Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 H 1.08998 * 109.47006 * 54.69006 * 3 2 1 5 5 C 1.50701 * 109.46639 * 174.68395 * 3 2 1 6 6 H 1.08001 * 120.00232 * 114.61976 * 5 3 2 7 7 C 1.37882 * 119.99795 * 294.61060 * 5 3 2 8 8 N 1.31505 * 120.00442 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99598 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47199 * 90.00379 * 9 7 5 11 11 H 1.48498 * 109.47171 * 210.00023 * 9 7 5 12 12 H 1.48501 * 109.47550 * 330.00087 * 9 7 5 13 13 N 1.46896 * 109.47125 * 294.68161 * 3 2 1 14 14 C 1.46903 * 110.99935 * 87.00116 * 13 3 2 15 15 C 1.53000 * 109.46947 * 71.87001 * 14 13 3 16 16 C 1.46894 * 111.00092 * 323.04520 * 13 3 2 17 17 C 1.53004 * 109.47105 * 198.47426 * 16 13 3 18 18 C 1.53508 * 114.17102 * 174.99978 * 17 16 13 19 19 N 1.47483 * 87.93101 * 139.86081 * 18 17 16 20 20 C 1.46907 * 110.99913 * 221.29743 * 19 18 17 21 21 C 1.47474 * 87.83711 * 332.98877 * 19 18 17 22 22 H 1.08996 * 109.47536 * 311.80258 * 1 2 3 23 23 H 1.09007 * 109.46916 * 71.79707 * 1 2 3 24 24 H 1.08999 * 109.47437 * 191.79105 * 1 2 3 25 25 H 1.08999 * 109.47140 * 239.99908 * 2 1 3 26 26 H 1.09001 * 109.46732 * 120.00161 * 2 1 3 27 27 H 0.96997 * 120.00292 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47056 * 191.87150 * 14 13 3 29 29 H 1.08998 * 109.46681 * 311.87410 * 14 13 3 30 30 H 1.09002 * 109.47440 * 54.35584 * 15 14 13 31 31 H 1.09001 * 109.46692 * 174.35382 * 15 14 13 32 32 H 1.08994 * 109.47703 * 294.35420 * 15 14 13 33 33 H 1.09001 * 109.47121 * 78.47426 * 16 13 3 34 34 H 1.08994 * 109.47398 * 318.47307 * 16 13 3 35 35 H 1.08998 * 113.25836 * 42.05025 * 17 16 13 36 36 H 1.09002 * 113.47764 * 25.09791 * 18 17 16 37 37 H 1.09002 * 113.53233 * 254.63753 * 18 17 16 38 38 H 1.08996 * 109.47349 * 59.99800 * 20 19 18 39 39 H 1.09002 * 109.46597 * 299.99799 * 20 19 18 40 40 H 1.09001 * 109.47043 * 180.02562 * 20 19 18 41 41 H 1.08995 * 113.47814 * 141.77282 * 21 19 18 42 42 H 1.09000 * 113.47883 * 272.24819 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6011 1.9830 0.8386 5 6 3.5412 1.4444 0.1316 6 1 4.1540 1.8083 -0.6798 7 6 4.1324 0.9818 1.2882 8 7 3.3864 0.5384 2.2762 9 14 5.9933 0.9849 1.4516 10 1 6.4367 2.2759 2.0365 11 1 6.4143 -0.1303 2.3372 12 1 6.6083 0.8115 0.1111 13 7 1.6580 2.0969 -1.2584 14 6 0.3158 2.6858 -1.1592 15 6 0.3659 3.9202 -0.2567 16 6 1.7391 1.1585 -2.3856 17 6 1.7925 1.9420 -3.6987 18 6 2.0008 1.0686 -4.9438 19 7 1.0270 1.9272 -5.6434 20 6 0.1226 1.1253 -6.4784 21 6 0.4197 2.2128 -4.3302 22 1 -0.3634 0.6850 0.7660 23 1 -0.3633 0.3210 -0.9763 24 1 -0.3634 -1.0059 0.2100 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8023 0.2126 3.0896 28 1 -0.0282 2.9754 -2.1521 29 1 -0.3717 1.9537 -0.7356 30 1 1.1263 4.6089 -0.6249 31 1 -0.6056 4.4144 -0.2629 32 1 0.6127 3.6168 0.7607 33 1 0.8617 0.5117 -2.3838 34 1 2.6387 0.5507 -2.2884 35 1 2.4427 2.8156 -3.6525 36 1 1.6603 0.0411 -4.8154 37 1 3.0084 1.1303 -5.3551 38 1 -0.4214 0.4195 -5.8507 39 1 0.7033 0.5783 -7.2212 40 1 -0.5849 1.7831 -6.9832 41 1 0.0875 3.2451 -4.2207 42 1 -0.3427 1.4907 -4.0380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692700929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = 42.939525 kcal Electronic energy + Delta-G solvation = -18673.252375 eV Core-core repulsion = 16075.726209 eV Total energy + Delta-G solvation = -2597.526166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08353 -37.64527 -32.98396 -31.40848 -31.15458 -29.22904 -27.20542 -25.83355 -25.13862 -23.15209 -22.19048 -20.81506 -19.38711 -18.78951 -16.48913 -15.70423 -15.61320 -14.96654 -14.55422 -14.20186 -13.77203 -13.67422 -13.22888 -12.91726 -12.57506 -12.51045 -11.97554 -11.54719 -11.46920 -11.32161 -11.04971 -10.92302 -10.89879 -10.78447 -10.55749 -10.49482 -10.24855 -10.13711 -9.93891 -9.69410 -9.40811 -8.88726 -8.78814 -8.29387 -6.99536 -5.96425 -3.98033 3.34517 3.41027 3.44792 4.18014 4.45479 4.66033 4.88675 5.10383 5.22945 5.35440 5.41311 5.54663 5.60954 5.76766 5.78717 5.84471 5.86813 5.95860 5.99107 6.09784 6.11742 6.17717 6.26600 6.32836 6.40773 6.48561 6.55789 6.67018 6.75341 6.79716 6.95446 7.00676 7.15510 7.26577 7.49172 7.67224 7.92474 8.28218 8.44508 8.66619 9.09778 9.66535 11.11390 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.007104 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.801898 B = 3940.288682 C = 4381.514554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.215 3.785 4 H 0.044 0.956 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.525 5.525 14 C 0.032 3.968 15 C -0.142 4.142 16 C 0.073 3.927 17 C -0.102 4.102 18 C -0.001 4.001 19 N -0.481 5.481 20 C -0.011 4.011 21 C 0.000 4.000 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.259 0.741 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 0.483 -10.359 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.061 0.939 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.249 5.249 14 C -0.096 4.096 15 C -0.200 4.200 16 C -0.056 4.056 17 C -0.121 4.121 18 C -0.131 4.131 19 N -0.202 5.202 20 C -0.161 4.161 21 C -0.129 4.129 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.216 1.328 -10.737 12.477 hybrid contribution -0.019 -1.497 0.747 1.673 sum -6.235 -0.170 -9.990 11.777 Atomic orbital electron populations 1.22118 0.99579 0.99464 0.99691 1.22256 0.91657 1.02452 1.02377 1.19400 0.95508 0.88414 0.85847 0.93866 1.21153 0.91058 1.40094 1.00709 0.92051 1.24931 0.97919 0.95686 0.95859 1.69912 1.34714 1.43346 1.05682 0.86583 0.85997 0.77437 0.77871 1.20809 1.21544 1.19978 1.62299 1.23080 1.34152 1.05364 1.22390 0.91910 0.96540 0.98738 1.21731 0.99852 0.97848 1.00554 1.21965 1.00637 0.93558 0.89443 1.22836 0.96258 0.99685 0.93303 1.23878 0.98327 0.96170 0.94682 1.68867 1.10522 1.30418 1.10442 1.22869 0.97280 0.97294 0.98632 1.24042 0.97417 1.01919 0.89521 0.93459 0.94077 0.94947 0.94150 0.89476 0.93147 0.92576 0.94266 0.92376 0.94051 0.92443 0.95687 0.90021 0.87474 0.91661 0.89920 0.94817 0.91664 0.91471 0.90084 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.16 37.16 0.30 -2.60 16 2 C -0.15 -3.35 4.77 -26.73 -0.13 -3.48 16 3 C 0.21 5.13 1.63 -68.87 -0.11 5.02 16 4 H 0.04 1.15 6.21 -51.93 -0.32 0.83 16 5 C -0.49 -13.16 8.31 -34.44 -0.29 -13.44 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -25.25 11.71 55.43 0.65 -24.60 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.53 -10.64 4.22 -228.05 -0.96 -11.60 16 14 C 0.03 0.57 5.11 -3.82 -0.02 0.55 16 15 C -0.14 -2.46 9.89 37.16 0.37 -2.09 16 16 C 0.07 1.31 3.32 -3.83 -0.01 1.30 16 17 C -0.10 -1.57 3.95 -90.09 -0.36 -1.92 16 18 C 0.00 -0.02 7.30 -7.55 -0.06 -0.07 16 19 N -0.48 -6.54 6.73 -252.98 -1.70 -8.24 16 20 C -0.01 -0.13 9.69 60.07 0.58 0.45 16 21 C 0.00 0.00 5.56 -7.55 -0.04 -0.05 16 22 H 0.05 0.92 7.62 -51.93 -0.40 0.53 16 23 H 0.04 0.72 4.77 -51.93 -0.25 0.47 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.89 5.96 -51.93 -0.31 0.58 16 26 H 0.09 2.25 6.41 -51.93 -0.33 1.92 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.06 0.89 5.34 -51.93 -0.28 0.61 16 29 H 0.04 0.70 4.17 -51.93 -0.22 0.49 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.10 6.72 -51.93 -0.35 0.76 16 33 H 0.03 0.44 5.45 -51.93 -0.28 0.16 16 34 H 0.08 1.64 6.82 -51.93 -0.35 1.28 16 35 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.36 7.52 -51.93 -0.39 -0.03 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 42 H 0.06 0.85 7.29 -51.93 -0.38 0.47 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -27.26 309.47 -9.40 -36.66 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.17 Total: 1.74 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 0.15 Total: -14.89 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -2.02 Total: -44.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.26 -9.40 -36.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692700929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.596 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds