Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 H 1.09002 * 109.47229 * 301.29638 * 3 2 1 5 5 C 1.50699 * 109.47244 * 181.29060 * 3 2 1 6 6 H 1.08002 * 119.99778 * 244.38983 * 5 3 2 7 7 C 1.37866 * 120.00112 * 64.38766 * 5 3 2 8 8 N 1.31521 * 120.00208 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00310 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46739 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47432 * 120.00113 * 9 7 5 12 12 H 1.48502 * 109.47193 * 239.99964 * 9 7 5 13 13 N 1.46906 * 109.46662 * 61.29349 * 3 2 1 14 14 C 1.46901 * 110.99442 * 201.89071 * 13 3 2 15 15 C 1.46896 * 111.00421 * 77.93418 * 13 3 2 16 16 H 1.09008 * 110.89795 * 55.92822 * 15 13 3 17 17 C 1.55137 * 110.99393 * 292.06866 * 15 13 3 18 18 C 1.54316 * 103.02104 * 206.25561 * 17 15 13 19 19 N 1.47436 * 107.23318 * 22.27718 * 18 17 15 20 20 C 1.46899 * 111.00222 * 123.26059 * 19 18 17 21 21 C 1.53002 * 109.47091 * 69.87139 * 20 19 18 22 22 C 1.47845 * 108.56872 * 0.99296 * 19 18 17 23 23 H 1.08998 * 109.47405 * 175.22980 * 1 2 3 24 24 H 1.09001 * 109.46869 * 295.23435 * 1 2 3 25 25 H 1.09004 * 109.47050 * 55.22794 * 1 2 3 26 26 H 1.09002 * 109.46947 * 240.00451 * 2 1 3 27 27 H 1.09002 * 109.47231 * 120.00573 * 2 1 3 28 28 H 0.96990 * 120.00531 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47184 * 296.03791 * 14 13 3 30 30 H 1.08998 * 109.47533 * 56.05051 * 14 13 3 31 31 H 1.09008 * 109.46905 * 176.04947 * 14 13 3 32 32 H 1.09004 * 110.70907 * 87.86196 * 17 15 13 33 33 H 1.09006 * 110.70040 * 324.63739 * 17 15 13 34 34 H 1.09005 * 109.88463 * 262.87599 * 18 17 15 35 35 H 1.08995 * 110.02241 * 141.76092 * 18 17 15 36 36 H 1.08997 * 109.47076 * 309.87817 * 20 19 18 37 37 H 1.08998 * 109.47741 * 189.87438 * 20 19 18 38 38 H 1.08999 * 109.46768 * 59.99876 * 21 20 19 39 39 H 1.08998 * 109.47073 * 300.00709 * 21 20 19 40 40 H 1.08998 * 109.47525 * 180.02562 * 21 20 19 41 41 H 1.09004 * 110.37613 * 94.73562 * 22 19 18 42 42 H 1.09000 * 110.37760 * 217.07120 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6579 1.9630 -0.8781 5 6 3.5467 1.4425 -0.0320 6 1 4.1045 1.8405 0.8028 7 6 4.2130 0.9346 -1.1269 8 7 3.5337 0.4503 -2.1437 9 14 6.0806 0.9340 -1.1663 10 1 6.6023 1.5299 0.0899 11 1 6.5726 -0.4612 -1.2946 12 1 6.5515 1.7335 -2.3257 13 7 1.5760 2.1258 1.2148 14 6 1.5790 3.5835 1.0325 15 6 2.3853 1.7391 2.3782 16 1 3.4428 1.9325 2.1978 17 6 2.1480 0.2519 2.7507 18 6 2.4739 0.2149 4.2586 19 7 2.3241 1.5890 4.7717 20 6 1.3572 1.6361 5.8765 21 6 1.9508 0.9414 7.1037 22 6 1.8991 2.4637 3.6580 23 1 -0.3634 -1.0241 -0.0855 24 1 -0.3633 0.4381 0.9296 25 1 -0.3633 0.5861 -0.8442 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.0024 0.0926 -2.9138 29 1 2.6014 3.9281 0.8772 30 1 0.9724 3.8424 0.1647 31 1 1.1654 4.0616 1.9206 32 1 2.8240 -0.3974 2.1942 33 1 1.1097 -0.0287 2.5737 34 1 3.4979 -0.1272 4.4084 35 1 1.7814 -0.4507 4.7738 36 1 0.4405 1.1270 5.5790 37 1 1.1335 2.6748 6.1197 38 1 2.8676 1.4504 7.4013 39 1 2.1746 -0.0973 6.8605 40 1 1.2332 0.9759 7.9234 41 1 0.8138 2.5647 3.6478 42 1 2.3713 3.4424 3.7426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688491670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = 14.610780 kcal Electronic energy + Delta-G solvation = -18877.330016 eV Core-core repulsion = 16278.575424 eV Total energy + Delta-G solvation = -2598.754593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13100 -36.52165 -32.99719 -31.91665 -31.37965 -28.77154 -27.37032 -26.83816 -24.23358 -22.67944 -22.60233 -20.14978 -19.80464 -18.97566 -16.56074 -15.86894 -15.26183 -14.86227 -14.06920 -13.98078 -13.61343 -13.27509 -13.07845 -12.81708 -12.36655 -12.16554 -12.00323 -11.80991 -11.52255 -11.41678 -11.20415 -10.99401 -10.97525 -10.70607 -10.63356 -10.31290 -10.27059 -10.12623 -9.69226 -9.48511 -9.40033 -8.90088 -8.33416 -7.99825 -7.08532 -5.99440 -4.10620 3.26366 3.35418 3.39185 4.23546 4.40877 5.04643 5.18479 5.22010 5.27466 5.30786 5.51421 5.59663 5.66264 5.84357 5.89919 6.03015 6.08636 6.10043 6.19502 6.24127 6.34648 6.40229 6.47228 6.47868 6.57463 6.67786 6.68757 6.81483 6.96428 7.14937 7.16254 7.27906 7.36631 7.46014 7.64154 7.80360 7.97422 8.16010 8.31460 8.51761 9.00759 9.57183 11.02235 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.007736 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.208843 B = 3618.344457 C = 4007.916750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.544 4.544 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.532 5.532 14 C 0.035 3.965 15 C 0.085 3.915 16 H 0.072 0.928 17 C -0.125 4.125 18 C 0.040 3.960 19 N -0.531 5.531 20 C 0.047 3.953 21 C -0.146 4.146 22 C 0.046 3.954 23 H 0.023 0.977 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.260 0.740 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 0.948 11.434 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.114 4.114 15 C -0.025 4.025 16 H 0.089 0.911 17 C -0.163 4.163 18 C -0.088 4.088 19 N -0.256 5.256 20 C -0.081 4.081 21 C -0.203 4.203 22 C -0.082 4.082 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.214 0.895 11.542 12.319 hybrid contribution 1.125 -0.040 -0.675 1.313 sum -3.089 0.856 10.866 11.329 Atomic orbital electron populations 1.21696 0.99105 0.98148 1.00422 1.21869 0.92123 0.99481 1.02372 1.19268 0.92666 0.91037 0.86252 0.94559 1.21821 0.92593 1.40727 1.03094 0.91922 1.24911 0.97875 0.95080 0.95493 1.69928 1.34983 1.40669 1.06806 0.86665 0.86446 0.77705 0.77978 1.19840 1.21010 1.21118 1.62525 1.52136 1.05550 1.05442 1.22158 0.99629 0.89884 0.99775 1.22604 0.97442 0.93468 0.88974 0.91078 1.22946 1.02119 0.97885 0.93345 1.22899 1.00996 0.89380 0.95543 1.63568 1.45374 1.08226 1.08457 1.22191 0.93312 1.00380 0.92220 1.21768 1.01110 1.00704 0.96752 1.23108 0.98544 0.96393 0.90176 0.95789 0.93495 0.94459 0.90301 0.92841 0.93031 0.95714 0.92720 0.93617 0.89816 0.91080 0.91146 0.93383 0.95027 0.91419 0.92092 0.92802 0.92828 0.93381 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.51 37.16 0.35 -2.39 16 2 C -0.12 -2.77 4.80 -26.73 -0.13 -2.90 16 3 C 0.21 5.15 1.61 -68.86 -0.11 5.04 16 4 H 0.04 0.99 7.79 -51.93 -0.40 0.58 16 5 C -0.54 -14.21 7.60 -34.44 -0.26 -14.48 16 6 H 0.06 1.66 5.34 -52.49 -0.28 1.38 16 7 C 0.07 1.86 5.32 -17.82 -0.09 1.76 16 8 N -0.89 -24.79 11.64 55.43 0.65 -24.14 16 9 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 N -0.53 -10.99 3.99 -225.74 -0.90 -11.89 16 14 C 0.03 0.66 9.10 60.07 0.55 1.20 16 15 C 0.08 1.64 2.17 -65.58 -0.14 1.50 16 16 H 0.07 1.59 5.51 -51.92 -0.29 1.30 16 17 C -0.12 -2.26 4.41 -24.91 -0.11 -2.37 16 18 C 0.04 0.62 6.21 -2.84 -0.02 0.60 16 19 N -0.53 -8.21 5.16 -231.26 -1.19 -9.41 16 20 C 0.05 0.61 5.26 -3.82 -0.02 0.59 16 21 C -0.15 -1.59 9.94 37.16 0.37 -1.22 16 22 C 0.05 0.76 4.84 -2.30 -0.01 0.75 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.08 2.05 6.40 -51.93 -0.33 1.72 16 27 H 0.05 1.19 3.88 -51.93 -0.20 0.99 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.02 0.49 7.96 -51.93 -0.41 0.08 16 30 H 0.05 1.02 7.97 -51.93 -0.41 0.61 16 31 H 0.05 0.75 6.95 -51.92 -0.36 0.39 16 32 H 0.08 1.66 6.68 -51.93 -0.35 1.31 16 33 H 0.07 1.31 6.84 -51.93 -0.36 0.95 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.68 6.91 -51.93 -0.36 0.32 16 36 H 0.03 0.41 7.96 -51.93 -0.41 0.00 16 37 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.60 7.14 -51.93 -0.37 0.22 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.79 7.78 -51.93 -0.40 0.39 16 42 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -26.84 309.94 -8.83 -35.67 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.41 Total: 0.99 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 0.37 Total: -11.91 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -1.45 Total: -45.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.84 -8.83 -35.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688491670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.283 kcal (2) G-P(sol) polarization free energy of solvation -26.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds