Wall clock time and date at job start Mon Mar 30 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47468 * 2 1 4 4 H 1.09006 * 109.46942 * 57.20254 * 3 2 1 5 5 C 1.50693 * 109.47276 * 177.20372 * 3 2 1 6 6 H 1.08000 * 119.99920 * 93.96653 * 5 3 2 7 7 C 1.37876 * 119.99958 * 273.96283 * 5 3 2 8 8 N 1.31510 * 120.00180 * 174.45556 * 7 5 3 9 9 Si 1.86802 * 119.99866 * 354.46010 * 7 5 3 10 10 H 1.48505 * 109.47129 * 275.12436 * 9 7 5 11 11 H 1.48492 * 109.47325 * 35.12435 * 9 7 5 12 12 H 1.48500 * 109.47291 * 155.12712 * 9 7 5 13 13 N 1.46904 * 109.46758 * 297.20501 * 3 2 1 14 14 C 1.46843 * 111.00090 * 301.68239 * 13 3 2 15 15 C 1.53030 * 109.52539 * 174.16357 * 14 13 3 16 16 C 1.53117 * 109.27888 * 59.18127 * 15 14 13 17 17 H 1.08998 * 109.52396 * 62.25145 * 16 15 14 18 18 C 1.52997 * 109.52541 * 182.44096 * 16 15 14 19 19 C 1.53120 * 109.16281 * 302.34684 * 16 15 14 20 20 C 1.46850 * 110.99657 * 177.47482 * 13 3 2 21 21 H 1.09007 * 109.46420 * 65.82385 * 20 13 3 22 22 C 1.53001 * 109.46670 * 305.85637 * 20 13 3 23 23 N 1.46890 * 109.47306 * 176.82141 * 22 20 13 24 24 H 1.08998 * 109.47150 * 185.05938 * 1 2 3 25 25 H 1.08998 * 109.46957 * 305.06097 * 1 2 3 26 26 H 1.08997 * 109.46948 * 65.06078 * 1 2 3 27 27 H 1.09004 * 109.47033 * 239.99754 * 2 1 3 28 28 H 1.09006 * 109.46917 * 120.00193 * 2 1 3 29 29 H 0.97003 * 120.00611 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46705 * 294.18258 * 14 13 3 31 31 H 1.09003 * 109.46273 * 54.15858 * 14 13 3 32 32 H 1.08998 * 109.50985 * 179.12389 * 15 14 13 33 33 H 1.09001 * 109.50401 * 299.20286 * 15 14 13 34 34 H 1.09005 * 109.47082 * 59.99980 * 18 16 15 35 35 H 1.08999 * 109.47688 * 179.97438 * 18 16 15 36 36 H 1.09000 * 109.47283 * 299.99955 * 18 16 15 37 37 H 1.08993 * 109.50597 * 177.59059 * 19 16 15 38 38 H 1.09007 * 109.50365 * 297.67632 * 19 16 15 39 39 H 1.09000 * 109.46732 * 296.82388 * 22 20 13 40 40 H 1.09003 * 109.46982 * 56.81806 * 22 20 13 41 41 H 1.00900 * 111.00041 * 184.69360 * 23 22 20 42 42 H 1.00899 * 111.00264 * 308.64888 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6364 1.9706 0.8639 5 6 3.5454 1.4430 0.0693 6 1 4.1278 1.4927 -0.8389 7 6 4.1793 1.3801 1.2921 8 7 5.4885 1.2705 1.3493 9 14 3.1782 1.4504 2.8677 10 1 2.9236 2.8680 3.2296 11 1 1.8840 0.7515 2.6635 12 1 3.9313 0.7877 3.9627 13 7 1.6063 2.1151 -1.2318 14 6 2.0994 1.4068 -2.4199 15 6 1.5106 2.0478 -3.6786 16 6 1.9201 3.5221 -3.7339 17 1 3.0055 3.5965 -3.8011 18 6 1.2844 4.1838 -4.9582 19 6 1.4367 4.2261 -2.4630 20 6 2.0276 3.5219 -1.2395 21 1 3.1156 3.5750 -1.2801 22 6 1.5312 4.2097 0.0339 23 7 2.0167 5.5958 0.0628 24 1 -0.3633 -1.0236 0.0906 25 1 -0.3633 0.5903 0.8412 26 1 -0.3633 0.4333 -0.9318 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9345 1.2259 2.2096 30 1 3.1870 1.4697 -2.4550 31 1 1.7976 0.3605 -2.3702 32 1 1.8889 1.5317 -4.5609 33 1 0.4236 1.9722 -3.6510 34 1 0.1990 4.1110 -4.8880 35 1 1.5760 5.2333 -4.9966 36 1 1.6246 3.6785 -5.8621 37 1 1.7624 5.2662 -2.4768 38 1 0.3484 4.1860 -2.4163 39 1 0.4412 4.2061 0.0474 40 1 1.9071 3.6747 0.9060 41 1 1.7669 6.0484 0.9293 42 1 3.0133 5.6331 -0.0904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692300847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:31 Heat of formation + Delta-G solvation = -35.052344 kcal Electronic energy + Delta-G solvation = -19181.709734 eV Core-core repulsion = 16580.801587 eV Total energy + Delta-G solvation = -2600.908147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62421 -36.91530 -35.73865 -34.28028 -32.92101 -31.14009 -29.62738 -27.60770 -25.92615 -24.51047 -23.64733 -21.80748 -20.81372 -20.47749 -18.75930 -17.52196 -16.47753 -16.09517 -16.00341 -15.57170 -15.23151 -15.18738 -14.66921 -14.32428 -14.16663 -13.84367 -13.70063 -13.32602 -13.00183 -12.98267 -12.77807 -12.65288 -12.44838 -12.29867 -11.91104 -11.80718 -11.61618 -11.58520 -11.43335 -11.25781 -10.89154 -10.85096 -10.65010 -9.54062 -8.83503 -8.32809 -6.34761 1.24123 1.29370 1.39024 2.28157 3.01000 3.24970 3.82422 3.94081 4.02160 4.12987 4.28283 4.40294 4.45657 4.54174 4.63069 4.68178 4.75881 4.80552 4.86525 4.89524 4.97666 5.03940 5.04861 5.14829 5.16948 5.25626 5.26837 5.34606 5.40951 5.44256 5.44894 5.52382 5.57081 5.68267 5.71759 6.12847 6.24755 6.45229 6.53484 6.65012 6.75221 7.33212 8.83903 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.009693 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.875164 B = 2887.906646 C = 3260.624936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C 0.180 3.820 4 H 0.040 0.960 5 C -0.526 4.526 6 H 0.030 0.970 7 C 0.020 3.980 8 N -0.947 5.947 9 Si 0.925 3.075 10 H -0.271 1.271 11 H -0.239 1.239 12 H -0.292 1.292 13 N -0.511 5.511 14 C 0.060 3.940 15 C -0.101 4.101 16 C -0.096 4.096 17 H 0.042 0.958 18 C -0.133 4.133 19 C -0.083 4.083 20 C 0.099 3.901 21 H 0.006 0.994 22 C 0.073 3.927 23 N -0.839 5.839 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.262 0.738 30 H -0.001 1.001 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.007 0.993 41 H 0.347 0.653 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 4.522 -6.502 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C 0.072 3.928 4 H 0.058 0.942 5 C -0.565 4.565 6 H 0.048 0.952 7 C -0.178 4.178 8 N -0.588 5.588 9 Si 0.749 3.251 10 H -0.196 1.196 11 H -0.162 1.162 12 H -0.218 1.218 13 N -0.235 5.235 14 C -0.069 4.069 15 C -0.138 4.138 16 C -0.115 4.115 17 H 0.061 0.939 18 C -0.191 4.191 19 C -0.120 4.120 20 C -0.010 4.010 21 H 0.024 0.976 22 C -0.058 4.058 23 N -0.369 5.369 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.018 0.982 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.159 0.841 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.274 4.602 -7.035 14.877 hybrid contribution 2.244 -0.530 2.012 3.060 sum -10.030 4.072 -5.022 11.933 Atomic orbital electron populations 1.21622 0.94626 1.00656 1.01946 1.21776 0.96213 0.97462 0.99976 1.19678 0.91009 0.91993 0.90156 0.94223 1.21800 0.92751 1.49371 0.92606 0.95155 1.25753 0.95380 0.94348 1.02275 1.70077 1.10151 1.52399 1.26158 0.86112 0.80481 0.79052 0.79432 1.19615 1.16175 1.21823 1.62389 1.57775 1.01221 1.02113 1.21980 0.95770 0.98230 0.90881 1.21617 1.01402 0.95022 0.95784 1.21195 0.98919 0.95433 0.95954 0.93897 1.21709 1.00926 1.00198 0.96227 1.21479 1.00474 0.98334 0.91757 1.21322 0.95637 0.88678 0.95409 0.97633 1.21735 0.99962 0.88217 0.95874 1.58789 1.20005 1.16149 1.41928 0.92701 0.93935 0.91590 0.93065 0.94593 0.92873 0.98231 0.91124 0.91143 0.90505 0.91889 0.92481 0.92183 0.91149 0.91324 0.90321 0.97449 0.84065 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.72 71.98 0.70 -3.61 16 2 C -0.12 -4.76 4.80 30.59 0.15 -4.61 16 3 C 0.18 8.07 0.90 44.17 0.04 8.11 16 4 H 0.04 1.83 3.69 -2.38 -0.01 1.82 16 5 C -0.53 -28.97 7.37 25.60 0.19 -28.78 16 6 H 0.03 1.91 6.43 -2.91 -0.02 1.89 16 7 C 0.02 1.15 5.47 84.66 0.46 1.61 16 8 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 9 Si 0.92 43.65 25.97 68.60 1.78 45.44 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.24 -10.41 6.20 99.48 0.62 -9.80 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 13 N -0.51 -20.05 3.95 -850.39 -3.36 -23.41 16 14 C 0.06 2.25 4.80 86.32 0.41 2.67 16 15 C -0.10 -2.93 5.38 30.64 0.16 -2.76 16 16 C -0.10 -2.75 2.79 -10.72 -0.03 -2.78 16 17 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 18 C -0.13 -2.89 9.20 71.98 0.66 -2.22 16 19 C -0.08 -2.55 4.52 30.65 0.14 -2.41 16 20 C 0.10 3.76 1.65 44.94 0.07 3.84 16 21 H 0.01 0.26 7.36 -2.38 -0.02 0.24 16 22 C 0.07 2.63 5.90 86.31 0.51 3.14 16 23 N -0.84 -25.56 9.04 -186.73 -1.69 -27.25 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 2.06 7.84 -2.39 -0.02 2.04 16 27 H 0.05 2.11 6.10 -2.38 -0.01 2.09 16 28 H 0.04 1.56 6.84 -2.38 -0.02 1.54 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.00 -0.03 6.47 -2.39 -0.02 -0.04 16 31 H 0.07 2.62 5.90 -2.39 -0.01 2.60 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 2.12 7.72 -2.39 -0.02 2.10 16 38 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.01 0.31 5.78 -2.39 -0.01 0.29 16 41 H 0.35 9.07 9.08 -89.69 -0.81 8.25 16 42 H 0.34 10.71 8.93 -89.69 -0.80 9.91 16 Total: -1.00 -62.23 307.69 -0.20 -62.43 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.71 Total: 29.08 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.47 Total: -27.81 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.75 Total: -109.14 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.78 Total: 45.44 kcal Total: -62.23 -0.20 -62.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692300847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.379 kcal (2) G-P(sol) polarization free energy of solvation -62.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds