Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 H 1.09003 * 109.46839 * 176.67742 * 3 2 1 5 5 C 1.50703 * 109.46645 * 296.67641 * 3 2 1 6 6 H 1.08003 * 119.99431 * 118.77397 * 5 3 2 7 7 C 1.37871 * 119.99998 * 298.76738 * 5 3 2 8 8 N 1.31516 * 119.99836 * 167.89634 * 7 5 3 9 9 Si 1.86800 * 120.00154 * 347.89281 * 7 5 3 10 10 H 1.48502 * 109.47044 * 264.68260 * 9 7 5 11 11 H 1.48500 * 109.47263 * 24.68284 * 9 7 5 12 12 H 1.48503 * 109.47042 * 144.68749 * 9 7 5 13 13 N 1.46898 * 109.47104 * 56.67475 * 3 2 1 14 14 C 1.46903 * 110.99922 * 187.80938 * 13 3 2 15 15 C 1.46902 * 110.99881 * 63.85968 * 13 3 2 16 16 C 1.52998 * 109.46989 * 196.26762 * 15 13 3 17 17 C 1.53933 * 113.73536 * 273.76569 * 16 15 13 18 18 N 1.48197 * 86.10170 * 221.95701 * 17 16 15 19 19 C 1.46898 * 111.06774 * 137.52259 * 18 17 16 20 20 C 1.52995 * 109.47465 * 70.56769 * 19 18 17 21 21 C 1.47956 * 90.79701 * 24.60249 * 18 17 16 22 22 H 1.08997 * 109.47420 * 304.98756 * 1 2 3 23 23 H 1.09002 * 109.46684 * 64.99154 * 1 2 3 24 24 H 1.09003 * 109.47161 * 184.98707 * 1 2 3 25 25 H 1.08997 * 109.46944 * 239.99523 * 2 1 3 26 26 H 1.09005 * 109.46757 * 119.99595 * 2 1 3 27 27 H 0.97002 * 120.00194 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46607 * 60.00043 * 14 13 3 29 29 H 1.08992 * 109.47329 * 180.02562 * 14 13 3 30 30 H 1.08998 * 109.47170 * 300.00398 * 14 13 3 31 31 H 1.08996 * 109.47359 * 316.27080 * 15 13 3 32 32 H 1.09001 * 109.46948 * 76.27152 * 15 13 3 33 33 H 1.09001 * 112.94096 * 45.33617 * 16 15 13 34 34 H 1.08993 * 113.76024 * 336.23813 * 17 16 15 35 35 H 1.09007 * 113.75989 * 107.60378 * 17 16 15 36 36 H 1.09000 * 109.46957 * 190.56971 * 19 18 17 37 37 H 1.08997 * 109.46935 * 310.56555 * 19 18 17 38 38 H 1.08995 * 109.47306 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47199 * 300.00055 * 20 19 18 40 40 H 1.09005 * 109.46926 * 59.99856 * 20 19 18 41 41 H 1.09003 * 113.75970 * 221.08698 * 21 18 17 42 42 H 1.08999 * 113.76324 * 89.71620 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1284 1.4430 0.0596 5 6 1.6060 2.1286 -1.2696 6 1 0.9649 2.9964 -1.2223 7 6 2.0276 1.6486 -2.4914 8 7 1.4696 2.0876 -3.5984 9 14 3.3914 0.3748 -2.5744 10 1 4.6918 1.0558 -2.7994 11 1 3.4424 -0.3798 -1.2964 12 1 3.1243 -0.5642 -3.6935 13 7 1.4859 2.1578 1.1572 14 6 1.8021 3.5908 1.0911 15 6 1.9630 1.5710 2.4166 16 6 1.0796 2.0511 3.5698 17 6 1.5213 3.3983 4.1693 18 7 1.2405 2.7876 5.4901 19 6 2.2909 3.1227 6.4609 20 6 2.1918 4.6045 6.8283 21 6 1.4477 1.4335 4.9310 22 1 -0.3634 0.5892 0.8419 23 1 -0.3633 0.4345 -0.9314 24 1 -0.3633 -1.0238 0.0893 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.7659 1.7496 -4.4580 28 1 1.3769 4.0151 0.1815 29 1 1.3806 4.0964 1.9599 30 1 2.8839 3.7242 1.0830 31 1 1.9166 0.4839 2.3516 32 1 2.9928 1.8807 2.5946 33 1 0.0155 2.0015 3.3390 34 1 2.5744 3.6273 4.0064 35 1 0.8606 4.2283 3.9186 36 1 2.1633 2.5166 7.3578 37 1 3.2683 2.9216 6.0225 38 1 2.9708 4.8531 7.5490 39 1 2.3193 5.2106 5.9314 40 1 1.2142 4.8056 7.2667 41 1 0.7283 0.6963 5.2877 42 1 2.4793 1.0865 4.9912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692717279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = 44.447994 kcal Electronic energy + Delta-G solvation = -18336.294177 eV Core-core repulsion = 15738.833423 eV Total energy + Delta-G solvation = -2597.460754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05776 -37.24231 -33.48453 -32.29554 -31.41707 -28.70720 -26.69451 -26.37776 -25.33337 -23.42695 -22.32243 -20.95389 -19.45646 -19.00673 -16.44521 -16.05675 -15.62559 -15.39016 -14.57447 -14.46273 -14.05279 -13.54874 -13.13919 -12.85223 -12.68431 -12.49720 -12.35925 -12.27140 -11.78843 -11.44626 -11.22435 -11.17332 -11.07040 -10.97841 -10.69489 -10.49166 -10.27064 -10.05229 -10.02339 -9.88176 -9.10278 -8.89263 -8.76091 -8.44436 -7.29959 -6.07119 -4.01644 3.26467 3.36071 3.38717 3.94388 4.42196 4.50930 4.75925 4.87682 5.03496 5.15555 5.27629 5.31540 5.43435 5.47665 5.61769 5.71267 5.76850 5.81797 5.86810 5.98215 6.02234 6.04978 6.12091 6.28157 6.28992 6.32863 6.43291 6.51267 6.56638 6.81317 6.85279 7.01781 7.07822 7.15293 7.23854 7.51902 7.68257 7.99136 8.13220 8.67776 9.01757 9.57737 11.05466 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039832 B = 0.005636 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.783900 B = 4966.506600 C = 5136.135366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.188 3.812 4 H -0.011 1.011 5 C -0.504 4.504 6 H 0.082 0.918 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.285 1.285 11 H -0.248 1.248 12 H -0.287 1.287 13 N -0.521 5.521 14 C 0.035 3.965 15 C 0.056 3.944 16 C -0.100 4.100 17 C 0.008 3.992 18 N -0.483 5.483 19 C 0.016 3.984 20 C -0.147 4.147 21 C 0.003 3.997 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.019 0.981 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.009 0.991 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -0.070 16.502 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.081 3.919 4 H 0.006 0.994 5 C -0.542 4.542 6 H 0.100 0.900 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.683 3.317 10 H -0.212 1.212 11 H -0.172 1.172 12 H -0.213 1.213 13 N -0.244 5.244 14 C -0.113 4.113 15 C -0.073 4.073 16 C -0.119 4.119 17 C -0.121 4.121 18 N -0.206 5.206 19 C -0.113 4.113 20 C -0.205 4.205 21 C -0.126 4.126 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.885 0.035 16.648 16.671 hybrid contribution 2.633 -0.763 -0.526 2.791 sum 3.518 -0.728 16.122 16.517 Atomic orbital electron populations 1.21473 0.95628 0.97912 1.03209 1.22033 0.97177 0.97740 0.98724 1.19620 0.91640 0.91101 0.89551 0.99371 1.20918 1.30987 1.14470 0.87818 0.89991 1.24854 0.96120 0.96039 0.95666 1.69939 1.40807 1.44715 0.97823 0.87434 0.83221 0.82472 0.78532 1.21154 1.17204 1.21294 1.61910 1.59097 1.02549 1.00886 1.22335 0.97493 0.89528 1.01982 1.22163 0.94641 1.00027 0.90512 1.22975 1.02025 0.94302 0.92648 1.24100 1.00121 0.98595 0.89255 1.68588 1.40858 1.04799 1.06354 1.22573 0.93720 0.97509 0.97478 1.21713 1.02040 0.95328 1.01372 1.23968 1.00629 0.92964 0.95025 0.92434 0.91729 0.96204 0.92541 0.95468 0.92774 0.90066 0.93278 0.97292 0.90717 0.96173 0.87562 0.91685 0.89449 0.91014 0.94530 0.92560 0.92656 0.91969 0.89528 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.51 37.16 0.35 -2.23 16 2 C -0.12 -2.57 4.57 -26.73 -0.12 -2.70 16 3 C 0.19 4.34 1.32 -68.86 -0.09 4.25 16 4 H -0.01 -0.27 7.12 -51.93 -0.37 -0.64 16 5 C -0.50 -13.57 7.39 -34.44 -0.25 -13.83 16 6 H 0.08 2.41 6.42 -52.48 -0.34 2.07 16 7 C 0.08 2.10 5.37 -17.82 -0.10 2.01 16 8 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 9 Si 0.86 20.87 25.72 -169.99 -4.37 16.49 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.25 -5.66 5.10 56.52 0.29 -5.38 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.52 -10.34 3.58 -236.29 -0.85 -11.19 16 14 C 0.03 0.66 8.85 60.07 0.53 1.19 16 15 C 0.06 0.92 4.76 -3.82 -0.02 0.90 16 16 C -0.10 -1.40 3.83 -89.69 -0.34 -1.75 16 17 C 0.01 0.10 4.80 -2.63 -0.01 0.09 16 18 N -0.48 -6.02 6.26 -238.05 -1.49 -7.51 16 19 C 0.02 0.17 5.54 -3.83 -0.02 0.15 16 20 C -0.15 -1.40 9.98 37.16 0.37 -1.03 16 21 C 0.00 0.04 7.54 -2.76 -0.02 0.02 16 22 H 0.06 1.15 7.35 -51.93 -0.38 0.77 16 23 H 0.06 1.51 7.49 -51.93 -0.39 1.12 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 1.29 4.12 -51.93 -0.21 1.08 16 26 H 0.03 0.53 6.35 -51.93 -0.33 0.20 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.08 1.72 6.05 -51.93 -0.31 1.41 16 29 H 0.05 0.79 5.36 -51.93 -0.28 0.51 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 1.24 5.87 -51.93 -0.30 0.94 16 32 H 0.02 0.33 7.78 -51.93 -0.40 -0.07 16 33 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.06 0.85 7.57 -51.93 -0.39 0.45 16 35 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.39 7.70 -51.93 -0.40 -0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.55 7.55 -51.93 -0.39 0.16 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.75 7.75 -51.93 -0.40 0.34 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -28.46 309.65 -8.50 -36.96 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.51 Total: -0.52 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 0.28 Total: -12.92 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -1.56 Total: -44.67 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.37 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.46 -8.50 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692717279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.408 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds