Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 H 1.08998 * 109.47006 * 54.69006 * 3 2 1 5 5 C 1.50701 * 109.46639 * 174.68395 * 3 2 1 6 6 H 1.08001 * 120.00232 * 114.61976 * 5 3 2 7 7 C 1.37882 * 119.99795 * 294.61060 * 5 3 2 8 8 N 1.31505 * 120.00442 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99598 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47199 * 90.00379 * 9 7 5 11 11 H 1.48498 * 109.47171 * 210.00023 * 9 7 5 12 12 H 1.48501 * 109.47550 * 330.00087 * 9 7 5 13 13 N 1.46896 * 109.47125 * 294.68161 * 3 2 1 14 14 C 1.46903 * 110.99935 * 87.00116 * 13 3 2 15 15 C 1.53000 * 109.46947 * 71.87001 * 14 13 3 16 16 C 1.46894 * 111.00092 * 323.04520 * 13 3 2 17 17 C 1.53004 * 109.47105 * 198.47426 * 16 13 3 18 18 C 1.53508 * 114.17102 * 174.99978 * 17 16 13 19 19 N 1.47483 * 87.93101 * 139.86081 * 18 17 16 20 20 C 1.46907 * 110.99913 * 221.29743 * 19 18 17 21 21 C 1.47474 * 87.83711 * 332.98877 * 19 18 17 22 22 H 1.08996 * 109.47536 * 311.80258 * 1 2 3 23 23 H 1.09007 * 109.46916 * 71.79707 * 1 2 3 24 24 H 1.08999 * 109.47437 * 191.79105 * 1 2 3 25 25 H 1.08999 * 109.47140 * 239.99908 * 2 1 3 26 26 H 1.09001 * 109.46732 * 120.00161 * 2 1 3 27 27 H 0.96997 * 120.00292 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47056 * 191.87150 * 14 13 3 29 29 H 1.08998 * 109.46681 * 311.87410 * 14 13 3 30 30 H 1.09002 * 109.47440 * 54.35584 * 15 14 13 31 31 H 1.09001 * 109.46692 * 174.35382 * 15 14 13 32 32 H 1.08994 * 109.47703 * 294.35420 * 15 14 13 33 33 H 1.09001 * 109.47121 * 78.47426 * 16 13 3 34 34 H 1.08994 * 109.47398 * 318.47307 * 16 13 3 35 35 H 1.08998 * 113.25836 * 42.05025 * 17 16 13 36 36 H 1.09002 * 113.47764 * 25.09791 * 18 17 16 37 37 H 1.09002 * 113.53233 * 254.63753 * 18 17 16 38 38 H 1.08996 * 109.47349 * 59.99800 * 20 19 18 39 39 H 1.09002 * 109.46597 * 299.99799 * 20 19 18 40 40 H 1.09001 * 109.47043 * 180.02562 * 20 19 18 41 41 H 1.08995 * 113.47814 * 141.77282 * 21 19 18 42 42 H 1.09000 * 113.47883 * 272.24819 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6011 1.9830 0.8386 5 6 3.5412 1.4444 0.1316 6 1 4.1540 1.8083 -0.6798 7 6 4.1324 0.9818 1.2882 8 7 3.3864 0.5384 2.2762 9 14 5.9933 0.9849 1.4516 10 1 6.4367 2.2759 2.0365 11 1 6.4143 -0.1303 2.3372 12 1 6.6083 0.8115 0.1111 13 7 1.6580 2.0969 -1.2584 14 6 0.3158 2.6858 -1.1592 15 6 0.3659 3.9202 -0.2567 16 6 1.7391 1.1585 -2.3856 17 6 1.7925 1.9420 -3.6987 18 6 2.0008 1.0686 -4.9438 19 7 1.0270 1.9272 -5.6434 20 6 0.1226 1.1253 -6.4784 21 6 0.4197 2.2128 -4.3302 22 1 -0.3634 0.6850 0.7660 23 1 -0.3633 0.3210 -0.9763 24 1 -0.3634 -1.0059 0.2100 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8023 0.2126 3.0896 28 1 -0.0282 2.9754 -2.1521 29 1 -0.3717 1.9537 -0.7356 30 1 1.1263 4.6089 -0.6249 31 1 -0.6056 4.4144 -0.2629 32 1 0.6127 3.6168 0.7607 33 1 0.8617 0.5117 -2.3838 34 1 2.6387 0.5507 -2.2884 35 1 2.4427 2.8156 -3.6525 36 1 1.6603 0.0411 -4.8154 37 1 3.0084 1.1303 -5.3551 38 1 -0.4214 0.4195 -5.8507 39 1 0.7033 0.5783 -7.2212 40 1 -0.5849 1.7831 -6.9832 41 1 0.0875 3.2451 -4.2207 42 1 -0.3427 1.4907 -4.0380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692700929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = 24.159176 kcal Electronic energy + Delta-G solvation = -18674.066752 eV Core-core repulsion = 16075.726209 eV Total energy + Delta-G solvation = -2598.340543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25748 -39.22305 -34.88863 -32.96115 -32.59759 -30.65717 -28.90604 -26.93467 -26.57088 -24.96305 -23.41113 -22.42016 -20.57576 -20.46821 -18.42737 -17.15113 -16.91825 -16.41094 -16.02018 -15.61682 -15.26798 -15.21448 -14.63118 -14.32240 -14.09161 -13.56027 -13.53744 -13.14948 -12.98543 -12.81115 -12.71363 -12.55151 -12.46632 -12.20942 -12.12695 -11.99570 -11.80105 -11.73660 -11.48797 -11.15592 -11.04141 -10.80572 -10.35678 -9.83946 -8.62103 -8.04731 -6.12881 1.42714 1.44193 1.53685 2.46679 3.13183 3.23367 3.35650 3.65528 3.99919 4.15330 4.34086 4.38016 4.43254 4.45241 4.52168 4.56649 4.58678 4.61109 4.70033 4.76041 4.83477 4.87537 4.90472 4.98548 5.04354 5.07175 5.14861 5.19387 5.28854 5.35547 5.41476 5.48871 5.54352 5.64101 5.80688 5.85407 6.13878 6.37288 6.70166 6.88713 7.02501 7.55777 9.01177 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.007104 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.801898 B = 3940.288682 C = 4381.514554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.222 3.778 4 H 0.011 0.989 5 C -0.505 4.505 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.537 5.537 14 C 0.033 3.967 15 C -0.138 4.138 16 C 0.081 3.919 17 C -0.104 4.104 18 C 0.005 3.995 19 N -0.492 5.492 20 C -0.013 4.013 21 C 0.009 3.991 22 H 0.039 0.961 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.258 0.742 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 0.451 -12.072 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.180 4.180 3 C 0.115 3.885 4 H 0.029 0.971 5 C -0.543 4.543 6 H 0.068 0.932 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.261 5.261 14 C -0.095 4.095 15 C -0.196 4.196 16 C -0.047 4.047 17 C -0.124 4.124 18 C -0.124 4.124 19 N -0.214 5.214 20 C -0.161 4.161 21 C -0.120 4.120 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.224 1.301 -12.470 14.470 hybrid contribution 0.276 -1.460 1.240 1.935 sum -6.948 -0.159 -11.230 13.206 Atomic orbital electron populations 1.21975 0.96651 1.00415 1.00628 1.22068 0.94243 1.01088 1.00634 1.19096 0.93802 0.88963 0.86642 0.97082 1.21445 0.92851 1.39689 1.00359 0.93228 1.25608 1.01775 0.95578 0.95713 1.70032 1.36137 1.44116 1.05994 0.85684 0.81442 0.77368 0.77867 1.20606 1.21176 1.19511 1.62209 1.25107 1.34409 1.04354 1.22467 0.90422 0.96447 1.00176 1.21699 1.01407 0.97788 0.98666 1.21882 0.99656 0.93391 0.89809 1.22670 0.97787 0.99311 0.92592 1.23842 0.98789 0.96341 0.93446 1.68850 1.11029 1.31054 1.10455 1.22929 0.97206 0.97445 0.98561 1.23976 0.96271 1.02406 0.89330 0.94202 0.92014 0.93335 0.93914 0.93067 0.93275 0.90084 0.94053 0.93135 0.90788 0.95286 0.94781 0.92685 0.89224 0.90718 0.89782 0.94183 0.90730 0.90454 0.89773 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.16 71.98 0.59 -4.60 16 2 C -0.14 -6.44 4.77 30.59 0.15 -6.29 16 3 C 0.22 10.86 1.63 44.17 0.07 10.93 16 4 H 0.01 0.62 6.21 -2.39 -0.01 0.61 16 5 C -0.50 -27.73 8.31 25.60 0.21 -27.52 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.62 5.30 84.66 0.45 1.07 16 8 N -0.92 -53.28 11.71 21.45 0.25 -53.03 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.54 -21.69 4.22 -875.41 -3.70 -25.39 16 14 C 0.03 1.10 5.11 86.30 0.44 1.54 16 15 C -0.14 -4.66 9.89 71.98 0.71 -3.95 16 16 C 0.08 2.86 3.32 86.31 0.29 3.14 16 17 C -0.10 -3.08 3.95 -10.45 -0.04 -3.12 16 18 C 0.01 0.13 7.30 83.57 0.61 0.74 16 19 N -0.49 -12.05 6.73 -954.30 -6.42 -18.48 16 20 C -0.01 -0.24 9.69 127.69 1.24 1.00 16 21 C 0.01 0.22 5.56 83.58 0.46 0.68 16 22 H 0.04 1.52 7.62 -2.39 -0.02 1.51 16 23 H 0.06 2.02 4.77 -2.38 -0.01 2.01 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.89 5.96 -2.39 -0.01 1.88 16 26 H 0.05 2.71 6.41 -2.39 -0.02 2.70 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.08 2.35 5.34 -2.39 -0.01 2.33 16 29 H 0.04 1.40 4.17 -2.39 -0.01 1.39 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.03 1.12 6.72 -2.39 -0.02 1.10 16 33 H 0.03 1.13 5.45 -2.39 -0.01 1.12 16 34 H 0.05 2.22 6.82 -2.39 -0.02 2.20 16 35 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.07 1.76 7.87 -2.39 -0.02 1.74 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 0.72 7.52 -2.39 -0.02 0.70 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 2.05 7.71 -2.39 -0.02 2.03 16 42 H 0.07 1.69 7.29 -2.39 -0.02 1.67 16 Total: -1.00 -59.25 309.47 -1.69 -60.94 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.98 Total: 15.95 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 5.18 Total: -26.37 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -9.87 Total: -96.90 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -59.25 -1.69 -60.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692700929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.095 kcal (2) G-P(sol) polarization free energy of solvation -59.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds