Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 H 1.09003 * 109.46839 * 176.67742 * 3 2 1 5 5 C 1.50703 * 109.46645 * 296.67641 * 3 2 1 6 6 H 1.08003 * 119.99431 * 118.77397 * 5 3 2 7 7 C 1.37871 * 119.99998 * 298.76738 * 5 3 2 8 8 N 1.31516 * 119.99836 * 167.89634 * 7 5 3 9 9 Si 1.86800 * 120.00154 * 347.89281 * 7 5 3 10 10 H 1.48502 * 109.47044 * 264.68260 * 9 7 5 11 11 H 1.48500 * 109.47263 * 24.68284 * 9 7 5 12 12 H 1.48503 * 109.47042 * 144.68749 * 9 7 5 13 13 N 1.46898 * 109.47104 * 56.67475 * 3 2 1 14 14 C 1.46903 * 110.99922 * 187.80938 * 13 3 2 15 15 C 1.46902 * 110.99881 * 63.85968 * 13 3 2 16 16 C 1.52998 * 109.46989 * 196.26762 * 15 13 3 17 17 C 1.53933 * 113.73536 * 273.76569 * 16 15 13 18 18 N 1.48197 * 86.10170 * 221.95701 * 17 16 15 19 19 C 1.46898 * 111.06774 * 137.52259 * 18 17 16 20 20 C 1.52995 * 109.47465 * 70.56769 * 19 18 17 21 21 C 1.47956 * 90.79701 * 24.60249 * 18 17 16 22 22 H 1.08997 * 109.47420 * 304.98756 * 1 2 3 23 23 H 1.09002 * 109.46684 * 64.99154 * 1 2 3 24 24 H 1.09003 * 109.47161 * 184.98707 * 1 2 3 25 25 H 1.08997 * 109.46944 * 239.99523 * 2 1 3 26 26 H 1.09005 * 109.46757 * 119.99595 * 2 1 3 27 27 H 0.97002 * 120.00194 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46607 * 60.00043 * 14 13 3 29 29 H 1.08992 * 109.47329 * 180.02562 * 14 13 3 30 30 H 1.08998 * 109.47170 * 300.00398 * 14 13 3 31 31 H 1.08996 * 109.47359 * 316.27080 * 15 13 3 32 32 H 1.09001 * 109.46948 * 76.27152 * 15 13 3 33 33 H 1.09001 * 112.94096 * 45.33617 * 16 15 13 34 34 H 1.08993 * 113.76024 * 336.23813 * 17 16 15 35 35 H 1.09007 * 113.75989 * 107.60378 * 17 16 15 36 36 H 1.09000 * 109.46957 * 190.56971 * 19 18 17 37 37 H 1.08997 * 109.46935 * 310.56555 * 19 18 17 38 38 H 1.08995 * 109.47306 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47199 * 300.00055 * 20 19 18 40 40 H 1.09005 * 109.46926 * 59.99856 * 20 19 18 41 41 H 1.09003 * 113.75970 * 221.08698 * 21 18 17 42 42 H 1.08999 * 113.76324 * 89.71620 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1284 1.4430 0.0596 5 6 1.6060 2.1286 -1.2696 6 1 0.9649 2.9964 -1.2223 7 6 2.0276 1.6486 -2.4914 8 7 1.4696 2.0876 -3.5984 9 14 3.3914 0.3748 -2.5744 10 1 4.6918 1.0558 -2.7994 11 1 3.4424 -0.3798 -1.2964 12 1 3.1243 -0.5642 -3.6935 13 7 1.4859 2.1578 1.1572 14 6 1.8021 3.5908 1.0911 15 6 1.9630 1.5710 2.4166 16 6 1.0796 2.0511 3.5698 17 6 1.5213 3.3983 4.1693 18 7 1.2405 2.7876 5.4901 19 6 2.2909 3.1227 6.4609 20 6 2.1918 4.6045 6.8283 21 6 1.4477 1.4335 4.9310 22 1 -0.3634 0.5892 0.8419 23 1 -0.3633 0.4345 -0.9314 24 1 -0.3633 -1.0238 0.0893 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.7659 1.7496 -4.4580 28 1 1.3769 4.0151 0.1815 29 1 1.3806 4.0964 1.9599 30 1 2.8839 3.7242 1.0830 31 1 1.9166 0.4839 2.3516 32 1 2.9928 1.8807 2.5946 33 1 0.0155 2.0015 3.3390 34 1 2.5744 3.6273 4.0064 35 1 0.8606 4.2283 3.9186 36 1 2.1633 2.5166 7.3578 37 1 3.2683 2.9216 6.0225 38 1 2.9708 4.8531 7.5490 39 1 2.3193 5.2106 5.9314 40 1 1.2142 4.8056 7.2667 41 1 0.7283 0.6963 5.2877 42 1 2.4793 1.0865 4.9912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692717279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = 24.435694 kcal Electronic energy + Delta-G solvation = -18337.161976 eV Core-core repulsion = 15738.833423 eV Total energy + Delta-G solvation = -2598.328552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10875 -38.84082 -35.04601 -33.73349 -33.08977 -30.04361 -28.37446 -27.59631 -26.55614 -24.94902 -23.89586 -22.05618 -20.74031 -20.51517 -18.42809 -17.27880 -17.06001 -16.53149 -16.01103 -15.74854 -15.58246 -14.99446 -14.67322 -14.34756 -14.25131 -13.96287 -13.54890 -13.26640 -13.08212 -12.89768 -12.78814 -12.64534 -12.45238 -12.34035 -12.09834 -11.94347 -11.84304 -11.66308 -11.41314 -11.16664 -10.97697 -10.78952 -10.49781 -9.71866 -8.91445 -8.23504 -6.21441 1.32602 1.37951 1.45259 2.37582 2.99654 3.09039 3.23725 3.65539 3.92764 4.07480 4.22526 4.36010 4.38327 4.44855 4.52171 4.56275 4.60180 4.61066 4.66401 4.72255 4.79969 4.82307 4.90695 4.93049 5.00950 5.06387 5.12700 5.20620 5.23543 5.29252 5.39661 5.41691 5.47726 5.49216 5.75219 5.84506 6.10698 6.15851 6.43779 6.79059 6.84305 7.41740 8.92646 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039832 B = 0.005636 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.783900 B = 4966.506600 C = 5136.135366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C 0.190 3.810 4 H -0.018 1.018 5 C -0.497 4.497 6 H 0.042 0.958 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.913 3.087 10 H -0.286 1.286 11 H -0.218 1.218 12 H -0.288 1.288 13 N -0.530 5.530 14 C 0.042 3.958 15 C 0.060 3.940 16 C -0.100 4.100 17 C 0.010 3.990 18 N -0.493 5.493 19 C 0.014 3.986 20 C -0.145 4.145 21 C 0.013 3.987 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.008 0.992 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -1.545 19.161 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.157 4.157 3 C 0.082 3.918 4 H 0.000 1.000 5 C -0.535 4.535 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.586 5.586 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.141 1.141 12 H -0.214 1.214 13 N -0.253 5.253 14 C -0.106 4.106 15 C -0.068 4.068 16 C -0.119 4.119 17 C -0.118 4.118 18 N -0.216 5.216 19 C -0.114 4.114 20 C -0.202 4.202 21 C -0.116 4.116 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.925 -1.443 19.347 19.496 hybrid contribution 2.242 -0.208 -1.286 2.593 sum 4.167 -1.650 18.062 18.610 Atomic orbital electron populations 1.21355 0.95130 0.99470 1.01323 1.21993 0.97633 0.96508 0.99615 1.19486 0.91170 0.92105 0.89002 1.00048 1.21122 1.29353 1.13151 0.89872 0.93957 1.25633 0.98421 0.98516 0.95261 1.70085 1.42918 1.47059 0.98509 0.86498 0.79726 0.80196 0.79712 1.21296 1.14073 1.21414 1.61855 1.59350 1.02689 1.01456 1.22240 0.97308 0.89446 1.01642 1.22211 0.95314 1.00031 0.89276 1.22877 1.00810 0.95532 0.92698 1.24037 1.00043 0.97959 0.89762 1.68586 1.41826 1.04929 1.06249 1.22641 0.93194 0.98251 0.97338 1.21700 1.02457 0.94611 1.01438 1.23958 1.01501 0.93005 0.93109 0.91989 0.95484 0.93300 0.93687 0.92283 0.92883 0.93388 0.90411 0.97368 0.90334 0.95718 0.88740 0.91509 0.89911 0.90002 0.94292 0.90911 0.93386 0.92347 0.88519 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 9.51 71.98 0.68 -3.91 16 2 C -0.12 -4.90 4.57 30.59 0.14 -4.76 16 3 C 0.19 8.61 1.32 44.17 0.06 8.67 16 4 H -0.02 -0.83 7.12 -2.39 -0.02 -0.85 16 5 C -0.50 -27.44 7.39 25.60 0.19 -27.25 16 6 H 0.04 2.62 6.42 -2.91 -0.02 2.61 16 7 C 0.02 1.08 5.37 84.65 0.45 1.54 16 8 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 9 Si 0.91 42.96 25.72 68.60 1.76 44.72 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.22 -9.15 5.10 99.48 0.51 -8.64 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 N -0.53 -20.51 3.58 -901.47 -3.23 -23.73 16 14 C 0.04 1.58 8.85 127.69 1.13 2.71 16 15 C 0.06 1.82 4.76 86.30 0.41 2.23 16 16 C -0.10 -2.55 3.83 -10.15 -0.04 -2.59 16 17 C 0.01 0.25 4.80 86.36 0.41 0.66 16 18 N -0.49 -10.96 6.26 -907.07 -5.68 -16.64 16 19 C 0.01 0.26 5.54 86.30 0.48 0.74 16 20 C -0.14 -2.41 9.98 71.98 0.72 -1.70 16 21 C 0.01 0.28 7.54 86.41 0.65 0.93 16 22 H 0.06 2.38 7.35 -2.39 -0.02 2.36 16 23 H 0.03 1.24 7.49 -2.39 -0.02 1.23 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.04 1.94 4.12 -2.39 -0.01 1.93 16 26 H 0.06 2.06 6.35 -2.38 -0.02 2.05 16 27 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.05 2.12 6.05 -2.39 -0.01 2.10 16 29 H 0.08 2.44 5.36 -2.39 -0.01 2.43 16 30 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 2.32 5.87 -2.39 -0.01 2.31 16 32 H 0.02 0.74 7.78 -2.39 -0.02 0.72 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 1.58 7.57 -2.39 -0.02 1.56 16 35 H 0.08 2.04 7.58 -2.38 -0.02 2.02 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 0.71 7.70 -2.39 -0.02 0.69 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 0.86 7.55 -2.39 -0.02 0.85 16 40 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 1.44 7.75 -2.39 -0.02 1.43 16 Total: -1.00 -62.38 309.65 -0.78 -63.17 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.77 Total: 13.47 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 5.29 Total: -22.73 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -8.61 Total: -98.63 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.76 Total: 44.72 kcal Total: -62.38 -0.78 -63.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692717279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.601 kcal (2) G-P(sol) polarization free energy of solvation -62.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds