Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 H 1.09002 * 109.47229 * 301.29638 * 3 2 1 5 5 C 1.50699 * 109.47244 * 181.29060 * 3 2 1 6 6 H 1.08002 * 119.99778 * 244.38983 * 5 3 2 7 7 C 1.37866 * 120.00112 * 64.38766 * 5 3 2 8 8 N 1.31521 * 120.00208 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00310 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46739 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47432 * 120.00113 * 9 7 5 12 12 H 1.48502 * 109.47193 * 239.99964 * 9 7 5 13 13 N 1.46906 * 109.46662 * 61.29349 * 3 2 1 14 14 C 1.46901 * 110.99442 * 201.89071 * 13 3 2 15 15 C 1.46896 * 111.00421 * 77.93418 * 13 3 2 16 16 H 1.09008 * 110.89795 * 55.92822 * 15 13 3 17 17 C 1.55137 * 110.99393 * 292.06866 * 15 13 3 18 18 C 1.54316 * 103.02104 * 206.25561 * 17 15 13 19 19 N 1.47436 * 107.23318 * 22.27718 * 18 17 15 20 20 C 1.46899 * 111.00222 * 123.26059 * 19 18 17 21 21 C 1.53002 * 109.47091 * 69.87139 * 20 19 18 22 22 C 1.47845 * 108.56872 * 0.99296 * 19 18 17 23 23 H 1.08998 * 109.47405 * 175.22980 * 1 2 3 24 24 H 1.09001 * 109.46869 * 295.23435 * 1 2 3 25 25 H 1.09004 * 109.47050 * 55.22794 * 1 2 3 26 26 H 1.09002 * 109.46947 * 240.00451 * 2 1 3 27 27 H 1.09002 * 109.47231 * 120.00573 * 2 1 3 28 28 H 0.96990 * 120.00531 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47184 * 296.03791 * 14 13 3 30 30 H 1.08998 * 109.47533 * 56.05051 * 14 13 3 31 31 H 1.09008 * 109.46905 * 176.04947 * 14 13 3 32 32 H 1.09004 * 110.70907 * 87.86196 * 17 15 13 33 33 H 1.09006 * 110.70040 * 324.63739 * 17 15 13 34 34 H 1.09005 * 109.88463 * 262.87599 * 18 17 15 35 35 H 1.08995 * 110.02241 * 141.76092 * 18 17 15 36 36 H 1.08997 * 109.47076 * 309.87817 * 20 19 18 37 37 H 1.08998 * 109.47741 * 189.87438 * 20 19 18 38 38 H 1.08999 * 109.46768 * 59.99876 * 21 20 19 39 39 H 1.08998 * 109.47073 * 300.00709 * 21 20 19 40 40 H 1.08998 * 109.47525 * 180.02562 * 21 20 19 41 41 H 1.09004 * 110.37613 * 94.73562 * 22 19 18 42 42 H 1.09000 * 110.37760 * 217.07120 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6579 1.9630 -0.8781 5 6 3.5467 1.4425 -0.0320 6 1 4.1045 1.8405 0.8028 7 6 4.2130 0.9346 -1.1269 8 7 3.5337 0.4503 -2.1437 9 14 6.0806 0.9340 -1.1663 10 1 6.6023 1.5299 0.0899 11 1 6.5726 -0.4612 -1.2946 12 1 6.5515 1.7335 -2.3257 13 7 1.5760 2.1258 1.2148 14 6 1.5790 3.5835 1.0325 15 6 2.3853 1.7391 2.3782 16 1 3.4428 1.9325 2.1978 17 6 2.1480 0.2519 2.7507 18 6 2.4739 0.2149 4.2586 19 7 2.3241 1.5890 4.7717 20 6 1.3572 1.6361 5.8765 21 6 1.9508 0.9414 7.1037 22 6 1.8991 2.4637 3.6580 23 1 -0.3634 -1.0241 -0.0855 24 1 -0.3633 0.4381 0.9296 25 1 -0.3633 0.5861 -0.8442 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.0024 0.0926 -2.9138 29 1 2.6014 3.9281 0.8772 30 1 0.9724 3.8424 0.1647 31 1 1.1654 4.0616 1.9206 32 1 2.8240 -0.3974 2.1942 33 1 1.1097 -0.0287 2.5737 34 1 3.4979 -0.1272 4.4084 35 1 1.7814 -0.4507 4.7738 36 1 0.4405 1.1270 5.5790 37 1 1.1335 2.6748 6.1197 38 1 2.8676 1.4504 7.4013 39 1 2.1746 -0.0973 6.8605 40 1 1.2332 0.9759 7.9234 41 1 0.8138 2.5647 3.6478 42 1 2.3713 3.4424 3.7426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688491670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -2.293617 kcal Electronic energy + Delta-G solvation = -18878.063046 eV Core-core repulsion = 16278.575424 eV Total energy + Delta-G solvation = -2599.487622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58214 -38.06828 -34.77942 -33.30806 -33.14800 -30.05541 -28.85907 -28.56727 -25.99080 -24.32355 -23.82270 -21.67767 -21.18188 -20.73962 -18.40030 -17.31359 -16.67139 -16.66015 -15.67896 -15.43340 -15.08831 -14.81532 -14.45370 -14.30630 -13.97802 -13.62567 -13.43142 -13.26460 -13.15321 -12.99330 -12.74670 -12.57582 -12.44208 -12.23841 -12.06374 -11.88842 -11.74313 -11.62180 -11.44577 -11.27705 -11.20103 -10.76868 -10.36583 -9.20373 -8.88618 -8.04040 -6.23319 1.34667 1.38583 1.47756 2.40408 2.99745 3.17514 3.57858 3.86632 3.91136 4.23009 4.33130 4.43414 4.51652 4.55058 4.67869 4.69773 4.72901 4.76089 4.76973 4.88952 4.95762 5.00415 5.01859 5.07419 5.11221 5.18852 5.25363 5.29632 5.38849 5.40901 5.45695 5.58219 5.72467 5.84484 6.00179 6.11301 6.22244 6.24744 6.40623 6.72327 6.99644 7.47569 8.93946 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.007736 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.208843 B = 3618.344457 C = 4007.916750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.527 5.527 14 C 0.036 3.964 15 C 0.082 3.918 16 H 0.039 0.961 17 C -0.120 4.120 18 C 0.048 3.952 19 N -0.539 5.539 20 C 0.045 3.955 21 C -0.141 4.141 22 C 0.059 3.941 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.260 0.740 29 H 0.007 0.993 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 1.015 13.588 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C 0.114 3.886 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.553 5.553 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.251 5.251 14 C -0.113 4.113 15 C -0.028 4.028 16 H 0.056 0.944 17 C -0.158 4.158 18 C -0.080 4.080 19 N -0.265 5.265 20 C -0.083 4.083 21 C -0.198 4.198 22 C -0.069 4.069 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.777 0.970 13.714 14.555 hybrid contribution 1.282 -0.026 -1.313 1.836 sum -3.494 0.943 12.401 12.919 Atomic orbital electron populations 1.21554 0.96641 0.99372 1.00560 1.21728 0.94270 0.98332 1.01011 1.19029 0.91472 0.91626 0.86459 0.98284 1.22071 0.93939 1.39920 1.02696 0.92548 1.25578 1.01629 0.95132 0.95405 1.70048 1.36323 1.41607 1.07283 0.85768 0.81994 0.77671 0.77781 1.19699 1.20626 1.20949 1.62507 1.51775 1.06313 1.04511 1.22212 0.98782 0.89006 1.01305 1.22572 0.95450 0.95059 0.89708 0.94351 1.22820 1.01404 0.96432 0.95141 1.22813 1.01505 0.90082 0.93594 1.63596 1.46622 1.07719 1.08515 1.22313 0.92855 1.01389 0.91756 1.21735 1.01420 1.00168 0.96508 1.22940 0.98753 0.96380 0.88840 0.93833 0.92411 0.95309 0.93679 0.92130 0.93110 0.97469 0.92874 0.90407 0.92161 0.91072 0.91284 0.91349 0.94718 0.90478 0.92510 0.93011 0.90699 0.92668 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.51 71.98 0.68 -4.20 16 2 C -0.12 -5.38 4.80 30.59 0.15 -5.23 16 3 C 0.22 10.91 1.61 44.17 0.07 10.98 16 4 H 0.00 -0.05 7.79 -2.39 -0.02 -0.06 16 5 C -0.55 -29.34 7.60 25.60 0.19 -29.15 16 6 H 0.06 3.07 5.34 -2.91 -0.02 3.05 16 7 C 0.02 1.22 5.32 84.65 0.45 1.67 16 8 N -0.91 -52.49 11.64 21.44 0.25 -52.24 16 9 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.53 -21.67 3.99 -868.09 -3.46 -25.14 16 14 C 0.04 1.34 9.10 127.69 1.16 2.50 16 15 C 0.08 3.12 2.17 46.30 0.10 3.22 16 16 H 0.04 1.74 5.51 -2.38 -0.01 1.73 16 17 C -0.12 -4.22 4.41 31.77 0.14 -4.08 16 18 C 0.05 1.40 6.21 86.65 0.54 1.94 16 19 N -0.54 -15.35 5.16 -885.58 -4.57 -19.92 16 20 C 0.04 1.00 5.26 86.30 0.45 1.45 16 21 C -0.14 -2.61 9.94 71.98 0.72 -1.89 16 22 C 0.06 1.83 4.84 86.77 0.42 2.25 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 2.14 7.31 -2.39 -0.02 2.12 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 2.41 6.40 -2.39 -0.02 2.39 16 27 H 0.06 2.72 3.88 -2.39 -0.01 2.71 16 28 H 0.26 14.27 8.31 -92.72 -0.77 13.50 16 29 H 0.01 0.27 7.96 -2.39 -0.02 0.25 16 30 H 0.05 1.98 7.97 -2.39 -0.02 1.96 16 31 H 0.08 2.40 6.95 -2.38 -0.02 2.38 16 32 H 0.06 2.40 6.68 -2.39 -0.02 2.38 16 33 H 0.07 2.50 6.84 -2.38 -0.02 2.49 16 34 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.07 1.72 6.91 -2.39 -0.02 1.70 16 36 H 0.03 0.77 7.96 -2.39 -0.02 0.75 16 37 H 0.08 1.59 8.07 -2.39 -0.02 1.57 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 0.98 7.14 -2.39 -0.02 0.96 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.65 7.78 -2.38 -0.02 1.63 16 42 H 0.07 2.19 8.03 -2.39 -0.02 2.17 16 Total: -1.00 -58.05 309.94 0.29 -57.76 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.97 Total: 14.14 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 5.08 Total: -20.56 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -7.78 Total: -97.29 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -58.05 0.29 -57.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688491670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.466 kcal (2) G-P(sol) polarization free energy of solvation -58.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds