Wall clock time and date at job start Mon Mar 30 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46888 * 2 1 4 4 H 1.08999 * 109.47681 * 300.98412 * 3 2 1 5 5 C 1.50701 * 109.47196 * 180.97778 * 3 2 1 6 6 H 1.07997 * 120.00411 * 244.25065 * 5 3 2 7 7 C 1.37882 * 119.99666 * 64.24837 * 5 3 2 8 8 N 1.31521 * 119.99884 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00241 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47286 * 90.00003 * 9 7 5 11 11 H 1.48502 * 109.47110 * 210.00380 * 9 7 5 12 12 H 1.48498 * 109.46975 * 330.00066 * 9 7 5 13 13 N 1.46904 * 109.46991 * 60.98341 * 3 2 1 14 14 C 1.46895 * 110.99996 * 195.33365 * 13 3 2 15 15 C 1.53001 * 109.47262 * 71.61482 * 14 13 3 16 16 C 1.46905 * 110.99951 * 71.38468 * 13 3 2 17 17 H 1.08997 * 110.76613 * 46.04538 * 16 13 3 18 18 C 1.55137 * 110.70708 * 169.25348 * 16 13 3 19 19 C 1.54906 * 101.68993 * 154.01405 * 18 16 13 20 20 N 1.47890 * 104.77304 * 322.98189 * 19 18 16 21 21 C 1.46897 * 111.01548 * 146.33033 * 20 19 18 22 22 C 1.47440 * 108.58740 * 24.03742 * 20 19 18 23 23 H 1.09003 * 109.47056 * 305.05385 * 1 2 3 24 24 H 1.08997 * 109.47103 * 65.05985 * 1 2 3 25 25 H 1.09000 * 109.46653 * 185.05915 * 1 2 3 26 26 H 1.08998 * 109.46729 * 240.00294 * 2 1 3 27 27 H 1.08995 * 109.47243 * 120.00799 * 2 1 3 28 28 H 0.96999 * 119.99846 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47232 * 191.61129 * 14 13 3 30 30 H 1.08994 * 109.47578 * 311.61438 * 14 13 3 31 31 H 1.08998 * 109.46950 * 294.66441 * 15 14 13 32 32 H 1.09007 * 109.46757 * 54.65810 * 15 14 13 33 33 H 1.08996 * 109.47577 * 174.65744 * 15 14 13 34 34 H 1.08998 * 110.99138 * 272.12367 * 18 16 13 35 35 H 1.08998 * 110.99174 * 35.90286 * 18 16 13 36 36 H 1.09001 * 110.37446 * 81.77294 * 19 18 16 37 37 H 1.08997 * 110.37316 * 204.12134 * 19 18 16 38 38 H 1.09002 * 109.47258 * 299.12144 * 21 20 19 39 39 H 1.08997 * 109.47529 * 59.12008 * 21 20 19 40 40 H 1.09005 * 109.47005 * 179.12062 * 21 20 19 41 41 H 1.09004 * 109.88982 * 239.63925 * 22 20 19 42 42 H 1.08996 * 110.02560 * 118.52658 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6624 1.9614 -0.8810 5 6 3.5468 1.4426 -0.0242 6 1 4.1003 1.8442 0.8116 7 6 4.2188 0.9300 -1.1137 8 7 3.5447 0.4414 -2.1318 9 14 6.0865 0.9294 -1.1436 10 1 6.5907 -0.3352 -0.5508 11 1 6.5591 1.0414 -2.5469 12 1 6.5944 2.0819 -0.3568 13 7 1.5698 2.1280 1.2112 14 6 1.7195 3.5838 1.0838 15 6 0.6879 4.1174 0.0878 16 6 2.2686 1.6293 2.4033 17 1 3.3417 1.5647 2.2235 18 6 1.9713 2.5305 3.6306 19 6 2.1775 1.5407 4.8041 20 7 1.6513 0.2512 4.3068 21 6 2.4164 -0.8767 4.8549 22 6 1.7039 0.2590 2.8333 23 1 -0.3633 0.5903 0.8413 24 1 -0.3633 0.4333 -0.9318 25 1 -0.3632 -1.0237 0.0906 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.0174 0.0811 -2.8984 29 1 1.5620 4.0516 2.0556 30 1 2.7228 3.8161 0.7271 31 1 0.9034 3.7226 -0.9050 32 1 -0.3098 3.8035 0.3949 33 1 0.7350 5.2061 0.0640 34 1 2.6790 3.3575 3.6883 35 1 0.9455 2.8982 3.6056 36 1 3.2372 1.4508 5.0430 37 1 1.6166 1.8679 5.6796 38 1 3.4576 -0.7952 4.5428 39 1 2.3609 -0.8587 5.9433 40 1 1.9985 -1.8131 4.4852 41 1 0.7017 0.1265 2.4257 42 1 2.3566 -0.5387 2.4789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693502211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:44 Heat of formation + Delta-G solvation = -2.398325 kcal Electronic energy + Delta-G solvation = -19180.377869 eV Core-core repulsion = 16580.885707 eV Total energy + Delta-G solvation = -2599.492163 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62341 -37.96109 -35.00333 -33.48054 -32.43832 -30.59292 -29.19121 -27.85281 -26.10708 -24.81943 -23.08355 -21.81268 -21.47149 -20.57927 -18.28773 -17.26554 -16.84150 -16.57732 -15.62624 -15.40050 -15.15998 -14.86918 -14.57658 -14.40215 -13.79387 -13.73689 -13.47636 -13.15219 -13.01771 -12.89188 -12.69598 -12.53153 -12.34813 -12.30102 -12.17550 -11.84219 -11.73446 -11.60510 -11.47790 -11.28204 -11.24011 -10.79017 -10.38746 -9.24214 -8.82636 -8.04057 -6.24043 1.32332 1.34982 1.42428 2.37651 3.12150 3.15812 3.45305 3.82099 3.96327 4.27473 4.38606 4.47474 4.49810 4.59656 4.61280 4.69929 4.74185 4.77943 4.82777 4.85398 4.95402 4.99245 4.99726 5.09570 5.13220 5.24127 5.28792 5.30069 5.35458 5.47584 5.49844 5.57126 5.70184 5.86200 6.05798 6.09523 6.20025 6.25348 6.42008 6.77264 7.00427 7.45914 8.92273 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.009746 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.831727 B = 2872.179894 C = 3255.228664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C 0.221 3.779 4 H 0.012 0.988 5 C -0.548 4.548 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.939 3.061 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.518 5.518 14 C 0.051 3.949 15 C -0.133 4.133 16 C 0.064 3.936 17 H 0.034 0.966 18 C -0.119 4.119 19 C 0.045 3.955 20 N -0.542 5.542 21 C 0.020 3.980 22 C 0.063 3.937 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.009 0.991 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.097 0.903 38 H 0.016 0.984 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 2.442 11.312 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.113 3.887 4 H 0.029 0.971 5 C -0.587 4.587 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.765 3.235 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.241 5.241 14 C -0.077 4.077 15 C -0.191 4.191 16 C -0.046 4.046 17 H 0.052 0.948 18 C -0.158 4.158 19 C -0.082 4.082 20 N -0.266 5.266 21 C -0.128 4.128 22 C -0.065 4.065 23 H 0.082 0.918 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.516 2.188 11.350 12.410 hybrid contribution 3.073 -0.044 -1.144 3.279 sum -1.444 2.145 10.206 10.528 Atomic orbital electron populations 1.21620 0.96374 0.99828 1.00639 1.21606 0.94462 0.98541 1.00241 1.19025 0.90881 0.91298 0.87471 0.97057 1.21992 0.94249 1.39795 1.02649 0.93210 1.25561 1.01507 0.95214 0.95440 1.70035 1.36302 1.41281 1.07370 0.85859 0.82168 0.78250 0.77174 1.20441 1.20953 1.19881 1.62539 1.54869 1.03860 1.02875 1.22028 0.96955 0.88957 0.99766 1.21660 0.99219 1.00166 0.98039 1.22766 0.96000 0.95124 0.90705 0.94807 1.22829 1.02605 0.97334 0.92986 1.23059 0.98299 0.88734 0.98145 1.63728 1.52846 1.03523 1.06530 1.22565 0.94926 0.94154 1.01167 1.22939 1.00961 0.95830 0.86780 0.91799 0.95099 0.93853 0.93648 0.93579 0.93096 0.89735 0.97278 0.95329 0.91926 0.91097 0.90731 0.89691 0.93758 0.88450 0.96486 0.89585 0.91457 0.90029 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.20 71.98 0.66 -4.42 16 2 C -0.11 -5.19 4.72 30.59 0.14 -5.05 16 3 C 0.22 10.77 1.54 44.17 0.07 10.84 16 4 H 0.01 0.64 6.37 -2.39 -0.02 0.62 16 5 C -0.55 -29.35 6.98 25.60 0.18 -29.17 16 6 H 0.05 2.70 5.80 -2.91 -0.02 2.68 16 7 C 0.02 1.25 5.32 84.65 0.45 1.70 16 8 N -0.91 -52.29 11.63 21.45 0.25 -52.04 16 9 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.52 -20.99 3.47 -843.42 -2.92 -23.91 16 14 C 0.05 1.89 5.36 86.30 0.46 2.35 16 15 C -0.13 -4.49 9.87 71.98 0.71 -3.78 16 16 C 0.06 2.42 2.41 46.09 0.11 2.53 16 17 H 0.03 1.51 5.42 -2.39 -0.01 1.50 16 18 C -0.12 -3.50 4.87 31.98 0.16 -3.34 16 19 C 0.05 1.19 6.73 86.76 0.58 1.78 16 20 N -0.54 -16.32 5.44 -911.58 -4.96 -21.28 16 21 C 0.02 0.53 9.12 127.69 1.16 1.69 16 22 C 0.06 2.26 4.61 86.65 0.40 2.66 16 23 H 0.06 2.44 6.31 -2.39 -0.02 2.42 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 2.45 6.39 -2.39 -0.02 2.43 16 27 H 0.05 2.13 4.41 -2.39 -0.01 2.12 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.08 2.63 5.76 -2.39 -0.01 2.62 16 30 H 0.01 0.38 7.39 -2.39 -0.02 0.36 16 31 H 0.03 1.11 6.72 -2.39 -0.02 1.09 16 32 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.02 7.90 -2.39 -0.02 2.00 16 35 H 0.08 2.42 7.70 -2.39 -0.02 2.40 16 36 H 0.04 1.13 7.78 -2.39 -0.02 1.12 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.02 0.46 8.11 -2.39 -0.02 0.44 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.08 3.10 5.60 -2.39 -0.01 3.09 16 42 H 0.03 1.38 6.14 -2.39 -0.01 1.36 16 Total: -1.00 -58.36 305.23 0.46 -57.90 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.98 Total: 15.73 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 5.09 Total: -22.21 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -7.64 Total: -97.23 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -58.36 0.46 -57.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.505 kcal (2) G-P(sol) polarization free energy of solvation -58.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds