Wall clock time and date at job start Mon Mar 30 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46607 * 2 1 4 4 H 1.08996 * 109.47502 * 305.76739 * 3 2 1 5 5 C 1.50700 * 109.47385 * 65.77188 * 3 2 1 6 6 H 1.08006 * 120.00188 * 84.59633 * 5 3 2 7 7 C 1.37879 * 119.99950 * 264.60213 * 5 3 2 8 8 N 1.31509 * 120.00003 * 353.62950 * 7 5 3 9 9 Si 1.86802 * 119.99842 * 173.63483 * 7 5 3 10 10 H 1.48497 * 109.47373 * 89.99752 * 9 7 5 11 11 H 1.48504 * 109.46860 * 210.00071 * 9 7 5 12 12 H 1.48501 * 109.46946 * 329.99216 * 9 7 5 13 13 N 1.46905 * 109.46942 * 185.76673 * 3 2 1 14 14 C 1.46897 * 111.00077 * 308.08876 * 13 3 2 15 15 C 1.46904 * 110.99566 * 72.04039 * 13 3 2 16 16 H 1.09007 * 110.28729 * 302.19498 * 15 13 3 17 17 C 1.54255 * 110.32489 * 64.32339 * 15 13 3 18 18 C 1.54383 * 105.05866 * 118.89753 * 17 15 13 19 19 N 1.48562 * 104.59620 * 23.85140 * 18 17 15 20 20 C 1.46898 * 111.00018 * 200.96094 * 19 18 17 21 21 C 1.53001 * 109.47116 * 290.12455 * 20 19 18 22 22 C 1.48723 * 104.28716 * 320.57410 * 19 18 17 23 23 H 1.08994 * 109.47152 * 56.07908 * 1 2 3 24 24 H 1.09010 * 109.46893 * 176.07335 * 1 2 3 25 25 H 1.09002 * 109.47536 * 296.07279 * 1 2 3 26 26 H 1.08997 * 109.47116 * 119.99946 * 2 1 3 27 27 H 1.08995 * 109.47166 * 240.00100 * 2 1 3 28 28 H 0.97000 * 120.00103 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47442 * 59.99852 * 14 13 3 30 30 H 1.09001 * 109.46934 * 180.02562 * 14 13 3 31 31 H 1.09001 * 109.47048 * 299.99331 * 14 13 3 32 32 H 1.09002 * 110.32434 * 237.78605 * 17 15 13 33 33 H 1.08996 * 110.32432 * 0.02562 * 17 15 13 34 34 H 1.09007 * 110.41255 * 142.63060 * 18 17 15 35 35 H 1.09003 * 110.41005 * 264.95585 * 18 17 15 36 36 H 1.09002 * 109.47180 * 50.12518 * 20 19 18 37 37 H 1.08994 * 109.46933 * 170.12827 * 20 19 18 38 38 H 1.09002 * 109.47148 * 300.00083 * 21 20 19 39 39 H 1.09002 * 109.46798 * 60.00065 * 21 20 19 40 40 H 1.08994 * 109.47002 * 179.97438 * 21 20 19 41 41 H 1.08989 * 110.38980 * 280.64275 * 22 19 18 42 42 H 1.08997 * 110.50527 * 158.14559 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5947 1.9853 -0.8338 5 6 1.6576 2.1105 1.2956 6 1 2.2822 1.9926 2.1689 7 6 0.5104 2.8721 1.3664 8 7 -0.1829 3.1194 0.2766 9 14 -0.0590 3.5527 3.0102 10 1 0.5457 4.8914 3.2279 11 1 -1.5392 3.6721 3.0105 12 1 0.3638 2.6354 4.0988 13 7 3.5023 1.4449 -0.1392 14 6 4.1274 0.5641 0.8565 15 6 3.9021 1.0668 -1.5013 16 1 3.5049 0.0832 -1.7524 17 6 3.4088 2.1188 -2.5159 18 6 4.6907 2.6744 -3.1728 19 7 5.6985 1.5971 -2.9972 20 6 7.0631 2.1296 -3.1084 21 6 7.3356 2.5351 -4.5583 22 6 5.4405 1.0726 -1.6296 23 1 -0.3633 0.5735 -0.8527 24 1 -0.3633 -1.0254 -0.0704 25 1 -0.3634 0.4517 0.9231 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 -0.9898 3.6554 0.3262 29 1 3.7649 -0.4546 0.7190 30 1 5.2100 0.5850 0.7314 31 1 3.8712 0.9089 1.8583 32 1 2.7711 1.6513 -3.2662 33 1 2.8705 2.9160 -2.0033 34 1 4.5218 2.8679 -4.2322 35 1 5.0129 3.5849 -2.6674 36 1 7.1670 3.0009 -2.4618 37 1 7.7775 1.3644 -2.8048 38 1 7.2317 1.6638 -5.2050 39 1 6.6212 3.3002 -4.8620 40 1 8.3479 2.9306 -4.6408 41 1 5.8819 1.7305 -0.8811 42 1 5.8343 0.0614 -1.5280 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688491668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:57 Heat of formation + Delta-G solvation = 6.208261 kcal Electronic energy + Delta-G solvation = -18579.822117 eV Core-core repulsion = 15980.703164 eV Total energy + Delta-G solvation = -2599.118953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.09012 -36.65720 -33.34022 -31.94028 -30.82196 -28.98954 -27.56033 -26.35559 -24.66068 -22.67893 -22.42582 -20.43834 -20.34414 -18.19225 -16.41469 -15.86016 -15.57331 -14.75647 -14.37171 -14.13164 -13.60813 -13.44848 -13.10867 -12.73426 -12.60327 -12.30916 -12.14380 -11.62874 -11.37583 -11.17981 -11.08581 -10.90320 -10.80432 -10.78436 -10.70181 -10.46016 -10.29544 -10.19941 -10.10786 -9.73816 -9.26975 -8.91060 -8.37413 -8.24604 -7.04228 -5.99400 -3.99053 3.31677 3.38819 3.41899 4.19725 4.44819 4.97821 5.04608 5.12487 5.24575 5.41691 5.47353 5.54249 5.64768 5.76630 5.82278 5.96191 6.01031 6.07360 6.13822 6.17005 6.25682 6.31895 6.37417 6.41590 6.45929 6.60523 6.64976 6.72857 6.80306 6.96337 7.10098 7.20617 7.26594 7.30931 7.57165 7.61295 7.88642 8.15290 8.43277 8.67193 9.07483 9.62537 11.09181 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031928 B = 0.006243 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.769799 B = 4483.879568 C = 4623.813273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.140 4.140 3 C 0.198 3.802 4 H 0.077 0.923 5 C -0.493 4.493 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.889 5.889 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.526 5.526 14 C 0.030 3.970 15 C 0.079 3.921 16 H 0.040 0.960 17 C -0.115 4.115 18 C 0.039 3.961 19 N -0.515 5.515 20 C 0.040 3.960 21 C -0.145 4.145 22 C 0.041 3.959 23 H 0.051 0.949 24 H 0.014 0.986 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.021 0.979 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 -2.683 -5.750 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.092 3.908 4 H 0.094 0.906 5 C -0.531 4.531 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.528 5.528 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.250 5.250 14 C -0.119 4.119 15 C -0.031 4.031 16 H 0.058 0.942 17 C -0.154 4.154 18 C -0.089 4.089 19 N -0.240 5.240 20 C -0.089 4.089 21 C -0.203 4.203 22 C -0.087 4.087 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.563 -2.511 -6.143 11.640 hybrid contribution -0.529 0.163 1.403 1.509 sum 9.034 -2.348 -4.740 10.468 Atomic orbital electron populations 1.21413 0.95931 0.97128 1.03182 1.22208 0.96828 1.01325 0.97579 1.19677 0.80682 0.90805 0.99615 0.90555 1.20942 1.06836 1.29906 0.95441 0.92743 1.24866 0.96991 0.95427 0.96060 1.69915 1.17066 1.39092 1.26729 0.86683 0.77738 0.79395 0.84681 1.20786 1.21330 1.20012 1.62773 1.12493 1.49695 1.00035 1.22253 0.97165 0.94560 0.97876 1.22265 0.92841 0.96679 0.91299 0.94236 1.22358 0.96261 0.99537 0.97201 1.23074 0.92577 0.93068 1.00213 1.65421 1.02420 1.29601 1.26567 1.22196 0.91270 0.98347 0.97078 1.21732 1.00678 1.01554 0.96309 1.23189 0.96738 0.99581 0.89215 0.93015 0.96695 0.91984 0.93996 0.96044 0.93037 0.96605 0.93924 0.91278 0.91932 0.89120 0.90926 0.93868 0.94785 0.91278 0.92075 0.92746 0.92721 0.92827 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.02 37.16 0.34 -2.33 16 2 C -0.14 -3.12 4.47 -26.73 -0.12 -3.24 16 3 C 0.20 4.76 1.73 -68.86 -0.12 4.64 16 4 H 0.08 2.04 5.48 -51.93 -0.28 1.75 16 5 C -0.49 -13.04 7.63 -34.44 -0.26 -13.30 16 6 H 0.05 1.46 6.48 -52.48 -0.34 1.12 16 7 C 0.07 1.84 4.34 -17.82 -0.08 1.76 16 8 N -0.89 -24.53 12.27 55.43 0.68 -23.85 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.53 -11.20 4.46 -226.64 -1.01 -12.21 16 14 C 0.03 0.58 8.51 60.06 0.51 1.09 16 15 C 0.08 1.47 2.62 -66.33 -0.17 1.30 16 16 H 0.04 0.77 6.59 -51.93 -0.34 0.43 16 17 C -0.12 -2.10 5.98 -25.35 -0.15 -2.25 16 18 C 0.04 0.60 5.74 -2.18 -0.01 0.59 16 19 N -0.52 -7.77 5.37 -229.83 -1.23 -9.00 16 20 C 0.04 0.50 5.53 -3.82 -0.02 0.48 16 21 C -0.15 -1.54 9.97 37.16 0.37 -1.17 16 22 C 0.04 0.66 4.82 -2.09 -0.01 0.65 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 25 H 0.06 1.51 6.81 -51.93 -0.35 1.16 16 26 H 0.04 0.93 6.68 -51.93 -0.35 0.58 16 27 H 0.02 0.45 6.55 -51.93 -0.34 0.11 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.02 0.30 6.33 -51.93 -0.33 -0.03 16 30 H 0.04 0.71 6.55 -51.93 -0.34 0.37 16 31 H 0.07 1.41 6.59 -51.93 -0.34 1.07 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.90 6.85 -51.93 -0.36 1.55 16 34 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 35 H 0.04 0.69 7.83 -51.93 -0.41 0.28 16 36 H 0.03 0.44 7.88 -51.93 -0.41 0.03 16 37 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.59 7.26 -51.93 -0.38 0.21 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.90 7.35 -51.94 -0.38 0.52 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -26.87 311.59 -9.07 -35.93 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.45 Total: 0.23 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 0.27 Total: -11.79 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -1.56 Total: -45.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.87 -9.07 -35.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688491668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.141 kcal (2) G-P(sol) polarization free energy of solvation -26.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds