Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47605 * 2 1 4 4 H 1.09003 * 109.46601 * 54.99783 * 3 2 1 5 5 C 1.50703 * 109.47325 * 174.99967 * 3 2 1 6 6 H 1.07999 * 119.99831 * 120.00056 * 5 3 2 7 7 C 1.37874 * 119.99628 * 300.00182 * 5 3 2 8 8 N 1.31515 * 120.00551 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99656 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47302 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47214 * 120.00165 * 9 7 5 12 12 H 1.48503 * 109.47168 * 239.99919 * 9 7 5 13 13 N 1.46897 * 109.47156 * 295.00312 * 3 2 1 14 14 C 1.48540 * 110.99957 * 297.39257 * 13 3 2 15 15 C 1.54931 * 103.22901 * 200.28052 * 14 13 3 16 16 C 1.54594 * 102.92127 * 37.41471 * 15 14 13 17 17 H 1.08998 * 110.39379 * 97.00514 * 16 15 14 18 18 C 1.53007 * 110.30656 * 219.12630 * 16 15 14 19 19 N 1.46893 * 109.47244 * 290.71447 * 18 16 15 20 20 C 1.46901 * 111.00249 * 170.00177 * 19 18 16 21 21 C 1.46900 * 111.00078 * 293.95627 * 19 18 16 22 22 C 1.47898 * 111.00375 * 180.02562 * 13 3 2 23 23 H 1.08996 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47210 * 300.00173 * 1 2 3 25 25 H 1.09006 * 109.46996 * 59.99893 * 1 2 3 26 26 H 1.09002 * 109.47210 * 239.99827 * 2 1 3 27 27 H 1.09006 * 109.46996 * 120.00107 * 2 1 3 28 28 H 0.97003 * 120.00226 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.66346 * 318.71752 * 14 13 3 30 30 H 1.09007 * 110.66430 * 81.67560 * 14 13 3 31 31 H 1.08999 * 110.72585 * 279.05537 * 15 14 13 32 32 H 1.09000 * 110.72718 * 155.76921 * 15 14 13 33 33 H 1.09009 * 109.46774 * 170.71514 * 18 16 15 34 34 H 1.08996 * 109.46960 * 50.71731 * 18 16 15 35 35 H 1.09002 * 109.47401 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46874 * 60.00002 * 20 19 18 37 37 H 1.09004 * 109.46970 * 300.00135 * 20 19 18 38 38 H 1.09005 * 109.47361 * 296.04276 * 21 19 18 39 39 H 1.08997 * 109.47533 * 56.04494 * 21 19 18 40 40 H 1.08999 * 109.47597 * 176.04656 * 21 19 18 41 41 H 1.09001 * 109.91494 * 26.48127 * 22 13 3 42 42 H 1.09008 * 110.07932 * 265.28973 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8810 1.3818 10 1 6.5988 1.5460 0.1943 11 1 6.3991 1.6164 2.6103 12 1 6.4970 -0.5178 1.4630 13 7 1.6515 2.0993 -1.2552 14 6 2.2774 1.4281 -2.4231 15 6 2.2101 2.5089 -3.5312 16 6 2.4847 3.8173 -2.7549 17 1 3.5357 4.0943 -2.8371 18 6 1.5963 4.9451 -3.2841 19 7 2.0294 5.3154 -4.6380 20 6 1.0626 6.2227 -5.2704 21 6 3.3728 5.9094 -4.6169 22 6 2.1292 3.4985 -1.2913 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0606 2.9503 29 1 3.3123 1.1637 -2.2058 30 1 1.7078 0.5439 -2.7095 31 1 1.2208 2.5318 -3.9881 32 1 2.9799 2.3382 -4.2838 33 1 1.6781 5.8109 -2.6268 34 1 0.5602 4.6080 -3.3135 35 1 1.4079 6.4813 -6.2714 36 1 0.9705 7.1295 -4.6726 37 1 0.0921 5.7308 -5.3362 38 1 3.3489 6.8423 -4.0536 39 1 4.0689 5.2170 -4.1435 40 1 3.6977 6.1097 -5.6378 41 1 3.0132 3.6054 -0.6626 42 1 1.3442 4.1710 -0.9451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688599830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = -15.177371 kcal Electronic energy + Delta-G solvation = -18424.515299 eV Core-core repulsion = 15824.468996 eV Total energy + Delta-G solvation = -2600.046304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32089 -38.18977 -35.78317 -33.64684 -31.65920 -30.20702 -28.46017 -28.21884 -26.64624 -24.73157 -22.92099 -22.55902 -20.79005 -20.61875 -18.35815 -17.27135 -16.73511 -16.12737 -16.04751 -15.72418 -15.29760 -14.90458 -14.36821 -14.29010 -13.98995 -13.81663 -13.31063 -13.21195 -12.94985 -12.85834 -12.75114 -12.58268 -12.45815 -12.31160 -12.11472 -11.86648 -11.78461 -11.62398 -11.47354 -11.35725 -11.14333 -10.92304 -10.42351 -9.23603 -8.94975 -8.02785 -6.24144 1.35101 1.38277 1.47605 2.39772 3.04878 3.15825 3.59809 3.92647 3.97604 4.07817 4.32516 4.48714 4.54422 4.59859 4.65040 4.67393 4.72217 4.75308 4.79860 4.88098 4.92513 5.00121 5.04398 5.05832 5.07567 5.19664 5.23875 5.30339 5.33319 5.44855 5.47189 5.58814 5.63324 5.80246 6.06094 6.11778 6.17693 6.21260 6.41414 6.57497 6.97902 7.45503 8.92865 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.006824 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.382973 B = 4102.229650 C = 4857.977710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.210 3.790 4 H 0.000 1.000 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.514 5.514 14 C 0.037 3.963 15 C -0.088 4.088 16 C -0.084 4.084 17 H 0.065 0.935 18 C 0.077 3.923 19 N -0.556 5.556 20 C 0.026 3.974 21 C 0.021 3.979 22 C 0.044 3.956 23 H 0.046 0.954 24 H 0.032 0.968 25 H 0.056 0.944 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.029 0.971 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 8.525 -12.545 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.237 5.237 14 C -0.091 4.091 15 C -0.126 4.126 16 C -0.103 4.103 17 H 0.083 0.917 18 C -0.051 4.051 19 N -0.280 5.280 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.085 4.085 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.048 0.952 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.377 7.992 -12.673 15.359 hybrid contribution 1.987 0.557 1.362 2.473 sum -1.390 8.549 -11.311 14.246 Atomic orbital electron populations 1.21573 0.96308 0.99816 1.00643 1.21414 0.94508 0.98143 1.00299 1.19165 0.91937 0.91597 0.87068 0.98231 1.21964 0.93922 1.37328 1.05126 0.93018 1.25614 1.01719 0.95046 0.95604 1.70014 1.36155 1.39149 1.09826 0.85707 0.81566 0.77726 0.77844 1.19601 1.20780 1.20621 1.65026 1.53683 1.01634 1.03372 1.23122 0.97362 0.97504 0.91090 1.22284 1.01919 0.92498 0.95908 1.21904 0.99082 0.95941 0.93405 0.91659 1.22067 0.98903 0.95887 0.88229 1.61952 1.03361 1.43104 1.19566 1.22412 0.96220 0.94196 0.99408 1.22447 0.90416 0.97466 1.02343 1.22719 0.98266 0.91470 0.96092 0.93499 0.94917 0.92458 0.95082 0.92034 0.92995 0.95141 0.91552 0.90681 0.91209 0.95163 0.90476 0.90276 0.95638 0.91065 0.95638 0.91992 0.90186 0.95222 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.80 71.98 0.71 -4.46 16 2 C -0.11 -5.11 5.14 30.59 0.16 -4.95 16 3 C 0.21 10.67 1.81 44.17 0.08 10.75 16 4 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 5 C -0.54 -29.56 6.34 25.60 0.16 -29.40 16 6 H 0.05 2.82 6.03 -2.91 -0.02 2.81 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.52 11.29 21.45 0.24 -52.27 16 9 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 N -0.51 -21.99 4.76 -862.29 -4.10 -26.09 16 14 C 0.04 1.46 5.29 86.65 0.46 1.92 16 15 C -0.09 -2.77 6.48 31.80 0.21 -2.56 16 16 C -0.08 -2.63 2.95 -9.93 -0.03 -2.66 16 17 H 0.07 2.08 6.24 -2.39 -0.01 2.07 16 18 C 0.08 2.01 4.05 86.31 0.35 2.36 16 19 N -0.56 -12.70 4.88 -948.83 -4.63 -17.33 16 20 C 0.03 0.46 9.57 127.69 1.22 1.68 16 21 C 0.02 0.44 9.41 127.69 1.20 1.64 16 22 C 0.04 1.70 6.00 86.43 0.52 2.22 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 2.22 7.75 -2.38 -0.02 2.20 16 26 H 0.03 1.47 6.76 -2.39 -0.02 1.45 16 27 H 0.06 3.37 5.95 -2.38 -0.01 3.36 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.03 1.35 6.07 -2.39 -0.01 1.33 16 30 H 0.07 2.52 7.55 -2.38 -0.02 2.51 16 31 H 0.07 2.23 7.76 -2.39 -0.02 2.21 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.03 0.78 8.12 -2.38 -0.02 0.76 16 34 H 0.08 2.02 7.92 -2.39 -0.02 2.00 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.07 1.22 8.12 -2.38 -0.02 1.20 16 38 H 0.03 0.50 8.14 -2.38 -0.02 0.49 16 39 H 0.06 1.41 6.19 -2.39 -0.01 1.40 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.03 1.33 6.28 -2.39 -0.01 1.31 16 42 H 0.06 2.36 7.68 -2.38 -0.02 2.34 16 Total: -1.00 -58.70 315.79 -0.03 -58.73 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.96 Total: 13.08 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 5.48 Total: -21.92 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -8.49 Total: -95.70 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -58.70 -0.03 -58.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688599830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.555 kcal (2) G-P(sol) polarization free energy of solvation -58.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds