Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47860 * 2 1 4 4 H 1.09004 * 109.46940 * 59.36223 * 3 2 1 5 5 C 1.50695 * 109.47400 * 179.36433 * 3 2 1 6 6 H 1.08008 * 119.99931 * 122.14069 * 5 3 2 7 7 C 1.37873 * 120.00412 * 302.13768 * 5 3 2 8 8 N 1.31520 * 119.99418 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00569 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47450 * 89.99829 * 9 7 5 11 11 H 1.48503 * 109.47034 * 210.00241 * 9 7 5 12 12 H 1.48500 * 109.46863 * 329.99774 * 9 7 5 13 13 N 1.46908 * 109.47173 * 299.36649 * 3 2 1 14 14 C 1.46888 * 111.00157 * 159.23570 * 13 3 2 15 15 C 1.53004 * 109.47297 * 289.50152 * 14 13 3 16 16 C 1.46902 * 110.99491 * 283.19174 * 13 3 2 17 17 H 1.08997 * 110.90480 * 307.52262 * 16 13 3 18 18 C 1.55436 * 111.10163 * 183.56676 * 16 13 3 19 19 C 1.54319 * 103.04555 * 206.29705 * 18 16 13 20 20 N 1.47449 * 107.23499 * 22.27824 * 19 18 16 21 21 C 1.46898 * 110.99752 * 123.25840 * 20 19 18 22 22 C 1.47845 * 108.56464 * 0.99610 * 20 19 18 23 23 H 1.08999 * 109.46720 * 304.97918 * 1 2 3 24 24 H 1.09007 * 109.46768 * 64.97436 * 1 2 3 25 25 H 1.08988 * 109.47444 * 184.97604 * 1 2 3 26 26 H 1.09003 * 109.46899 * 239.99454 * 2 1 3 27 27 H 1.09001 * 109.47322 * 120.00125 * 2 1 3 28 28 H 0.97002 * 119.99837 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47641 * 49.49953 * 14 13 3 30 30 H 1.09001 * 109.47181 * 169.50096 * 14 13 3 31 31 H 1.08998 * 109.46856 * 65.25661 * 15 14 13 32 32 H 1.09002 * 109.47381 * 185.25310 * 15 14 13 33 33 H 1.08997 * 109.47117 * 305.25485 * 15 14 13 34 34 H 1.08992 * 110.69586 * 87.90056 * 18 16 13 35 35 H 1.08999 * 110.84000 * 324.75338 * 18 16 13 36 36 H 1.09001 * 109.88819 * 262.87540 * 19 18 16 37 37 H 1.08993 * 110.02652 * 141.76096 * 19 18 16 38 38 H 1.08999 * 109.47148 * 299.15935 * 21 20 19 39 39 H 1.08997 * 109.46808 * 59.16347 * 21 20 19 40 40 H 1.09005 * 109.47106 * 179.15817 * 21 20 19 41 41 H 1.08997 * 110.37448 * 94.73037 * 22 20 19 42 42 H 1.09002 * 110.37411 * 216.96501 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6675 1.9595 0.8842 5 6 3.5470 1.4423 0.0158 6 1 4.0953 1.9369 -0.7724 7 6 4.2258 0.8109 1.0363 8 7 3.5580 0.2090 1.9963 9 14 6.0936 0.8113 1.0562 10 1 6.5805 1.9995 1.8021 11 1 6.5819 -0.4241 1.7201 12 1 6.6035 0.8588 -0.3377 13 7 1.5631 2.1305 -1.2071 14 6 1.5934 3.5882 -1.0287 15 6 0.5048 4.0035 -0.0370 16 6 2.3426 1.7279 -2.3853 17 1 3.4108 1.8474 -2.2043 18 6 1.8995 2.5203 -3.6470 19 6 2.2644 1.5660 -4.8036 20 7 2.3360 0.2049 -4.2409 21 6 1.4225 -0.7046 -4.9453 22 6 2.0094 0.2732 -2.8006 23 1 -0.3633 0.5891 0.8420 24 1 -0.3633 0.4348 -0.9313 25 1 -0.3634 -1.0237 0.0891 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0355 -0.2356 2.7141 29 1 2.5685 3.8871 -0.6439 30 1 1.4164 4.0754 -1.9876 31 1 0.7328 3.5919 0.9461 32 1 0.4652 5.0911 0.0247 33 1 -0.4591 3.6235 -0.3755 34 1 2.4538 3.4551 -3.7291 35 1 0.8264 2.7105 -3.6284 36 1 3.2308 1.8449 -5.2235 37 1 1.4981 1.6074 -5.5775 38 1 0.3984 -0.3477 -4.8356 39 1 1.6851 -0.7361 -6.0027 40 1 1.5062 -1.7048 -4.5202 41 1 0.9513 0.0660 -2.6412 42 1 2.6223 -0.4316 -2.2387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693502212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = 0.197605 kcal Electronic energy + Delta-G solvation = -19191.693177 eV Core-core repulsion = 16592.313582 eV Total energy + Delta-G solvation = -2599.379595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56327 -37.98370 -35.01990 -33.33891 -32.47269 -30.62833 -29.09734 -27.95027 -26.06984 -24.82561 -23.02658 -21.74169 -21.53457 -20.57584 -18.25514 -17.25654 -16.75015 -16.54831 -15.56667 -15.48158 -15.13261 -14.80201 -14.58464 -14.39849 -14.00205 -13.61863 -13.47965 -13.10328 -13.04236 -12.87628 -12.74042 -12.51453 -12.48816 -12.13772 -12.04003 -11.94264 -11.71930 -11.69124 -11.42062 -11.27861 -11.11176 -10.72926 -10.29914 -9.17981 -8.84560 -7.99583 -6.20165 1.35532 1.38736 1.46891 2.41451 3.04444 3.18894 3.58382 3.83563 3.97042 4.23697 4.37300 4.48028 4.55555 4.58043 4.63008 4.71579 4.75183 4.80506 4.81221 4.85089 4.96046 4.98768 5.02172 5.08934 5.10842 5.25963 5.29192 5.31229 5.35671 5.47017 5.47717 5.59985 5.74746 5.88580 6.06764 6.19018 6.24904 6.27423 6.47142 6.78152 7.02680 7.49810 8.94866 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.009792 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.337300 B = 2858.860130 C = 3238.855922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.939 3.061 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.520 5.520 14 C 0.052 3.948 15 C -0.133 4.133 16 C 0.078 3.922 17 H 0.039 0.961 18 C -0.130 4.130 19 C 0.047 3.953 20 N -0.556 5.556 21 C 0.024 3.976 22 C 0.070 3.930 23 H 0.030 0.970 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.259 0.741 29 H 0.008 0.992 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 3.020 -11.070 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.115 3.885 4 H 0.026 0.974 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.766 3.234 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.244 5.244 14 C -0.076 4.076 15 C -0.191 4.191 16 C -0.031 4.031 17 H 0.056 0.944 18 C -0.168 4.168 19 C -0.081 4.081 20 N -0.281 5.281 21 C -0.124 4.124 22 C -0.057 4.057 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.626 2.576 -11.057 12.671 hybrid contribution 1.346 0.300 0.945 1.672 sum -4.280 2.876 -10.112 11.351 Atomic orbital electron populations 1.21542 0.96733 0.99126 1.00491 1.21763 0.94082 0.98663 1.01376 1.19031 0.90935 0.91407 0.87158 0.97434 1.22011 0.94170 1.34077 1.08252 0.93079 1.25527 1.01459 0.95221 0.95413 1.69998 1.36070 1.36339 1.12480 0.85855 0.82263 0.77360 0.77961 1.20561 1.20959 1.19913 1.62525 1.52473 1.05621 1.03799 1.21993 0.97014 0.89028 0.99561 1.21672 0.98705 1.00634 0.98085 1.22640 0.95931 0.94436 0.90136 0.94361 1.22893 1.01746 0.98533 0.93651 1.22789 1.01633 0.87242 0.96420 1.63565 1.51767 1.09751 1.03021 1.22538 0.93674 0.96702 0.99495 1.22980 0.98726 0.96812 0.87222 0.95085 0.92633 0.94205 0.93277 0.92279 0.93155 0.97331 0.90003 0.95140 0.91012 0.91999 0.90644 0.90478 0.90719 0.90862 0.95179 0.89907 0.91898 0.93180 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.52 71.98 0.69 -4.16 16 2 C -0.12 -5.72 4.74 30.59 0.15 -5.57 16 3 C 0.22 10.83 1.62 44.16 0.07 10.90 16 4 H 0.01 0.43 6.22 -2.39 -0.01 0.41 16 5 C -0.55 -29.42 7.30 25.60 0.19 -29.23 16 6 H 0.05 2.80 5.63 -2.91 -0.02 2.78 16 7 C 0.02 1.29 5.29 84.65 0.45 1.74 16 8 N -0.91 -52.06 11.16 21.45 0.24 -51.82 16 9 Si 0.94 44.30 29.54 68.60 2.03 46.32 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.52 -21.04 3.68 -841.64 -3.10 -24.14 16 14 C 0.05 1.91 5.44 86.31 0.47 2.38 16 15 C -0.13 -4.41 9.86 71.98 0.71 -3.70 16 16 C 0.08 3.01 2.29 46.40 0.11 3.11 16 17 H 0.04 1.76 5.47 -2.39 -0.01 1.75 16 18 C -0.13 -3.80 4.93 31.88 0.16 -3.64 16 19 C 0.05 1.26 6.90 86.65 0.60 1.85 16 20 N -0.56 -17.53 5.45 -911.69 -4.96 -22.50 16 21 C 0.02 0.60 9.12 127.69 1.17 1.77 16 22 C 0.07 2.61 4.35 86.77 0.38 2.99 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 2.08 7.05 -2.38 -0.02 2.06 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 2.31 4.02 -2.39 -0.01 2.30 16 27 H 0.06 3.21 5.88 -2.39 -0.01 3.20 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.01 0.35 7.65 -2.39 -0.02 0.33 16 30 H 0.08 2.52 6.19 -2.39 -0.01 2.51 16 31 H 0.03 1.16 6.63 -2.39 -0.02 1.14 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.04 7.83 -2.39 -0.02 2.02 16 35 H 0.08 2.15 8.05 -2.39 -0.02 2.13 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.60 7.58 -2.39 -0.02 1.58 16 38 H 0.03 0.71 8.09 -2.39 -0.02 0.69 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.05 1.86 6.59 -2.39 -0.02 1.84 16 42 H 0.06 2.48 6.27 -2.39 -0.01 2.47 16 Total: -1.00 -58.57 306.99 0.30 -58.28 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.97 Total: 15.41 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 5.12 Total: -21.55 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -7.83 Total: -98.46 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -58.57 0.30 -58.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.475 kcal (2) G-P(sol) polarization free energy of solvation -58.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds