Wall clock time and date at job start Mon Mar 30 2020 03:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46732 * 2 1 4 4 N 1.46499 * 109.47199 * 182.29513 * 3 2 1 5 5 C 1.36936 * 120.00219 * 264.05531 * 4 3 2 6 6 H 1.07995 * 120.00236 * 190.18554 * 5 4 3 7 7 C 1.38810 * 119.99858 * 10.18819 * 5 4 3 8 8 N 1.31628 * 120.00117 * 26.12451 * 7 5 4 9 9 Si 1.86797 * 119.99993 * 206.12996 * 7 5 4 10 10 H 1.48493 * 109.47439 * 94.98910 * 9 7 5 11 11 H 1.48503 * 109.47202 * 214.98756 * 9 7 5 12 12 H 1.48497 * 109.47279 * 334.98483 * 9 7 5 13 13 C 1.46506 * 119.99985 * 84.04748 * 4 3 2 14 14 C 1.52999 * 109.46957 * 84.19648 * 13 4 3 15 15 C 1.53116 * 109.52382 * 184.06165 * 14 13 4 16 16 C 1.53037 * 109.27745 * 182.44175 * 15 14 13 17 17 N 1.46853 * 109.52575 * 59.18107 * 16 15 14 18 18 C 1.46896 * 111.00265 * 174.15986 * 17 16 15 19 19 C 1.46848 * 111.19674 * 298.25790 * 17 16 15 20 20 C 1.53044 * 109.52310 * 61.73954 * 19 17 16 21 21 H 1.08999 * 109.47170 * 300.00278 * 1 2 3 22 22 H 1.09001 * 109.46973 * 60.00941 * 1 2 3 23 23 H 1.09003 * 109.46515 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47287 * 239.99482 * 2 1 3 25 25 H 1.09001 * 109.46973 * 119.99059 * 2 1 3 26 26 H 1.08999 * 109.47489 * 62.29073 * 3 2 1 27 27 H 1.09003 * 109.47024 * 302.28838 * 3 2 1 28 28 H 0.96998 * 119.99734 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47353 * 324.19979 * 13 4 3 30 30 H 1.08999 * 109.47087 * 204.19605 * 13 4 3 31 31 H 1.09003 * 109.57769 * 304.22822 * 14 13 4 32 32 H 1.09001 * 109.50443 * 62.50444 * 15 14 13 33 33 H 1.08993 * 109.53797 * 302.40238 * 15 14 13 34 34 H 1.09002 * 109.46904 * 299.16400 * 16 15 14 35 35 H 1.09001 * 109.46287 * 179.19498 * 16 15 14 36 36 H 1.08995 * 109.47091 * 59.99875 * 18 17 16 37 37 H 1.09006 * 109.47085 * 299.99937 * 18 17 16 38 38 H 1.08995 * 109.47167 * 180.02562 * 18 17 16 39 39 H 1.08993 * 109.46036 * 181.75331 * 19 17 16 40 40 H 1.09001 * 109.46334 * 301.72545 * 19 17 16 41 41 H 1.08995 * 109.50118 * 180.88370 * 20 19 17 42 42 H 1.09002 * 109.53275 * 60.78052 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5039 1.4430 -0.0553 5 6 4.2327 1.5503 1.0990 6 1 5.2988 1.7161 1.0512 7 6 3.6012 1.4460 2.3307 8 7 2.4810 0.7636 2.4403 9 14 4.3410 2.2743 3.8328 10 1 3.7143 3.6071 4.0221 11 1 4.0929 1.4357 5.0330 12 1 5.8039 2.4383 3.6374 13 6 4.1882 1.3286 -1.3457 14 6 4.2921 2.7113 -1.9923 15 6 4.9156 2.5796 -3.3845 16 6 5.0729 3.9713 -4.0013 17 7 5.9279 4.7968 -3.1386 18 6 6.2142 6.0934 -3.7668 19 6 5.3266 4.9765 -1.8110 20 6 5.1769 3.6148 -1.1287 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8898 25 1 1.8934 -0.5137 0.8901 26 1 1.7106 1.9444 0.9098 27 1 1.6435 1.9681 -0.8688 28 1 2.0399 0.6904 3.3011 29 1 3.6233 0.6636 -1.9988 30 1 5.1884 0.9234 -1.1918 31 1 3.2979 3.1499 -2.0783 32 1 4.2683 1.9723 -4.0172 33 1 5.8934 2.1053 -3.3026 34 1 4.0931 4.4395 -4.0964 35 1 5.5298 3.8822 -4.9869 36 1 5.2795 6.6253 -3.9444 37 1 6.7265 5.9324 -4.7154 38 1 6.8493 6.6844 -3.1070 39 1 5.9677 5.6173 -1.2058 40 1 4.3456 5.4398 -1.9162 41 1 4.7162 3.7470 -0.1498 42 1 6.1588 3.1566 -1.0101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691573898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:34 Heat of formation + Delta-G solvation = 12.242785 kcal Electronic energy + Delta-G solvation = -18495.186800 eV Core-core repulsion = 15896.329523 eV Total energy + Delta-G solvation = -2598.857277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.80044 -36.25290 -33.65455 -31.80936 -30.71594 -30.33890 -27.35144 -25.44577 -24.61647 -22.71342 -22.13869 -20.85198 -19.79505 -18.89153 -16.58725 -15.53344 -15.04168 -14.79060 -14.37129 -13.98419 -13.69749 -13.41249 -13.19559 -12.77956 -12.61050 -12.32452 -12.09497 -11.89374 -11.44336 -11.36358 -11.06562 -10.79574 -10.76074 -10.67459 -10.41304 -10.23794 -10.05078 -9.97871 -9.78167 -9.62392 -9.46190 -9.05988 -8.25893 -8.15472 -6.73730 -5.68128 -2.97897 3.43679 3.52496 3.52805 4.13988 4.57591 5.12701 5.20272 5.26453 5.38746 5.42511 5.55731 5.60046 5.73922 5.78800 5.84736 5.90232 5.98322 6.13833 6.21277 6.24555 6.28135 6.32856 6.47228 6.58136 6.64595 6.68563 6.75335 6.85559 6.98081 7.05464 7.12636 7.20335 7.29454 7.35477 7.37856 7.75952 7.84935 8.21568 8.44385 9.34097 9.97597 10.43993 11.35079 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.007640 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.885406 B = 3664.263810 C = 4630.298379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.178 3.822 4 N -0.597 5.597 5 C -0.241 4.241 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.291 1.291 11 H -0.295 1.295 12 H -0.281 1.281 13 C 0.157 3.843 14 C -0.106 4.106 15 C -0.111 4.111 16 C 0.059 3.941 17 N -0.544 5.544 18 C 0.026 3.974 19 C 0.055 3.945 20 C -0.100 4.100 21 H 0.049 0.951 22 H 0.029 0.971 23 H 0.032 0.968 24 H 0.016 0.984 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.000 1.000 28 H 0.249 0.751 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.087 0.913 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 5.750 -10.390 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.052 3.948 4 N -0.317 5.317 5 C -0.370 4.370 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.219 1.219 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.030 3.970 14 C -0.127 4.127 15 C -0.149 4.149 16 C -0.068 4.068 17 N -0.269 5.269 18 C -0.123 4.123 19 C -0.072 4.072 20 C -0.138 4.138 21 H 0.068 0.932 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.035 0.965 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.018 0.982 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.105 0.895 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.759 5.466 -10.166 11.868 hybrid contribution -0.505 0.908 0.660 1.231 sum 2.254 6.374 -9.506 11.665 Atomic orbital electron populations 1.21639 0.98845 0.99177 0.99841 1.22207 0.92484 1.00891 1.01656 1.20680 0.82139 0.94080 0.97879 1.44138 1.01679 1.84785 1.01146 1.19273 0.92360 1.41682 0.83699 0.90887 1.24675 0.97973 1.00386 0.97069 1.70128 1.20489 1.40080 1.23307 0.86462 0.78615 0.79806 0.83286 1.21889 1.22224 1.20658 1.20719 0.96284 0.92467 0.87527 1.21817 0.97917 0.99655 0.93307 1.21612 1.01198 0.95106 0.96994 1.22064 0.94409 0.94626 0.95749 1.61963 1.46648 1.14766 1.03494 1.22327 0.99560 0.90749 0.99636 1.22204 0.96634 0.99072 0.89301 1.21552 0.99992 0.92771 0.99497 0.93218 0.95189 0.94877 0.96495 0.87665 0.90252 0.98206 0.94017 0.95177 0.93472 0.92565 0.92186 0.91472 0.95466 0.91608 0.96182 0.91835 0.91687 0.91505 0.95524 0.89454 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.91 37.16 0.37 -2.30 16 2 C -0.13 -3.03 5.80 -26.73 -0.16 -3.18 16 3 C 0.18 4.23 4.90 -4.04 -0.02 4.21 16 4 N -0.60 -14.33 2.30 -173.24 -0.40 -14.73 16 5 C -0.24 -6.32 8.12 -15.06 -0.12 -6.44 16 6 H 0.07 1.91 7.94 -52.49 -0.42 1.49 16 7 C 0.00 -0.11 4.83 -17.43 -0.08 -0.19 16 8 N -0.89 -24.63 8.60 55.49 0.48 -24.15 16 9 Si 0.89 21.45 29.63 -169.99 -5.04 16.41 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.16 3.20 5.16 -4.04 -0.02 3.18 16 14 C -0.11 -1.86 2.46 -90.50 -0.22 -2.09 16 15 C -0.11 -1.63 5.38 -26.65 -0.14 -1.77 16 16 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 17 N -0.54 -7.77 4.91 -242.96 -1.19 -8.96 16 18 C 0.03 0.30 9.59 60.06 0.58 0.87 16 19 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 20 C -0.10 -1.80 4.90 -26.64 -0.13 -1.93 16 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.02 0.37 8.02 -51.93 -0.42 -0.05 16 25 H 0.11 2.76 6.05 -51.93 -0.31 2.45 16 26 H 0.08 2.11 6.03 -51.93 -0.31 1.79 16 27 H 0.00 -0.01 7.99 -51.93 -0.41 -0.42 16 28 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.03 0.60 7.99 -51.93 -0.42 0.18 16 30 H 0.05 0.98 7.99 -51.93 -0.42 0.56 16 31 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.79 8.12 -51.93 -0.42 0.36 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 1.80 6.83 -51.93 -0.35 1.45 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -26.91 319.64 -9.43 -36.34 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.10 Total: -1.71 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 0.00 Total: -8.02 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -1.11 Total: -47.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.04 Total: 16.41 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.91 -9.43 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691573898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.586 kcal (2) G-P(sol) polarization free energy of solvation -26.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds