Wall clock time and date at job start Mon Mar 30 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46794 * 2 1 4 4 H 1.08997 * 109.47283 * 54.07168 * 3 2 1 5 5 C 1.50701 * 109.46808 * 294.06624 * 3 2 1 6 6 H 1.07995 * 120.00291 * 275.15918 * 5 3 2 7 7 C 1.37879 * 119.99419 * 95.16422 * 5 3 2 8 8 N 1.31510 * 120.00595 * 5.79412 * 7 5 3 9 9 Si 1.86805 * 119.99490 * 185.79635 * 7 5 3 10 10 H 1.48496 * 109.47422 * 59.99671 * 9 7 5 11 11 H 1.48500 * 109.46659 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47027 * 299.99580 * 9 7 5 13 13 N 1.46906 * 109.46914 * 174.07022 * 3 2 1 14 14 C 1.46902 * 110.99727 * 52.16087 * 13 3 2 15 15 C 1.46894 * 111.00151 * 288.20731 * 13 3 2 16 16 C 1.53006 * 109.47309 * 199.17597 * 15 13 3 17 17 C 1.53934 * 113.73102 * 271.72728 * 16 15 13 18 18 N 1.47962 * 86.17716 * 221.91581 * 17 16 15 19 19 C 1.46902 * 110.99473 * 137.58130 * 18 17 16 20 20 C 1.52998 * 109.47303 * 70.64278 * 19 18 17 21 21 C 1.47967 * 90.76222 * 24.69219 * 18 17 16 22 22 H 1.09002 * 109.47783 * 298.97221 * 1 2 3 23 23 H 1.08999 * 109.47129 * 58.97073 * 1 2 3 24 24 H 1.09001 * 109.47209 * 178.96763 * 1 2 3 25 25 H 1.08994 * 109.47436 * 239.99881 * 2 1 3 26 26 H 1.09000 * 109.47174 * 119.99318 * 2 1 3 27 27 H 0.96994 * 120.00598 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47551 * 59.99826 * 14 13 3 29 29 H 1.09001 * 109.47350 * 299.99688 * 14 13 3 30 30 H 1.09000 * 109.46769 * 179.97438 * 14 13 3 31 31 H 1.09003 * 109.46741 * 319.17172 * 15 13 3 32 32 H 1.08995 * 109.47375 * 79.17333 * 15 13 3 33 33 H 1.09008 * 112.93515 * 43.43002 * 16 15 13 34 34 H 1.09005 * 113.75925 * 336.23400 * 17 16 15 35 35 H 1.09004 * 113.76018 * 107.60207 * 17 16 15 36 36 H 1.09003 * 109.46691 * 190.64317 * 19 18 17 37 37 H 1.08995 * 109.47288 * 310.63886 * 19 18 17 38 38 H 1.09007 * 109.46902 * 59.99598 * 20 19 18 39 39 H 1.08998 * 109.47203 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.46912 * 300.00051 * 20 19 18 41 41 H 1.09000 * 113.75727 * 220.98833 * 21 18 17 42 42 H 1.08996 * 113.76174 * 89.62475 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5925 1.9861 0.8321 5 6 1.6610 2.1092 -1.2973 6 1 2.2899 1.9937 -2.1677 7 6 0.5114 2.8667 -1.3730 8 7 -0.1937 3.1021 -0.2882 9 14 -0.0445 3.5587 -3.0167 10 1 -0.2864 2.4435 -3.9670 11 1 -1.2988 4.3313 -2.8297 12 1 1.0101 4.4519 -3.5599 13 7 3.5019 1.4451 0.1431 14 6 4.1299 0.5679 -0.8540 15 6 3.8983 1.0626 1.5048 16 6 5.3336 1.5234 1.7667 17 6 6.4004 0.4960 1.3472 18 7 7.0884 0.8424 2.6105 19 6 7.5987 -0.3620 3.2793 20 6 8.7771 -0.9267 2.4836 21 6 5.8087 1.2802 3.2105 22 1 -0.3635 0.4978 0.8990 23 1 -0.3633 0.5297 -0.8806 24 1 -0.3634 -1.0275 -0.0185 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 -1.0022 3.6353 -0.3414 28 1 3.8762 0.9157 -1.8553 29 1 3.7675 -0.4515 -0.7208 30 1 5.2122 0.5887 -0.7259 31 1 3.2285 1.5340 2.2241 32 1 3.8397 -0.0207 1.6096 33 1 5.5283 2.5331 1.4050 34 1 6.0331 -0.5298 1.3141 35 1 6.9554 0.7794 0.4529 36 1 7.9293 -0.1060 4.2859 37 1 6.8071 -1.1091 3.3359 38 1 9.5687 -0.1795 2.4270 39 1 9.1559 -1.8201 2.9801 40 1 8.4464 -1.1826 1.4770 41 1 5.8910 2.1901 3.8050 42 1 5.2685 0.4838 3.7223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692717278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:32 Heat of formation + Delta-G solvation = 12.669464 kcal Electronic energy + Delta-G solvation = -18179.061807 eV Core-core repulsion = 15580.223033 eV Total energy + Delta-G solvation = -2598.838774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10397 -38.78786 -35.06711 -33.65170 -32.67486 -29.73581 -28.38173 -27.45781 -26.54654 -25.20848 -23.73430 -22.04825 -20.73157 -20.47403 -18.30626 -17.11961 -16.75610 -16.49569 -16.03692 -15.77026 -15.25746 -15.04451 -14.76814 -14.37194 -14.18915 -13.57515 -13.44099 -13.19480 -13.02325 -12.79024 -12.71241 -12.54814 -12.44698 -12.22715 -12.16335 -12.04112 -11.95150 -11.62331 -11.47045 -11.28035 -11.13941 -10.84809 -10.41469 -9.72845 -8.71493 -8.03739 -6.09596 1.44703 1.45594 1.52296 2.47448 2.99661 3.15747 3.46384 3.67769 3.98722 4.08001 4.23352 4.37731 4.38953 4.47307 4.50820 4.58497 4.60625 4.67664 4.73446 4.77672 4.79580 4.82157 4.91786 4.93957 5.02421 5.06784 5.10815 5.17952 5.23709 5.31655 5.41285 5.46244 5.48683 5.69332 5.76368 5.82090 6.15763 6.23452 6.69636 6.86176 7.01621 7.55046 9.03600 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.005199 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.353299 B = 5383.890187 C = 5506.634244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.130 4.130 3 C 0.206 3.794 4 H 0.032 0.968 5 C -0.505 4.505 6 H 0.048 0.952 7 C 0.026 3.974 8 N -0.916 5.916 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.547 5.547 14 C 0.038 3.962 15 C 0.070 3.930 16 C -0.103 4.103 17 C 0.016 3.984 18 N -0.492 5.492 19 C 0.013 3.987 20 C -0.143 4.143 21 C 0.011 3.989 22 H 0.031 0.969 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.034 0.966 27 H 0.259 0.741 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.834 -8.027 5.541 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.169 4.169 3 C 0.099 3.901 4 H 0.050 0.950 5 C -0.544 4.544 6 H 0.067 0.933 7 C -0.174 4.174 8 N -0.556 5.556 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.270 5.270 14 C -0.110 4.110 15 C -0.059 4.059 16 C -0.122 4.122 17 C -0.112 4.112 18 N -0.215 5.215 19 C -0.115 4.115 20 C -0.201 4.201 21 C -0.118 4.118 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.436 -7.026 5.527 15.315 hybrid contribution -1.606 -0.814 -0.613 1.902 sum 10.830 -7.839 4.914 14.244 Atomic orbital electron populations 1.21327 0.96125 0.98441 1.01116 1.22078 0.96593 0.99989 0.98271 1.19404 0.82622 0.91212 0.96882 0.95016 1.21180 1.06586 1.30290 0.96299 0.93334 1.25497 0.97139 0.95943 0.98789 1.70034 1.16844 1.40131 1.28550 0.85863 0.77421 0.78539 0.81282 1.19732 1.21237 1.20218 1.62368 1.10438 1.51591 1.02612 1.22257 0.98715 0.93792 0.96258 1.22029 0.95707 0.96966 0.91223 1.22898 0.93134 1.00120 0.96097 1.23960 0.94453 0.97924 0.94884 1.68549 1.21885 1.27161 1.03873 1.22661 0.97991 0.91594 0.99283 1.21696 0.97539 1.00965 0.99890 1.23956 0.90009 1.01588 0.96213 0.94995 0.94018 0.93720 0.93606 0.94704 0.93214 0.93233 0.96297 0.91093 0.92909 0.95299 0.89405 0.91227 0.89716 0.90119 0.94216 0.92364 0.90800 0.93191 0.88979 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.15 71.98 0.66 -4.32 16 2 C -0.13 -5.66 4.48 30.59 0.14 -5.52 16 3 C 0.21 10.08 1.92 44.17 0.08 10.16 16 4 H 0.03 1.79 6.88 -2.39 -0.02 1.78 16 5 C -0.50 -27.18 7.63 25.60 0.20 -26.98 16 6 H 0.05 2.63 6.46 -2.91 -0.02 2.61 16 7 C 0.03 1.40 4.25 84.66 0.36 1.76 16 8 N -0.92 -52.05 12.10 21.45 0.26 -51.79 16 9 Si 0.94 43.54 29.54 68.60 2.03 45.56 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.55 -23.06 4.62 -901.45 -4.17 -27.22 16 14 C 0.04 1.40 8.50 127.69 1.09 2.49 16 15 C 0.07 2.44 4.31 86.31 0.37 2.81 16 16 C -0.10 -3.03 3.86 -10.15 -0.04 -3.07 16 17 C 0.02 0.41 4.92 86.41 0.43 0.84 16 18 N -0.49 -11.95 6.26 -907.85 -5.69 -17.64 16 19 C 0.01 0.26 5.54 86.30 0.48 0.74 16 20 C -0.14 -2.47 9.98 71.98 0.72 -1.75 16 21 C 0.01 0.28 7.54 86.40 0.65 0.93 16 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.04 2.05 6.38 -2.39 -0.02 2.03 16 24 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.96 6.69 -2.39 -0.02 1.94 16 26 H 0.03 1.39 6.99 -2.39 -0.02 1.37 16 27 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.05 1.99 6.58 -2.39 -0.02 1.97 16 29 H 0.02 0.66 6.33 -2.39 -0.02 0.65 16 30 H 0.07 2.22 5.68 -2.39 -0.01 2.21 16 31 H 0.05 1.99 7.72 -2.39 -0.02 1.98 16 32 H 0.03 0.96 7.01 -2.39 -0.02 0.94 16 33 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 34 H 0.07 1.70 7.53 -2.38 -0.02 1.68 16 35 H 0.08 2.16 7.72 -2.39 -0.02 2.14 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.04 0.77 7.69 -2.39 -0.02 0.75 16 38 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.90 7.54 -2.39 -0.02 0.88 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.08 1.71 7.75 -2.39 -0.02 1.69 16 Total: -1.00 -57.73 316.18 -1.48 -59.21 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.96 Total: 13.80 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 5.13 Total: -21.93 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -9.59 Total: -96.65 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -57.73 -1.48 -59.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692717278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.880 kcal (2) G-P(sol) polarization free energy of solvation -57.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds