Wall clock time and date at job start Mon Mar 30 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46888 * 2 1 4 4 H 1.08999 * 109.47681 * 300.98412 * 3 2 1 5 5 C 1.50701 * 109.47196 * 180.97778 * 3 2 1 6 6 H 1.07997 * 120.00411 * 244.25065 * 5 3 2 7 7 C 1.37882 * 119.99666 * 64.24837 * 5 3 2 8 8 N 1.31521 * 119.99884 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00241 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47286 * 90.00003 * 9 7 5 11 11 H 1.48502 * 109.47110 * 210.00380 * 9 7 5 12 12 H 1.48498 * 109.46975 * 330.00066 * 9 7 5 13 13 N 1.46904 * 109.46991 * 60.98341 * 3 2 1 14 14 C 1.46895 * 110.99996 * 195.33365 * 13 3 2 15 15 C 1.53001 * 109.47262 * 71.61482 * 14 13 3 16 16 C 1.46905 * 110.99951 * 71.38468 * 13 3 2 17 17 H 1.08997 * 110.76613 * 46.04538 * 16 13 3 18 18 C 1.55137 * 110.70708 * 169.25348 * 16 13 3 19 19 C 1.54906 * 101.68993 * 154.01405 * 18 16 13 20 20 N 1.47890 * 104.77304 * 322.98189 * 19 18 16 21 21 C 1.46897 * 111.01548 * 146.33033 * 20 19 18 22 22 C 1.47440 * 108.58740 * 24.03742 * 20 19 18 23 23 H 1.09003 * 109.47056 * 305.05385 * 1 2 3 24 24 H 1.08997 * 109.47103 * 65.05985 * 1 2 3 25 25 H 1.09000 * 109.46653 * 185.05915 * 1 2 3 26 26 H 1.08998 * 109.46729 * 240.00294 * 2 1 3 27 27 H 1.08995 * 109.47243 * 120.00799 * 2 1 3 28 28 H 0.96999 * 119.99846 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47232 * 191.61129 * 14 13 3 30 30 H 1.08994 * 109.47578 * 311.61438 * 14 13 3 31 31 H 1.08998 * 109.46950 * 294.66441 * 15 14 13 32 32 H 1.09007 * 109.46757 * 54.65810 * 15 14 13 33 33 H 1.08996 * 109.47577 * 174.65744 * 15 14 13 34 34 H 1.08998 * 110.99138 * 272.12367 * 18 16 13 35 35 H 1.08998 * 110.99174 * 35.90286 * 18 16 13 36 36 H 1.09001 * 110.37446 * 81.77294 * 19 18 16 37 37 H 1.08997 * 110.37316 * 204.12134 * 19 18 16 38 38 H 1.09002 * 109.47258 * 299.12144 * 21 20 19 39 39 H 1.08997 * 109.47529 * 59.12008 * 21 20 19 40 40 H 1.09005 * 109.47005 * 179.12062 * 21 20 19 41 41 H 1.09004 * 109.88982 * 239.63925 * 22 20 19 42 42 H 1.08996 * 110.02560 * 118.52658 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6624 1.9614 -0.8810 5 6 3.5468 1.4426 -0.0242 6 1 4.1003 1.8442 0.8116 7 6 4.2188 0.9300 -1.1137 8 7 3.5447 0.4414 -2.1318 9 14 6.0865 0.9294 -1.1436 10 1 6.5907 -0.3352 -0.5508 11 1 6.5591 1.0414 -2.5469 12 1 6.5944 2.0819 -0.3568 13 7 1.5698 2.1280 1.2112 14 6 1.7195 3.5838 1.0838 15 6 0.6879 4.1174 0.0878 16 6 2.2686 1.6293 2.4033 17 1 3.3417 1.5647 2.2235 18 6 1.9713 2.5305 3.6306 19 6 2.1775 1.5407 4.8041 20 7 1.6513 0.2512 4.3068 21 6 2.4164 -0.8767 4.8549 22 6 1.7039 0.2590 2.8333 23 1 -0.3633 0.5903 0.8413 24 1 -0.3633 0.4333 -0.9318 25 1 -0.3632 -1.0237 0.0906 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.0174 0.0811 -2.8984 29 1 1.5620 4.0516 2.0556 30 1 2.7228 3.8161 0.7271 31 1 0.9034 3.7226 -0.9050 32 1 -0.3098 3.8035 0.3949 33 1 0.7350 5.2061 0.0640 34 1 2.6790 3.3575 3.6883 35 1 0.9455 2.8982 3.6056 36 1 3.2372 1.4508 5.0430 37 1 1.6166 1.8679 5.6796 38 1 3.4576 -0.7952 4.5428 39 1 2.3609 -0.8587 5.9433 40 1 1.9985 -1.8131 4.4852 41 1 0.7017 0.1265 2.4257 42 1 2.3566 -0.5387 2.4789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693502211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:44 Heat of formation + Delta-G solvation = 14.486777 kcal Electronic energy + Delta-G solvation = -19179.645676 eV Core-core repulsion = 16580.885707 eV Total energy + Delta-G solvation = -2598.759970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13336 -36.42422 -33.18369 -31.59401 -31.08977 -29.10221 -27.61126 -26.15397 -24.69367 -23.07387 -21.56751 -20.34800 -19.95163 -18.80823 -16.43634 -15.78321 -15.19518 -14.85233 -14.03710 -13.86984 -13.76958 -13.25205 -13.05206 -12.84985 -12.39255 -12.25183 -11.71280 -11.59982 -11.32637 -11.27187 -11.13874 -10.96402 -10.89705 -10.80823 -10.50611 -10.33865 -10.11674 -10.04477 -9.75323 -9.49935 -9.46406 -8.95230 -8.35524 -7.91875 -7.06442 -6.01034 -4.12469 3.23606 3.31472 3.33443 4.37525 4.40759 4.94582 5.19069 5.25384 5.27977 5.55112 5.64109 5.74774 5.85488 5.94584 5.98994 6.06412 6.11456 6.17959 6.24876 6.34759 6.37327 6.44331 6.52383 6.55074 6.66095 6.76052 6.81660 6.85605 6.97236 7.16156 7.21475 7.35109 7.43116 7.46607 7.64462 7.78708 7.98919 8.17775 8.32385 8.51691 8.98845 9.54428 10.99855 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.009746 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.831727 B = 2872.179894 C = 3255.228664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.211 3.789 4 H 0.044 0.956 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.883 3.117 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.523 5.523 14 C 0.053 3.947 15 C -0.141 4.141 16 C 0.069 3.931 17 H 0.067 0.933 18 C -0.129 4.129 19 C 0.043 3.957 20 N -0.538 5.538 21 C 0.021 3.979 22 C 0.053 3.947 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.024 0.976 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.261 0.739 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 1.822 9.185 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.105 3.895 4 H 0.062 0.938 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.248 5.248 14 C -0.075 4.075 15 C -0.198 4.198 16 C -0.041 4.041 17 H 0.084 0.916 18 C -0.167 4.167 19 C -0.085 4.085 20 N -0.262 5.262 21 C -0.128 4.128 22 C -0.074 4.074 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.105 1.561 9.203 10.197 hybrid contribution 2.950 0.131 -0.529 3.000 sum -1.155 1.692 8.674 8.913 Atomic orbital electron populations 1.21773 0.98841 0.98530 1.00696 1.21759 0.92329 0.99431 1.01909 1.19304 0.92202 0.90945 0.87066 0.93774 1.21718 0.92790 1.40661 1.03103 0.92546 1.24894 0.97751 0.95118 0.95510 1.69911 1.35014 1.40311 1.06913 0.86747 0.86584 0.78308 0.77269 1.20755 1.21169 1.20153 1.62554 1.55346 1.03110 1.03763 1.21915 0.97947 0.89727 0.97955 1.21723 0.99395 0.98529 1.00196 1.22771 0.98059 0.93414 0.89881 0.91576 1.22879 1.02019 0.97300 0.94510 1.22974 0.97529 0.89999 0.98025 1.63695 1.52033 1.02135 1.08346 1.22495 0.95720 0.94831 0.99707 1.23175 1.02295 0.97062 0.84908 0.92576 0.94498 0.95712 0.90262 0.93728 0.92938 0.92618 0.94534 0.92443 0.92850 0.93890 0.91850 0.90326 0.94237 0.91013 0.95714 0.92157 0.91650 0.89092 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.20 37.16 0.34 -2.49 16 2 C -0.12 -2.67 4.72 -26.73 -0.13 -2.80 16 3 C 0.21 5.02 1.54 -68.87 -0.11 4.91 16 4 H 0.04 1.18 6.37 -51.93 -0.33 0.85 16 5 C -0.54 -14.17 6.98 -34.44 -0.24 -14.41 16 6 H 0.06 1.49 5.80 -52.49 -0.30 1.19 16 7 C 0.07 1.88 5.32 -17.81 -0.09 1.79 16 8 N -0.88 -24.59 11.63 55.43 0.64 -23.95 16 9 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.52 -10.65 3.47 -217.94 -0.76 -11.40 16 14 C 0.05 1.00 5.36 -3.83 -0.02 0.98 16 15 C -0.14 -2.44 9.87 37.16 0.37 -2.07 16 16 C 0.07 1.32 2.41 -65.89 -0.16 1.16 16 17 H 0.07 1.46 5.42 -51.93 -0.28 1.18 16 18 C -0.13 -2.05 4.87 -24.59 -0.12 -2.17 16 19 C 0.04 0.63 6.73 -2.27 -0.02 0.62 16 20 N -0.54 -8.70 5.44 -239.48 -1.30 -10.01 16 21 C 0.02 0.30 9.12 60.06 0.55 0.85 16 22 C 0.05 0.97 4.61 -2.84 -0.01 0.96 16 23 H 0.06 1.10 6.31 -51.93 -0.33 0.77 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 2.07 6.39 -51.93 -0.33 1.73 16 27 H 0.04 1.01 4.41 -51.93 -0.23 0.78 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.06 0.93 5.76 -51.93 -0.30 0.63 16 30 H 0.04 0.77 7.39 -51.93 -0.38 0.38 16 31 H 0.06 1.11 6.72 -51.93 -0.35 0.76 16 32 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 35 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 36 H 0.04 0.56 7.78 -51.93 -0.40 0.16 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.35 8.11 -51.93 -0.42 -0.07 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.77 5.60 -51.93 -0.29 1.48 16 42 H 0.06 1.10 6.14 -51.93 -0.32 0.78 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -26.69 305.23 -8.65 -35.34 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.18 Total: 2.17 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 0.36 Total: -12.69 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -1.41 Total: -45.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.69 -8.65 -35.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.830 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds