Wall clock time and date at job start Mon Mar 30 2020 03:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46732 * 2 1 4 4 N 1.46499 * 109.47199 * 182.29513 * 3 2 1 5 5 C 1.36936 * 120.00219 * 264.05531 * 4 3 2 6 6 H 1.07995 * 120.00236 * 190.18554 * 5 4 3 7 7 C 1.38810 * 119.99858 * 10.18819 * 5 4 3 8 8 N 1.31628 * 120.00117 * 26.12451 * 7 5 4 9 9 Si 1.86797 * 119.99993 * 206.12996 * 7 5 4 10 10 H 1.48493 * 109.47439 * 94.98910 * 9 7 5 11 11 H 1.48503 * 109.47202 * 214.98756 * 9 7 5 12 12 H 1.48497 * 109.47279 * 334.98483 * 9 7 5 13 13 C 1.46506 * 119.99985 * 84.04748 * 4 3 2 14 14 C 1.52999 * 109.46957 * 84.19648 * 13 4 3 15 15 C 1.53116 * 109.52382 * 184.06165 * 14 13 4 16 16 C 1.53037 * 109.27745 * 182.44175 * 15 14 13 17 17 N 1.46853 * 109.52575 * 59.18107 * 16 15 14 18 18 C 1.46896 * 111.00265 * 174.15986 * 17 16 15 19 19 C 1.46848 * 111.19674 * 298.25790 * 17 16 15 20 20 C 1.53044 * 109.52310 * 61.73954 * 19 17 16 21 21 H 1.08999 * 109.47170 * 300.00278 * 1 2 3 22 22 H 1.09001 * 109.46973 * 60.00941 * 1 2 3 23 23 H 1.09003 * 109.46515 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47287 * 239.99482 * 2 1 3 25 25 H 1.09001 * 109.46973 * 119.99059 * 2 1 3 26 26 H 1.08999 * 109.47489 * 62.29073 * 3 2 1 27 27 H 1.09003 * 109.47024 * 302.28838 * 3 2 1 28 28 H 0.96998 * 119.99734 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47353 * 324.19979 * 13 4 3 30 30 H 1.08999 * 109.47087 * 204.19605 * 13 4 3 31 31 H 1.09003 * 109.57769 * 304.22822 * 14 13 4 32 32 H 1.09001 * 109.50443 * 62.50444 * 15 14 13 33 33 H 1.08993 * 109.53797 * 302.40238 * 15 14 13 34 34 H 1.09002 * 109.46904 * 299.16400 * 16 15 14 35 35 H 1.09001 * 109.46287 * 179.19498 * 16 15 14 36 36 H 1.08995 * 109.47091 * 59.99875 * 18 17 16 37 37 H 1.09006 * 109.47085 * 299.99937 * 18 17 16 38 38 H 1.08995 * 109.47167 * 180.02562 * 18 17 16 39 39 H 1.08993 * 109.46036 * 181.75331 * 19 17 16 40 40 H 1.09001 * 109.46334 * 301.72545 * 19 17 16 41 41 H 1.08995 * 109.50118 * 180.88370 * 20 19 17 42 42 H 1.09002 * 109.53275 * 60.78052 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5039 1.4430 -0.0553 5 6 4.2327 1.5503 1.0990 6 1 5.2988 1.7161 1.0512 7 6 3.6012 1.4460 2.3307 8 7 2.4810 0.7636 2.4403 9 14 4.3410 2.2743 3.8328 10 1 3.7143 3.6071 4.0221 11 1 4.0929 1.4357 5.0330 12 1 5.8039 2.4383 3.6374 13 6 4.1882 1.3286 -1.3457 14 6 4.2921 2.7113 -1.9923 15 6 4.9156 2.5796 -3.3845 16 6 5.0729 3.9713 -4.0013 17 7 5.9279 4.7968 -3.1386 18 6 6.2142 6.0934 -3.7668 19 6 5.3266 4.9765 -1.8110 20 6 5.1769 3.6148 -1.1287 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8898 25 1 1.8934 -0.5137 0.8901 26 1 1.7106 1.9444 0.9098 27 1 1.6435 1.9681 -0.8688 28 1 2.0399 0.6904 3.3011 29 1 3.6233 0.6636 -1.9988 30 1 5.1884 0.9234 -1.1918 31 1 3.2979 3.1499 -2.0783 32 1 4.2683 1.9723 -4.0172 33 1 5.8934 2.1053 -3.3026 34 1 4.0931 4.4395 -4.0964 35 1 5.5298 3.8822 -4.9869 36 1 5.2795 6.6253 -3.9444 37 1 6.7265 5.9324 -4.7154 38 1 6.8493 6.6844 -3.1070 39 1 5.9677 5.6173 -1.2058 40 1 4.3456 5.4398 -1.9162 41 1 4.7162 3.7470 -0.1498 42 1 6.1588 3.1566 -1.0101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691573898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:33 Heat of formation + Delta-G solvation = -2.033684 kcal Electronic energy + Delta-G solvation = -18495.805874 eV Core-core repulsion = 15896.329523 eV Total energy + Delta-G solvation = -2599.476351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08427 -37.97742 -35.11011 -33.67529 -32.39834 -31.64671 -28.74749 -27.33186 -25.99815 -24.03176 -23.64199 -22.45011 -21.44762 -20.34839 -18.55175 -16.97563 -16.67192 -15.95333 -15.77096 -15.46724 -15.42989 -14.99486 -14.81682 -14.27936 -14.08355 -13.74584 -13.41149 -13.21190 -13.02798 -12.79791 -12.71039 -12.53119 -12.30203 -12.18959 -12.04438 -11.89936 -11.88740 -11.65900 -11.43325 -11.11842 -11.07095 -10.88551 -10.26485 -9.24742 -8.68124 -7.72456 -5.02569 1.47876 1.52346 1.58153 2.58808 3.06946 3.33020 3.71350 3.98997 4.02401 4.13429 4.32090 4.44838 4.54448 4.54904 4.59845 4.66596 4.68479 4.73843 4.84394 4.86636 4.92981 4.95304 5.01777 5.02009 5.09933 5.17674 5.23145 5.24482 5.35926 5.45536 5.55644 5.60101 5.66427 5.71894 5.88410 6.17309 6.23282 6.27683 6.42951 7.30666 8.02326 8.43925 9.28208 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.007640 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.885406 B = 3664.263810 C = 4630.298379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 C 0.183 3.817 4 N -0.609 5.609 5 C -0.240 4.240 6 H 0.068 0.932 7 C -0.051 4.051 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.295 1.295 11 H -0.301 1.301 12 H -0.275 1.275 13 C 0.157 3.843 14 C -0.095 4.095 15 C -0.104 4.104 16 C 0.061 3.939 17 N -0.556 5.556 18 C 0.026 3.974 19 C 0.063 3.937 20 C -0.094 4.094 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.014 0.986 28 H 0.243 0.757 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.090 0.910 36 H 0.024 0.976 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.023 0.977 41 H 0.053 0.947 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 6.521 -12.303 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.058 3.942 4 N -0.331 5.331 5 C -0.370 4.370 6 H 0.086 0.914 7 C -0.246 4.246 8 N -0.559 5.559 9 Si 0.772 3.228 10 H -0.223 1.223 11 H -0.229 1.229 12 H -0.200 1.200 13 C 0.031 3.969 14 C -0.116 4.116 15 C -0.142 4.142 16 C -0.067 4.067 17 N -0.281 5.281 18 C -0.122 4.122 19 C -0.064 4.064 20 C -0.132 4.132 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.168 6.248 -12.109 13.989 hybrid contribution -0.590 0.659 1.199 1.490 sum 2.577 6.907 -10.909 13.167 Atomic orbital electron populations 1.21528 0.96212 1.00502 1.00320 1.22010 0.94843 0.99622 0.99982 1.20550 0.82214 0.94598 0.96858 1.44307 1.01918 1.84964 1.01868 1.19402 0.92344 1.40589 0.84653 0.91381 1.25235 0.98905 1.01343 0.99096 1.70285 1.21471 1.41025 1.23153 0.85613 0.78189 0.78434 0.80562 1.22265 1.22890 1.20031 1.20849 0.95518 0.94296 0.86239 1.21626 0.97582 0.97430 0.94987 1.21553 1.01044 0.96542 0.95108 1.22086 0.94661 0.93442 0.96481 1.61956 1.46499 1.16497 1.03106 1.22395 1.00061 0.89408 1.00352 1.22038 0.96830 0.97244 0.90337 1.21397 0.98997 0.94525 0.98319 0.94302 0.93070 0.93150 0.96104 0.91188 0.93318 0.96770 0.94741 0.94459 0.94201 0.93686 0.90637 0.91633 0.95501 0.89193 0.95746 0.90081 0.91073 0.90797 0.95882 0.92803 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 9.91 71.98 0.71 -4.09 16 2 C -0.12 -5.67 5.80 30.60 0.18 -5.50 16 3 C 0.18 8.78 4.90 86.38 0.42 9.20 16 4 N -0.61 -29.58 2.30 -702.00 -1.62 -31.20 16 5 C -0.24 -12.81 8.12 84.03 0.68 -12.13 16 6 H 0.07 3.63 7.94 -2.91 -0.02 3.61 16 7 C -0.05 -2.79 4.83 84.86 0.41 -2.38 16 8 N -0.91 -51.51 8.60 21.65 0.19 -51.33 16 9 Si 0.94 45.06 29.63 68.60 2.03 47.09 16 10 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.16 6.34 5.16 86.38 0.45 6.78 16 14 C -0.10 -3.28 2.46 -10.71 -0.03 -3.30 16 15 C -0.10 -2.83 5.38 30.65 0.16 -2.66 16 16 C 0.06 1.47 5.46 86.32 0.47 1.94 16 17 N -0.56 -14.46 4.91 -922.58 -4.53 -18.99 16 18 C 0.03 0.51 9.59 127.69 1.22 1.73 16 19 C 0.06 1.88 5.46 86.33 0.47 2.35 16 20 C -0.09 -3.36 4.90 30.65 0.15 -3.21 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.02 0.90 8.02 -2.39 -0.02 0.88 16 25 H 0.07 3.73 6.05 -2.39 -0.01 3.72 16 26 H 0.05 2.64 6.03 -2.39 -0.01 2.62 16 27 H 0.01 0.63 7.99 -2.39 -0.02 0.61 16 28 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 29 H 0.04 1.44 7.99 -2.39 -0.02 1.42 16 30 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 31 H 0.04 1.66 8.01 -2.39 -0.02 1.64 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 36 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 39 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 2.26 6.83 -2.39 -0.02 2.25 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -57.78 319.64 2.31 -55.47 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.93 Total: 10.22 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 5.31 Total: -11.26 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.96 Total: -101.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -57.78 2.31 -55.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691573898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.432 kcal (2) G-P(sol) polarization free energy of solvation -57.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds