Wall clock time and date at job start Mon Mar 30 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46794 * 2 1 4 4 H 1.08997 * 109.47283 * 54.07168 * 3 2 1 5 5 C 1.50701 * 109.46808 * 294.06624 * 3 2 1 6 6 H 1.07995 * 120.00291 * 275.15918 * 5 3 2 7 7 C 1.37879 * 119.99419 * 95.16422 * 5 3 2 8 8 N 1.31510 * 120.00595 * 5.79412 * 7 5 3 9 9 Si 1.86805 * 119.99490 * 185.79635 * 7 5 3 10 10 H 1.48496 * 109.47422 * 59.99671 * 9 7 5 11 11 H 1.48500 * 109.46659 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47027 * 299.99580 * 9 7 5 13 13 N 1.46906 * 109.46914 * 174.07022 * 3 2 1 14 14 C 1.46902 * 110.99727 * 52.16087 * 13 3 2 15 15 C 1.46894 * 111.00151 * 288.20731 * 13 3 2 16 16 C 1.53006 * 109.47309 * 199.17597 * 15 13 3 17 17 C 1.53934 * 113.73102 * 271.72728 * 16 15 13 18 18 N 1.47962 * 86.17716 * 221.91581 * 17 16 15 19 19 C 1.46902 * 110.99473 * 137.58130 * 18 17 16 20 20 C 1.52998 * 109.47303 * 70.64278 * 19 18 17 21 21 C 1.47967 * 90.76222 * 24.69219 * 18 17 16 22 22 H 1.09002 * 109.47783 * 298.97221 * 1 2 3 23 23 H 1.08999 * 109.47129 * 58.97073 * 1 2 3 24 24 H 1.09001 * 109.47209 * 178.96763 * 1 2 3 25 25 H 1.08994 * 109.47436 * 239.99881 * 2 1 3 26 26 H 1.09000 * 109.47174 * 119.99318 * 2 1 3 27 27 H 0.96994 * 120.00598 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47551 * 59.99826 * 14 13 3 29 29 H 1.09001 * 109.47350 * 299.99688 * 14 13 3 30 30 H 1.09000 * 109.46769 * 179.97438 * 14 13 3 31 31 H 1.09003 * 109.46741 * 319.17172 * 15 13 3 32 32 H 1.08995 * 109.47375 * 79.17333 * 15 13 3 33 33 H 1.09008 * 112.93515 * 43.43002 * 16 15 13 34 34 H 1.09005 * 113.75925 * 336.23400 * 17 16 15 35 35 H 1.09004 * 113.76018 * 107.60207 * 17 16 15 36 36 H 1.09003 * 109.46691 * 190.64317 * 19 18 17 37 37 H 1.08995 * 109.47288 * 310.63886 * 19 18 17 38 38 H 1.09007 * 109.46902 * 59.99598 * 20 19 18 39 39 H 1.08998 * 109.47203 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.46912 * 300.00051 * 20 19 18 41 41 H 1.09000 * 113.75727 * 220.98833 * 21 18 17 42 42 H 1.08996 * 113.76174 * 89.62475 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5925 1.9861 0.8321 5 6 1.6610 2.1092 -1.2973 6 1 2.2899 1.9937 -2.1677 7 6 0.5114 2.8667 -1.3730 8 7 -0.1937 3.1021 -0.2882 9 14 -0.0445 3.5587 -3.0167 10 1 -0.2864 2.4435 -3.9670 11 1 -1.2988 4.3313 -2.8297 12 1 1.0101 4.4519 -3.5599 13 7 3.5019 1.4451 0.1431 14 6 4.1299 0.5679 -0.8540 15 6 3.8983 1.0626 1.5048 16 6 5.3336 1.5234 1.7667 17 6 6.4004 0.4960 1.3472 18 7 7.0884 0.8424 2.6105 19 6 7.5987 -0.3620 3.2793 20 6 8.7771 -0.9267 2.4836 21 6 5.8087 1.2802 3.2105 22 1 -0.3635 0.4978 0.8990 23 1 -0.3633 0.5297 -0.8806 24 1 -0.3634 -1.0275 -0.0185 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 -1.0022 3.6353 -0.3414 28 1 3.8762 0.9157 -1.8553 29 1 3.7675 -0.4515 -0.7208 30 1 5.2122 0.5887 -0.7259 31 1 3.2285 1.5340 2.2241 32 1 3.8397 -0.0207 1.6096 33 1 5.5283 2.5331 1.4050 34 1 6.0331 -0.5298 1.3141 35 1 6.9554 0.7794 0.4529 36 1 7.9293 -0.1060 4.2859 37 1 6.8071 -1.1091 3.3359 38 1 9.5687 -0.1795 2.4270 39 1 9.1559 -1.8201 2.9801 40 1 8.4464 -1.1826 1.4770 41 1 5.8910 2.1901 3.8050 42 1 5.2685 0.4838 3.7223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692717278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:32 Heat of formation + Delta-G solvation = 30.760658 kcal Electronic energy + Delta-G solvation = -18178.277314 eV Core-core repulsion = 15580.223033 eV Total energy + Delta-G solvation = -2598.054281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96991 -37.12367 -33.45896 -32.29503 -30.91975 -28.40226 -26.70203 -26.08314 -25.26257 -23.58585 -22.18509 -20.85882 -19.38683 -18.89188 -16.35862 -15.94531 -15.35467 -15.11855 -14.64713 -14.23546 -13.74190 -13.49385 -13.29228 -13.03095 -12.53312 -12.37978 -12.25769 -11.92300 -11.45948 -11.40448 -11.08038 -10.99313 -10.86905 -10.78106 -10.64883 -10.55187 -10.28949 -10.14460 -10.02972 -9.78723 -9.34454 -8.93340 -8.68432 -8.35442 -7.05310 -5.98294 -3.98603 3.34341 3.39077 3.42059 4.02603 4.43692 4.65974 4.86115 4.94116 5.09324 5.22368 5.36043 5.48713 5.50270 5.56715 5.70692 5.80328 5.83949 5.92598 5.94359 6.02874 6.11705 6.18351 6.29008 6.31702 6.39946 6.41030 6.48581 6.63071 6.68502 6.77442 6.94164 7.15333 7.17919 7.27265 7.56171 7.61760 7.88854 8.13771 8.43865 8.66857 9.07720 9.63119 11.10228 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.005199 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.353299 B = 5383.890187 C = 5506.634244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.200 3.800 4 H 0.070 0.930 5 C -0.493 4.493 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.529 5.529 14 C 0.031 3.969 15 C 0.062 3.938 16 C -0.101 4.101 17 C 0.008 3.992 18 N -0.483 5.483 19 C 0.015 3.985 20 C -0.147 4.147 21 C 0.003 3.997 22 H 0.046 0.954 23 H 0.067 0.933 24 H 0.014 0.986 25 H 0.042 0.958 26 H 0.018 0.982 27 H 0.260 0.740 28 H 0.067 0.933 29 H 0.012 0.988 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.020 0.980 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.627 -6.758 5.439 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.094 3.906 4 H 0.088 0.912 5 C -0.532 4.532 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.251 5.251 14 C -0.118 4.118 15 C -0.067 4.067 16 C -0.120 4.120 17 C -0.121 4.121 18 N -0.206 5.206 19 C -0.113 4.113 20 C -0.204 4.204 21 C -0.126 4.126 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.210 -5.747 5.427 13.716 hybrid contribution -1.285 -1.196 -0.627 1.864 sum 9.925 -6.942 4.800 13.028 Atomic orbital electron populations 1.21437 0.95942 0.97220 1.03224 1.22223 0.96854 1.01232 0.97459 1.19669 0.80745 0.90680 0.99472 0.91221 1.20913 1.06613 1.30144 0.95504 0.92679 1.24879 0.96979 0.95436 0.96125 1.69913 1.16580 1.39380 1.27005 0.86726 0.77973 0.79118 0.84568 1.20399 1.21406 1.20260 1.62527 1.12147 1.50008 1.00433 1.22305 0.97401 0.94185 0.97862 1.22067 0.94461 0.96689 0.93497 1.23015 0.94483 1.00596 0.93921 1.24039 0.95262 0.98334 0.94434 1.68554 1.22117 1.25909 1.04006 1.22579 0.97528 0.92397 0.98820 1.21713 0.98184 1.00376 1.00144 1.23981 0.90109 1.00945 0.97572 0.93448 0.91389 0.96726 0.93965 0.96335 0.92976 0.91441 0.96912 0.93610 0.91298 0.96168 0.87604 0.91821 0.89694 0.91025 0.94523 0.92000 0.92594 0.92717 0.89538 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.15 37.15 0.34 -2.36 16 2 C -0.14 -3.06 4.48 -26.73 -0.12 -3.18 16 3 C 0.20 4.85 1.92 -68.86 -0.13 4.72 16 4 H 0.07 1.91 6.88 -51.93 -0.36 1.55 16 5 C -0.49 -13.12 7.63 -34.44 -0.26 -13.38 16 6 H 0.06 1.48 6.46 -52.49 -0.34 1.14 16 7 C 0.07 1.83 4.25 -17.82 -0.08 1.75 16 8 N -0.89 -24.78 12.10 55.43 0.67 -24.11 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.53 -11.18 4.62 -236.28 -1.09 -12.27 16 14 C 0.03 0.59 8.50 60.07 0.51 1.10 16 15 C 0.06 1.11 4.31 -3.82 -0.02 1.09 16 16 C -0.10 -1.54 3.86 -89.69 -0.35 -1.88 16 17 C 0.01 0.11 4.92 -2.77 -0.01 0.09 16 18 N -0.48 -6.39 6.26 -238.30 -1.49 -7.89 16 19 C 0.02 0.17 5.54 -3.82 -0.02 0.15 16 20 C -0.15 -1.45 9.98 37.16 0.37 -1.08 16 21 C 0.00 0.04 7.54 -2.77 -0.02 0.02 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.07 1.68 6.38 -51.93 -0.33 1.35 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.93 6.69 -51.93 -0.35 0.58 16 26 H 0.02 0.38 6.99 -51.93 -0.36 0.02 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.07 1.37 6.58 -51.93 -0.34 1.03 16 29 H 0.01 0.23 6.33 -51.93 -0.33 -0.09 16 30 H 0.05 0.76 5.68 -51.93 -0.30 0.46 16 31 H 0.07 1.29 7.72 -51.93 -0.40 0.89 16 32 H 0.02 0.35 7.01 -51.93 -0.36 -0.01 16 33 H 0.11 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.06 0.87 7.53 -51.93 -0.39 0.48 16 35 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.41 7.69 -51.93 -0.40 0.01 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 0.82 7.75 -51.93 -0.40 0.41 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -27.12 316.18 -9.51 -36.63 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.55 Total: -0.23 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 0.21 Total: -12.96 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -1.91 Total: -44.26 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.12 -9.51 -36.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692717278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.387 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds