Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47404 * 2 1 4 4 N 1.46894 * 109.47303 * 174.74829 * 3 2 1 5 5 C 1.48558 * 111.00063 * 174.68971 * 4 3 2 6 6 C 1.54385 * 104.59542 * 200.95489 * 5 4 3 7 7 C 1.54259 * 105.05617 * 23.85075 * 6 5 4 8 8 H 1.08998 * 110.32613 * 241.00119 * 7 6 5 9 9 C 1.53007 * 110.32317 * 118.89778 * 7 6 5 10 10 N 1.46895 * 109.47117 * 66.44987 * 9 7 6 11 11 C 1.46901 * 111.00116 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47319 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47092 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00003 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99617 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99853 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47252 * 60.00169 * 17 15 13 19 19 H 1.48499 * 109.46899 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47314 * 299.99750 * 17 15 13 21 21 C 1.48557 * 111.00477 * 59.26514 * 4 3 2 22 22 H 1.09001 * 109.47668 * 59.99824 * 1 2 3 23 23 H 1.09001 * 109.47338 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47137 * 299.99759 * 1 2 3 25 25 H 1.09003 * 109.46762 * 239.99878 * 2 1 3 26 26 H 1.09002 * 109.47321 * 120.00589 * 2 1 3 27 27 H 1.08996 * 109.47000 * 54.74140 * 3 2 1 28 28 H 1.09007 * 109.46845 * 294.74609 * 3 2 1 29 29 H 1.09000 * 110.41287 * 82.17606 * 5 4 3 30 30 H 1.08999 * 110.41018 * 319.73214 * 5 4 3 31 31 H 1.09000 * 110.32371 * 264.95538 * 6 5 4 32 32 H 1.09005 * 110.40924 * 142.78625 * 6 5 4 33 33 H 1.08995 * 109.47011 * 306.44755 * 9 7 6 34 34 H 1.08998 * 109.46932 * 186.45306 * 9 7 6 35 35 H 1.00901 * 111.00132 * 56.05029 * 10 9 7 36 36 H 1.09003 * 109.46904 * 300.00164 * 11 10 9 37 37 H 1.09000 * 109.47006 * 59.99598 * 11 10 9 38 38 H 1.08995 * 109.46976 * 300.00066 * 12 11 10 39 39 H 1.09001 * 109.47113 * 60.00579 * 12 11 10 40 40 H 0.97002 * 119.99493 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.40802 * 40.25957 * 21 4 3 42 42 H 1.09004 * 110.40959 * 277.82353 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5035 1.4444 0.1268 5 6 4.0468 2.8214 0.0028 6 6 5.5280 2.6219 -0.3843 7 6 5.5865 1.2264 -1.0392 8 1 6.2473 0.5699 -0.4731 9 6 6.0648 1.3390 -2.4882 10 7 7.4617 1.7929 -2.5089 11 6 7.9562 1.9122 -3.8870 12 6 9.4106 2.3867 -3.8678 13 6 9.9180 2.5085 -5.2816 14 1 9.2679 2.2716 -6.1109 15 6 11.2121 2.9224 -5.5164 16 7 12.0037 3.2104 -4.5064 17 14 11.8407 3.0740 -7.2688 18 1 11.0098 4.0570 -8.0095 19 1 13.2524 3.5345 -7.2501 20 1 11.7597 1.7518 -7.9400 21 6 4.1359 0.7002 -0.9927 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6019 1.9827 0.8391 28 1 1.7556 1.9284 -0.9334 29 1 3.9702 3.3475 0.9543 30 1 3.5201 3.3689 -0.7789 31 1 6.1586 2.6498 0.5043 32 1 5.8416 3.3869 -1.0947 33 1 5.4416 2.0566 -3.0218 34 1 5.9921 0.3648 -2.9715 35 1 8.0497 1.1783 -1.9661 36 1 7.8967 0.9417 -4.3796 37 1 7.3461 2.6336 -4.4307 38 1 9.4696 3.3573 -3.3753 39 1 10.0209 1.6656 -3.3241 40 1 12.9140 3.5019 -4.6716 41 1 3.6231 0.9157 -1.9301 42 1 4.1263 -0.3709 -0.7906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693021245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = -21.858508 kcal Electronic energy + Delta-G solvation = -17026.097126 eV Core-core repulsion = 14425.761106 eV Total energy + Delta-G solvation = -2600.336020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35108 -36.22067 -34.52739 -32.96026 -31.30974 -29.47171 -28.58026 -25.89533 -24.56150 -22.98996 -21.90053 -20.75038 -20.57198 -19.64546 -16.37723 -16.24524 -15.83028 -15.31023 -14.98560 -14.43412 -14.38654 -13.80309 -13.60752 -13.10646 -12.85969 -12.76798 -12.48672 -12.09944 -12.03583 -11.77018 -11.38117 -11.16952 -11.08897 -10.94345 -10.92561 -10.86577 -10.69664 -10.51724 -10.33990 -9.94614 -9.35062 -9.14759 -8.61232 -8.34157 -7.79432 -5.98799 -4.01474 3.33828 3.38134 3.40482 3.85073 4.41397 4.52387 4.57740 4.76178 4.88247 4.93581 5.11358 5.12024 5.26936 5.28202 5.36948 5.40926 5.47196 5.54011 5.58586 5.67775 5.71016 5.74824 5.83867 5.90396 5.98120 6.05306 6.10214 6.33578 6.36991 6.38295 6.44615 6.77591 6.92201 6.99132 7.49706 7.74274 7.84069 7.97812 8.09938 8.44691 9.05650 9.62133 11.12617 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.058205 B = 0.003239 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.939543 B = 8641.852476 C = 8887.719069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.044 3.956 4 N -0.513 5.513 5 C 0.030 3.970 6 C -0.110 4.110 7 C -0.089 4.089 8 H 0.077 0.923 9 C 0.066 3.934 10 N -0.690 5.690 11 C 0.066 3.934 12 C 0.026 3.974 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.038 3.962 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.336 0.664 36 H 0.014 0.986 37 H 0.056 0.944 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 -4.840 9.507 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.085 4.085 4 N -0.237 5.237 5 C -0.098 4.098 6 C -0.148 4.148 7 C -0.108 4.108 8 H 0.095 0.905 9 C -0.064 4.064 10 N -0.320 5.320 11 C -0.062 4.062 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.071 0.929 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.090 4.090 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.153 0.847 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.784 -4.342 10.115 22.639 hybrid contribution 0.262 -0.478 -2.034 2.106 sum -19.522 -4.820 8.080 21.671 Atomic orbital electron populations 1.21738 0.95657 1.01731 1.01742 1.21547 0.95511 0.96401 1.02652 1.22321 0.88484 0.97275 1.00377 1.65426 1.05031 1.11048 1.42207 1.23176 0.96019 0.90067 1.00527 1.22255 0.94423 0.97163 1.00926 1.21898 0.95252 0.97348 0.96351 0.90473 1.21985 0.91754 0.97874 0.94810 1.60572 1.01549 1.54748 1.15148 1.22151 0.99575 0.98182 0.86312 1.19058 0.88218 0.97079 0.96804 1.21149 0.97255 1.45295 0.92457 0.92859 1.25006 0.96949 0.95432 0.96987 1.69966 1.07226 1.45710 1.30350 0.86644 0.77807 0.78445 0.85004 1.20236 1.21253 1.20298 1.23131 0.94396 0.98994 0.92516 0.92886 0.92571 0.92665 0.92049 0.91094 0.90818 0.94867 0.90425 0.94069 0.91262 0.89897 0.91663 0.95985 0.84688 0.96771 0.92510 0.95657 0.96820 0.92928 0.93808 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.01 5.64 -26.73 -0.15 -1.16 16 3 C 0.04 0.41 4.93 -3.83 -0.02 0.39 16 4 N -0.51 -5.68 5.45 -229.98 -1.25 -6.93 16 5 C 0.03 0.33 6.49 -2.18 -0.01 0.32 16 6 C -0.11 -1.37 6.47 -25.35 -0.16 -1.53 16 7 C -0.09 -1.11 3.25 -89.24 -0.29 -1.40 16 8 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 9 C 0.07 0.96 4.77 -3.82 -0.02 0.94 16 10 N -0.69 -12.30 6.23 -113.78 -0.71 -13.01 16 11 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 12 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.04 0.42 4.88 -2.19 -0.01 0.41 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.52 7.21 -51.93 -0.37 0.15 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.45 7.89 -51.93 -0.41 0.04 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.16 7.63 -51.93 -0.40 0.76 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.34 5.82 8.73 -39.29 -0.34 5.48 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.04 0.49 7.70 -51.93 -0.40 0.09 16 42 H 0.08 0.83 7.78 -51.93 -0.40 0.42 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -29.78 332.54 -10.31 -40.09 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.20 Total: -1.02 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.88 Total: -14.53 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -1.23 Total: -46.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.78 -10.31 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693021245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.235 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds