Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47860 * 2 1 4 4 H 1.09004 * 109.46940 * 59.36223 * 3 2 1 5 5 C 1.50695 * 109.47400 * 179.36433 * 3 2 1 6 6 H 1.08008 * 119.99931 * 122.14069 * 5 3 2 7 7 C 1.37873 * 120.00412 * 302.13768 * 5 3 2 8 8 N 1.31520 * 119.99418 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00569 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47450 * 89.99829 * 9 7 5 11 11 H 1.48503 * 109.47034 * 210.00241 * 9 7 5 12 12 H 1.48500 * 109.46863 * 329.99774 * 9 7 5 13 13 N 1.46908 * 109.47173 * 299.36649 * 3 2 1 14 14 C 1.46888 * 111.00157 * 159.23570 * 13 3 2 15 15 C 1.53004 * 109.47297 * 289.50152 * 14 13 3 16 16 C 1.46902 * 110.99491 * 283.19174 * 13 3 2 17 17 H 1.08997 * 110.90480 * 307.52262 * 16 13 3 18 18 C 1.55436 * 111.10163 * 183.56676 * 16 13 3 19 19 C 1.54319 * 103.04555 * 206.29705 * 18 16 13 20 20 N 1.47449 * 107.23499 * 22.27824 * 19 18 16 21 21 C 1.46898 * 110.99752 * 123.25840 * 20 19 18 22 22 C 1.47845 * 108.56464 * 0.99610 * 20 19 18 23 23 H 1.08999 * 109.46720 * 304.97918 * 1 2 3 24 24 H 1.09007 * 109.46768 * 64.97436 * 1 2 3 25 25 H 1.08988 * 109.47444 * 184.97604 * 1 2 3 26 26 H 1.09003 * 109.46899 * 239.99454 * 2 1 3 27 27 H 1.09001 * 109.47322 * 120.00125 * 2 1 3 28 28 H 0.97002 * 119.99837 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47641 * 49.49953 * 14 13 3 30 30 H 1.09001 * 109.47181 * 169.50096 * 14 13 3 31 31 H 1.08998 * 109.46856 * 65.25661 * 15 14 13 32 32 H 1.09002 * 109.47381 * 185.25310 * 15 14 13 33 33 H 1.08997 * 109.47117 * 305.25485 * 15 14 13 34 34 H 1.08992 * 110.69586 * 87.90056 * 18 16 13 35 35 H 1.08999 * 110.84000 * 324.75338 * 18 16 13 36 36 H 1.09001 * 109.88819 * 262.87540 * 19 18 16 37 37 H 1.08993 * 110.02652 * 141.76096 * 19 18 16 38 38 H 1.08999 * 109.47148 * 299.15935 * 21 20 19 39 39 H 1.08997 * 109.46808 * 59.16347 * 21 20 19 40 40 H 1.09005 * 109.47106 * 179.15817 * 21 20 19 41 41 H 1.08997 * 110.37448 * 94.73037 * 22 20 19 42 42 H 1.09002 * 110.37411 * 216.96501 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6675 1.9595 0.8842 5 6 3.5470 1.4423 0.0158 6 1 4.0953 1.9369 -0.7724 7 6 4.2258 0.8109 1.0363 8 7 3.5580 0.2090 1.9963 9 14 6.0936 0.8113 1.0562 10 1 6.5805 1.9995 1.8021 11 1 6.5819 -0.4241 1.7201 12 1 6.6035 0.8588 -0.3377 13 7 1.5631 2.1305 -1.2071 14 6 1.5934 3.5882 -1.0287 15 6 0.5048 4.0035 -0.0370 16 6 2.3426 1.7279 -2.3853 17 1 3.4108 1.8474 -2.2043 18 6 1.8995 2.5203 -3.6470 19 6 2.2644 1.5660 -4.8036 20 7 2.3360 0.2049 -4.2409 21 6 1.4225 -0.7046 -4.9453 22 6 2.0094 0.2732 -2.8006 23 1 -0.3633 0.5891 0.8420 24 1 -0.3633 0.4348 -0.9313 25 1 -0.3634 -1.0237 0.0891 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0355 -0.2356 2.7141 29 1 2.5685 3.8871 -0.6439 30 1 1.4164 4.0754 -1.9876 31 1 0.7328 3.5919 0.9461 32 1 0.4652 5.0911 0.0247 33 1 -0.4591 3.6235 -0.3755 34 1 2.4538 3.4551 -3.7291 35 1 0.8264 2.7105 -3.6284 36 1 3.2308 1.8449 -5.2235 37 1 1.4981 1.6074 -5.5775 38 1 0.3984 -0.3477 -4.8356 39 1 1.6851 -0.7361 -6.0027 40 1 1.5062 -1.7048 -4.5202 41 1 0.9513 0.0660 -2.6412 42 1 2.6223 -0.4316 -2.2387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693502212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = 17.130315 kcal Electronic energy + Delta-G solvation = -19190.958920 eV Core-core repulsion = 16592.313582 eV Total energy + Delta-G solvation = -2598.645337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.06664 -36.44363 -33.19237 -31.45306 -31.12626 -29.14900 -27.53342 -26.24469 -24.66362 -23.08200 -21.50318 -20.29900 -19.97392 -18.81371 -16.41427 -15.75472 -15.11350 -14.79023 -14.02552 -13.86020 -13.77240 -13.19042 -13.04859 -12.96175 -12.58088 -12.07723 -11.72091 -11.63659 -11.43682 -11.21329 -11.17866 -10.96767 -10.82141 -10.74113 -10.47347 -10.31145 -10.15444 -10.09376 -9.70932 -9.47861 -9.32519 -8.86345 -8.28143 -7.89978 -7.06889 -5.95845 -4.08510 3.28836 3.36466 3.40369 4.38979 4.42476 5.01195 5.16592 5.28685 5.34391 5.49047 5.64423 5.73717 5.82614 5.93201 6.05089 6.05807 6.08664 6.16645 6.23565 6.34990 6.40656 6.42299 6.50768 6.52453 6.72366 6.77428 6.78867 6.86385 6.98915 7.13093 7.19885 7.38600 7.46944 7.48143 7.70128 7.82751 8.05580 8.20250 8.37295 8.55213 9.01555 9.58839 11.03064 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.009792 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.337300 B = 2858.860130 C = 3238.855922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.213 3.787 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.527 5.527 14 C 0.055 3.945 15 C -0.141 4.141 16 C 0.084 3.916 17 H 0.074 0.926 18 C -0.142 4.142 19 C 0.045 3.955 20 N -0.540 5.540 21 C 0.025 3.975 22 C 0.057 3.943 23 H 0.035 0.965 24 H 0.044 0.956 25 H 0.022 0.978 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.260 0.740 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 2.322 -8.984 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C 0.106 3.894 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.252 5.252 14 C -0.074 4.074 15 C -0.199 4.199 16 C -0.026 4.026 17 H 0.092 0.908 18 C -0.180 4.180 19 C -0.083 4.083 20 N -0.264 5.264 21 C -0.124 4.124 22 C -0.070 4.070 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.803 1.871 -8.954 10.332 hybrid contribution 1.086 0.501 0.344 1.245 sum -3.716 2.372 -8.610 9.673 Atomic orbital electron populations 1.21700 0.99263 0.98042 1.00266 1.21914 0.91881 0.99476 1.03015 1.19302 0.92332 0.91035 0.86687 0.94393 1.21745 0.92633 1.34866 1.08823 0.92248 1.24880 0.97895 0.95096 0.95405 1.69868 1.34927 1.35542 1.12002 0.86710 0.86421 0.77397 0.78209 1.20894 1.21222 1.19889 1.62533 1.53086 1.04757 1.04833 1.21871 0.97721 0.89987 0.97803 1.21739 0.99088 0.98895 1.00162 1.22672 0.97999 0.92916 0.88981 0.90833 1.22968 1.01180 0.98282 0.95591 1.22733 1.00369 0.88772 0.96468 1.63648 1.50437 1.08139 1.04211 1.22469 0.93856 0.97496 0.98620 1.23307 0.99781 0.98165 0.85700 0.94536 0.93668 0.95867 0.93314 0.88970 0.92994 0.94712 0.92826 0.92391 0.93837 0.92899 0.91818 0.91396 0.91256 0.93521 0.95911 0.92191 0.91669 0.93060 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.52 37.16 0.35 -2.38 16 2 C -0.12 -2.89 4.74 -26.74 -0.13 -3.02 16 3 C 0.21 5.05 1.62 -68.87 -0.11 4.94 16 4 H 0.04 1.00 6.22 -51.93 -0.32 0.68 16 5 C -0.54 -14.14 7.30 -34.44 -0.25 -14.39 16 6 H 0.06 1.57 5.63 -52.48 -0.30 1.28 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.54 11.16 55.43 0.62 -23.93 16 9 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.53 -10.72 3.68 -217.38 -0.80 -11.52 16 14 C 0.05 1.02 5.44 -3.83 -0.02 1.00 16 15 C -0.14 -2.41 9.86 37.16 0.37 -2.05 16 16 C 0.08 1.63 2.29 -65.41 -0.15 1.48 16 17 H 0.07 1.65 5.47 -51.93 -0.28 1.37 16 18 C -0.14 -2.26 4.93 -24.75 -0.12 -2.38 16 19 C 0.04 0.67 6.90 -2.83 -0.02 0.65 16 20 N -0.54 -9.02 5.45 -239.52 -1.30 -10.33 16 21 C 0.02 0.34 9.12 60.06 0.55 0.89 16 22 C 0.06 1.08 4.35 -2.30 -0.01 1.07 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.88 7.05 -51.92 -0.37 0.51 16 25 H 0.02 0.42 8.14 -51.94 -0.42 0.00 16 26 H 0.05 1.12 4.02 -51.93 -0.21 0.91 16 27 H 0.09 2.42 5.88 -51.93 -0.31 2.11 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.03 0.72 7.65 -51.93 -0.40 0.32 16 30 H 0.05 0.89 6.19 -51.93 -0.32 0.57 16 31 H 0.06 1.10 6.63 -51.93 -0.34 0.75 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.95 7.83 -51.93 -0.41 0.55 16 35 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.62 7.58 -51.93 -0.39 0.22 16 38 H 0.02 0.30 8.09 -51.93 -0.42 -0.11 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.98 6.59 -51.93 -0.34 0.64 16 42 H 0.09 1.94 6.27 -51.93 -0.33 1.61 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -26.63 306.99 -8.77 -35.40 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.25 Total: 2.07 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 0.36 Total: -12.41 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -1.49 Total: -45.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.63 -8.77 -35.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.526 kcal (2) G-P(sol) polarization free energy of solvation -26.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds