Wall clock time and date at job start Mon Mar 30 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47468 * 2 1 4 4 H 1.09006 * 109.46942 * 57.20254 * 3 2 1 5 5 C 1.50693 * 109.47276 * 177.20372 * 3 2 1 6 6 H 1.08000 * 119.99920 * 93.96653 * 5 3 2 7 7 C 1.37876 * 119.99958 * 273.96283 * 5 3 2 8 8 N 1.31510 * 120.00180 * 174.45556 * 7 5 3 9 9 Si 1.86802 * 119.99866 * 354.46010 * 7 5 3 10 10 H 1.48505 * 109.47129 * 275.12436 * 9 7 5 11 11 H 1.48492 * 109.47325 * 35.12435 * 9 7 5 12 12 H 1.48500 * 109.47291 * 155.12712 * 9 7 5 13 13 N 1.46904 * 109.46758 * 297.20501 * 3 2 1 14 14 C 1.46843 * 111.00090 * 301.68239 * 13 3 2 15 15 C 1.53030 * 109.52539 * 174.16357 * 14 13 3 16 16 C 1.53117 * 109.27888 * 59.18127 * 15 14 13 17 17 H 1.08998 * 109.52396 * 62.25145 * 16 15 14 18 18 C 1.52997 * 109.52541 * 182.44096 * 16 15 14 19 19 C 1.53120 * 109.16281 * 302.34684 * 16 15 14 20 20 C 1.46850 * 110.99657 * 177.47482 * 13 3 2 21 21 H 1.09007 * 109.46420 * 65.82385 * 20 13 3 22 22 C 1.53001 * 109.46670 * 305.85637 * 20 13 3 23 23 N 1.46890 * 109.47306 * 176.82141 * 22 20 13 24 24 H 1.08998 * 109.47150 * 185.05938 * 1 2 3 25 25 H 1.08998 * 109.46957 * 305.06097 * 1 2 3 26 26 H 1.08997 * 109.46948 * 65.06078 * 1 2 3 27 27 H 1.09004 * 109.47033 * 239.99754 * 2 1 3 28 28 H 1.09006 * 109.46917 * 120.00193 * 2 1 3 29 29 H 0.97003 * 120.00611 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46705 * 294.18258 * 14 13 3 31 31 H 1.09003 * 109.46273 * 54.15858 * 14 13 3 32 32 H 1.08998 * 109.50985 * 179.12389 * 15 14 13 33 33 H 1.09001 * 109.50401 * 299.20286 * 15 14 13 34 34 H 1.09005 * 109.47082 * 59.99980 * 18 16 15 35 35 H 1.08999 * 109.47688 * 179.97438 * 18 16 15 36 36 H 1.09000 * 109.47283 * 299.99955 * 18 16 15 37 37 H 1.08993 * 109.50597 * 177.59059 * 19 16 15 38 38 H 1.09007 * 109.50365 * 297.67632 * 19 16 15 39 39 H 1.09000 * 109.46732 * 296.82388 * 22 20 13 40 40 H 1.09003 * 109.46982 * 56.81806 * 22 20 13 41 41 H 1.00900 * 111.00041 * 184.69360 * 23 22 20 42 42 H 1.00899 * 111.00264 * 308.64888 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6364 1.9706 0.8639 5 6 3.5454 1.4430 0.0693 6 1 4.1278 1.4927 -0.8389 7 6 4.1793 1.3801 1.2921 8 7 5.4885 1.2705 1.3493 9 14 3.1782 1.4504 2.8677 10 1 2.9236 2.8680 3.2296 11 1 1.8840 0.7515 2.6635 12 1 3.9313 0.7877 3.9627 13 7 1.6063 2.1151 -1.2318 14 6 2.0994 1.4068 -2.4199 15 6 1.5106 2.0478 -3.6786 16 6 1.9201 3.5221 -3.7339 17 1 3.0055 3.5965 -3.8011 18 6 1.2844 4.1838 -4.9582 19 6 1.4367 4.2261 -2.4630 20 6 2.0276 3.5219 -1.2395 21 1 3.1156 3.5750 -1.2801 22 6 1.5312 4.2097 0.0339 23 7 2.0167 5.5958 0.0628 24 1 -0.3633 -1.0236 0.0906 25 1 -0.3633 0.5903 0.8412 26 1 -0.3633 0.4333 -0.9318 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9345 1.2259 2.2096 30 1 3.1870 1.4697 -2.4550 31 1 1.7976 0.3605 -2.3702 32 1 1.8889 1.5317 -4.5609 33 1 0.4236 1.9722 -3.6510 34 1 0.1990 4.1110 -4.8880 35 1 1.5760 5.2333 -4.9966 36 1 1.6246 3.6785 -5.8621 37 1 1.7624 5.2662 -2.4768 38 1 0.3484 4.1860 -2.4163 39 1 0.4412 4.2061 0.0474 40 1 1.9071 3.6747 0.9060 41 1 1.7669 6.0484 0.9293 42 1 3.0133 5.6331 -0.0904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692300847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:32 Heat of formation + Delta-G solvation = -15.491819 kcal Electronic energy + Delta-G solvation = -19180.861526 eV Core-core repulsion = 16580.801587 eV Total energy + Delta-G solvation = -2600.059939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07655 -35.37272 -34.32017 -32.22846 -31.41443 -29.71845 -28.03693 -26.00565 -24.51520 -22.74152 -22.19560 -20.28539 -19.43925 -18.70888 -16.79900 -15.90628 -14.89933 -14.61542 -14.22148 -14.09800 -13.84880 -13.58076 -12.97190 -12.84948 -12.76623 -12.18173 -12.14792 -11.91491 -11.55362 -11.47002 -11.31183 -11.15132 -10.91069 -10.70763 -10.29991 -10.25146 -10.01976 -9.93079 -9.77991 -9.63234 -9.35457 -9.21518 -8.60981 -8.12232 -7.07108 -6.16190 -4.15519 3.17948 3.29300 3.32531 4.32963 4.75725 5.14273 5.18685 5.23648 5.33945 5.45054 5.76882 5.79009 5.92824 5.99756 6.03138 6.08187 6.10964 6.14421 6.21792 6.27847 6.30832 6.44495 6.49402 6.56663 6.61618 6.65098 6.71124 6.76105 6.81397 6.86374 7.01147 7.08558 7.21839 7.27445 7.54735 7.58751 7.83102 8.18232 8.26565 8.44080 8.89429 9.48797 10.96802 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.009693 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.875164 B = 2887.906646 C = 3260.624936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.176 3.824 4 H 0.042 0.958 5 C -0.539 4.539 6 H 0.075 0.925 7 C 0.077 3.923 8 N -0.897 5.897 9 Si 0.866 3.134 10 H -0.279 1.279 11 H -0.258 1.258 12 H -0.289 1.289 13 N -0.523 5.523 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.096 4.096 17 H 0.062 0.938 18 C -0.142 4.142 19 C -0.094 4.094 20 C 0.099 3.901 21 H 0.048 0.952 22 C 0.066 3.934 23 N -0.850 5.850 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.263 0.737 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.333 0.667 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 3.952 -5.929 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.069 3.931 4 H 0.059 0.941 5 C -0.578 4.578 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.534 5.534 9 Si 0.694 3.306 10 H -0.205 1.205 11 H -0.183 1.183 12 H -0.216 1.216 13 N -0.247 5.247 14 C -0.069 4.069 15 C -0.147 4.147 16 C -0.114 4.114 17 H 0.081 0.919 18 C -0.199 4.199 19 C -0.132 4.132 20 C -0.011 4.011 21 H 0.066 0.934 22 C -0.064 4.064 23 N -0.378 5.378 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.144 0.856 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.193 4.019 -6.448 11.927 hybrid contribution 1.217 -0.364 1.920 2.302 sum -7.977 3.655 -4.528 9.874 Atomic orbital electron populations 1.21734 0.97778 0.98960 1.01458 1.21850 0.93465 0.99185 1.00809 1.19761 0.94015 0.90542 0.88804 0.94052 1.21602 0.90530 1.51199 0.94425 0.90730 1.24980 0.94567 0.94260 0.98808 1.69925 1.08179 1.49871 1.25456 0.87066 0.81305 0.78538 0.83733 1.20515 1.18254 1.21554 1.62326 1.58734 1.00893 1.02792 1.21939 0.97919 0.97631 0.89452 1.21665 1.00835 0.94944 0.97296 1.21197 0.99797 0.95448 0.94974 0.91935 1.21792 1.00548 1.00010 0.97546 1.21568 1.00287 0.98481 0.92814 1.21275 0.97954 0.88641 0.93199 0.93376 1.21852 0.99457 0.87427 0.97686 1.58815 1.20156 1.17790 1.41049 0.95027 0.94123 0.92365 0.92713 0.93100 0.92736 0.94333 0.91257 0.92868 0.92008 0.93026 0.93181 0.93384 0.91587 0.92340 0.91608 0.94434 0.85592 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.72 37.16 0.36 -2.18 16 2 C -0.11 -2.41 4.80 -26.73 -0.13 -2.54 16 3 C 0.18 3.95 0.90 -68.87 -0.06 3.88 16 4 H 0.04 0.97 3.69 -51.93 -0.19 0.78 16 5 C -0.54 -14.22 7.37 -34.44 -0.25 -14.47 16 6 H 0.07 2.19 6.43 -52.49 -0.34 1.85 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.87 20.93 25.97 -169.99 -4.41 16.51 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.26 -5.99 6.20 56.52 0.35 -5.64 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.52 -10.35 3.95 -220.14 -0.87 -11.22 16 14 C 0.06 1.11 4.80 -3.84 -0.02 1.09 16 15 C -0.11 -1.70 5.38 -26.66 -0.14 -1.84 16 16 C -0.10 -1.44 2.79 -90.50 -0.25 -1.69 16 17 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.14 -1.76 9.20 37.16 0.34 -1.42 16 19 C -0.09 -1.52 4.52 -26.65 -0.12 -1.64 16 20 C 0.10 1.87 1.65 -67.72 -0.11 1.76 16 21 H 0.05 1.07 7.36 -51.92 -0.38 0.69 16 22 C 0.07 1.22 5.90 -3.83 -0.02 1.20 16 23 N -0.85 -13.42 9.04 -10.37 -0.09 -13.52 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 27 H 0.05 1.13 6.10 -51.93 -0.32 0.82 16 28 H 0.05 1.13 6.84 -51.93 -0.36 0.78 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.04 0.83 6.47 -51.93 -0.34 0.49 16 31 H 0.07 1.29 5.90 -51.93 -0.31 0.99 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.06 7.72 -51.93 -0.40 0.65 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.79 5.78 -51.93 -0.30 0.49 16 41 H 0.33 4.65 9.08 -39.29 -0.36 4.29 16 42 H 0.34 5.40 8.93 -39.29 -0.35 5.05 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -27.73 307.69 -7.93 -35.66 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.46 Total: 9.60 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.51 Total: -15.84 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.19 Total: -50.57 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.41 Total: 16.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.73 -7.93 -35.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692300847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.171 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds