05 1.64 5.26 86.65 0.46 2.10 16 23 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.05 1.64 7.63 -2.38 -0.02 1.62 16 25 H 0.07 2.06 4.90 -2.39 -0.01 2.05 16 26 H 0.07 2.70 6.14 -2.38 -0.01 2.69 16 27 H 0.04 1.59 3.22 -2.39 -0.01 1.58 16 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.04 1.18 5.13 -2.39 -0.01 1.16 16 30 H 0.07 2.21 6.66 -2.39 -0.02 2.19 16 31 H 0.04 1.80 7.64 -2.39 -0.02 1.79 16 32 H 0.07 1.90 7.29 -2.39 -0.02 1.88 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.03 7.57 -2.38 -0.02 1.01 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 37 H 0.03 0.74 7.82 -2.38 -0.02 0.72 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.06 0.97 7.52 -2.39 -0.02 0.95 16 41 H 0.06 2.27 7.56 -2.39 -0.02 2.25 16 42 H 0.03 1.27 8.02 -2.38 -0.02 1.25 16 Total: -1.00 -65.19 300.75 -0.75 -65.94 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.89 Total: 14.97 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.88 Total: -24.32 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -8.21 Total: -103.87 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.67 Total: 47.27 kcal Total: -65.19 -0.75 -65.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688491664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.228 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds