Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47605 * 2 1 4 4 H 1.09003 * 109.46601 * 54.99783 * 3 2 1 5 5 C 1.50703 * 109.47325 * 174.99967 * 3 2 1 6 6 H 1.07999 * 119.99831 * 120.00056 * 5 3 2 7 7 C 1.37874 * 119.99628 * 300.00182 * 5 3 2 8 8 N 1.31515 * 120.00551 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99656 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47302 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47214 * 120.00165 * 9 7 5 12 12 H 1.48503 * 109.47168 * 239.99919 * 9 7 5 13 13 N 1.46897 * 109.47156 * 295.00312 * 3 2 1 14 14 C 1.48540 * 110.99957 * 297.39257 * 13 3 2 15 15 C 1.54931 * 103.22901 * 200.28052 * 14 13 3 16 16 C 1.54594 * 102.92127 * 37.41471 * 15 14 13 17 17 H 1.08998 * 110.39379 * 97.00514 * 16 15 14 18 18 C 1.53007 * 110.30656 * 219.12630 * 16 15 14 19 19 N 1.46893 * 109.47244 * 290.71447 * 18 16 15 20 20 C 1.46901 * 111.00249 * 170.00177 * 19 18 16 21 21 C 1.46900 * 111.00078 * 293.95627 * 19 18 16 22 22 C 1.47898 * 111.00375 * 180.02562 * 13 3 2 23 23 H 1.08996 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47210 * 300.00173 * 1 2 3 25 25 H 1.09006 * 109.46996 * 59.99893 * 1 2 3 26 26 H 1.09002 * 109.47210 * 239.99827 * 2 1 3 27 27 H 1.09006 * 109.46996 * 120.00107 * 2 1 3 28 28 H 0.97003 * 120.00226 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.66346 * 318.71752 * 14 13 3 30 30 H 1.09007 * 110.66430 * 81.67560 * 14 13 3 31 31 H 1.08999 * 110.72585 * 279.05537 * 15 14 13 32 32 H 1.09000 * 110.72718 * 155.76921 * 15 14 13 33 33 H 1.09009 * 109.46774 * 170.71514 * 18 16 15 34 34 H 1.08996 * 109.46960 * 50.71731 * 18 16 15 35 35 H 1.09002 * 109.47401 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46874 * 60.00002 * 20 19 18 37 37 H 1.09004 * 109.46970 * 300.00135 * 20 19 18 38 38 H 1.09005 * 109.47361 * 296.04276 * 21 19 18 39 39 H 1.08997 * 109.47533 * 56.04494 * 21 19 18 40 40 H 1.08999 * 109.47597 * 176.04656 * 21 19 18 41 41 H 1.09001 * 109.91494 * 26.48127 * 22 13 3 42 42 H 1.09008 * 110.07932 * 265.28973 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8810 1.3818 10 1 6.5988 1.5460 0.1943 11 1 6.3991 1.6164 2.6103 12 1 6.4970 -0.5178 1.4630 13 7 1.6515 2.0993 -1.2552 14 6 2.2774 1.4281 -2.4231 15 6 2.2101 2.5089 -3.5312 16 6 2.4847 3.8173 -2.7549 17 1 3.5357 4.0943 -2.8371 18 6 1.5963 4.9451 -3.2841 19 7 2.0294 5.3154 -4.6380 20 6 1.0626 6.2227 -5.2704 21 6 3.3728 5.9094 -4.6169 22 6 2.1292 3.4985 -1.2913 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0606 2.9503 29 1 3.3123 1.1637 -2.2058 30 1 1.7078 0.5439 -2.7095 31 1 1.2208 2.5318 -3.9881 32 1 2.9799 2.3382 -4.2838 33 1 1.6781 5.8109 -2.6268 34 1 0.5602 4.6080 -3.3135 35 1 1.4079 6.4813 -6.2714 36 1 0.9705 7.1295 -4.6726 37 1 0.0921 5.7308 -5.3362 38 1 3.3489 6.8423 -4.0536 39 1 4.0689 5.2170 -4.1435 40 1 3.6977 6.1097 -5.6378 41 1 3.0132 3.6054 -0.6626 42 1 1.3442 4.1710 -0.9451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688599830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = 2.173121 kcal Electronic energy + Delta-G solvation = -18423.762926 eV Core-core repulsion = 15824.468996 eV Total energy + Delta-G solvation = -2599.293930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.82331 -36.94454 -34.06421 -31.68959 -30.09574 -28.68935 -27.58480 -26.39953 -25.24000 -22.93147 -21.67988 -20.99921 -19.27000 -18.89653 -16.36858 -15.81369 -15.15856 -15.06807 -14.78520 -14.08717 -13.89878 -13.14030 -12.92961 -12.71116 -12.38662 -12.34405 -12.08776 -11.91339 -11.67535 -11.36116 -11.24364 -11.05560 -10.86366 -10.55321 -10.52438 -10.37416 -10.10623 -9.90222 -9.88443 -9.59173 -9.39042 -9.01262 -8.33994 -8.27285 -7.10792 -5.96960 -4.09689 3.25801 3.34679 3.37558 4.03102 4.40376 5.06392 5.15621 5.21908 5.28117 5.31628 5.36222 5.52678 5.57457 5.63714 5.80377 5.83548 5.90620 6.02705 6.15618 6.22314 6.38711 6.45653 6.51418 6.57053 6.69454 6.74465 6.79506 6.90684 7.03079 7.09560 7.12879 7.14291 7.23717 7.37520 7.64773 7.78115 8.02858 8.19683 8.31490 8.48714 9.01565 9.56889 11.02161 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.006824 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.382973 B = 4102.229650 C = 4857.977710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.203 3.797 4 H 0.037 0.963 5 C -0.539 4.539 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.514 5.514 14 C 0.037 3.963 15 C -0.103 4.103 16 C -0.094 4.094 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.545 5.545 20 C 0.026 3.974 21 C 0.022 3.978 22 C 0.044 3.956 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 7.761 -10.693 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.096 3.904 4 H 0.055 0.945 5 C -0.578 4.578 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.238 5.238 14 C -0.091 4.091 15 C -0.141 4.141 16 C -0.113 4.113 17 H 0.084 0.916 18 C -0.060 4.060 19 N -0.269 5.269 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.085 4.085 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.286 7.216 -10.804 13.401 hybrid contribution 1.976 0.767 0.803 2.267 sum -1.310 7.983 -10.000 12.863 Atomic orbital electron populations 1.21712 0.98907 0.98360 1.00572 1.21564 0.92216 0.99158 1.01900 1.19401 0.93032 0.91300 0.86628 0.94532 1.21763 0.92865 1.37849 1.05357 0.92379 1.24915 0.97711 0.95119 0.95739 1.69889 1.34637 1.38411 1.09402 0.86652 0.86363 0.77734 0.77933 1.19953 1.21066 1.21004 1.65089 1.53657 1.00784 1.04285 1.23123 0.99081 0.96287 0.90628 1.22377 1.00856 0.93968 0.96873 1.22020 0.98528 0.94978 0.95765 0.91552 1.22263 0.99676 0.96869 0.87217 1.61970 1.02415 1.41822 1.20706 1.22356 0.96570 0.94507 0.98845 1.22425 0.91188 0.97738 1.01315 1.22715 0.99382 0.92331 0.94104 0.95652 0.94257 0.93379 0.95002 0.89083 0.92995 0.92585 0.91914 0.91772 0.92518 0.95273 0.90514 0.91779 0.96050 0.91449 0.95994 0.90865 0.91858 0.92206 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.80 37.16 0.36 -2.51 16 2 C -0.11 -2.64 5.14 -26.73 -0.14 -2.78 16 3 C 0.20 5.04 1.81 -68.87 -0.12 4.91 16 4 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.54 -14.30 6.34 -34.44 -0.22 -14.52 16 6 H 0.06 1.55 6.03 -52.49 -0.32 1.24 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.27 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.51 -10.98 4.76 -223.90 -1.07 -12.05 16 14 C 0.04 0.73 5.29 -1.90 -0.01 0.72 16 15 C -0.10 -1.71 6.48 -24.87 -0.16 -1.87 16 16 C -0.09 -1.53 2.95 -89.28 -0.26 -1.79 16 17 H 0.07 1.09 6.24 -51.93 -0.32 0.77 16 18 C 0.07 0.95 4.05 -3.82 -0.02 0.93 16 19 N -0.55 -6.98 4.88 -251.25 -1.23 -8.20 16 20 C 0.03 0.27 9.57 60.07 0.57 0.84 16 21 C 0.02 0.25 9.41 60.06 0.57 0.82 16 22 C 0.04 0.85 6.00 -2.78 -0.02 0.84 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 26 H 0.03 0.75 6.76 -51.93 -0.35 0.40 16 27 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.06 1.24 6.07 -51.93 -0.31 0.92 16 30 H 0.06 1.23 7.55 -51.93 -0.39 0.83 16 31 H 0.06 1.05 7.76 -51.93 -0.40 0.64 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.41 8.12 -51.92 -0.42 -0.02 16 34 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 38 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.90 6.19 -51.93 -0.32 0.58 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.31 6.28 -51.93 -0.33 0.98 16 42 H 0.06 1.04 7.68 -51.92 -0.40 0.65 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -27.32 315.79 -9.10 -36.41 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.63 Total: -0.02 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 0.46 Total: -12.67 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -1.67 Total: -44.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.32 -9.10 -36.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688599830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.584 kcal (2) G-P(sol) polarization free energy of solvation -27.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds