Wall clock time and date at job start Mon Mar 30 2020 03:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 H 1.08994 * 109.47353 * 54.75727 * 3 2 1 5 5 C 1.50703 * 109.46949 * 174.75952 * 3 2 1 6 6 H 1.08000 * 120.00229 * 114.74253 * 5 3 2 7 7 C 1.37880 * 119.99593 * 294.74195 * 5 3 2 8 8 N 1.31518 * 119.99742 * 164.85242 * 7 5 3 9 9 Si 1.86792 * 120.00151 * 344.84990 * 7 5 3 10 10 H 1.48499 * 109.47287 * 272.80683 * 9 7 5 11 11 H 1.48497 * 109.47107 * 32.81062 * 9 7 5 12 12 H 1.48507 * 109.47083 * 152.80727 * 9 7 5 13 13 N 1.46903 * 109.46824 * 294.75487 * 3 2 1 14 14 C 1.46897 * 111.00263 * 319.27121 * 13 3 2 15 15 C 1.53002 * 109.47451 * 197.98459 * 14 13 3 16 16 C 1.46896 * 110.99776 * 83.22855 * 13 3 2 17 17 H 1.09001 * 110.28908 * 288.99774 * 16 13 3 18 18 C 1.54262 * 110.32681 * 51.13132 * 16 13 3 19 19 C 1.54374 * 105.06222 * 118.89407 * 18 16 13 20 20 N 1.48563 * 104.59595 * 23.85401 * 19 18 16 21 21 C 1.46903 * 111.00349 * 200.95945 * 20 19 18 22 22 C 1.48565 * 104.22074 * 320.51569 * 20 19 18 23 23 H 1.08998 * 109.47218 * 76.58581 * 1 2 3 24 24 H 1.08998 * 109.46850 * 196.59453 * 1 2 3 25 25 H 1.09002 * 109.46879 * 316.59026 * 1 2 3 26 26 H 1.09000 * 109.47028 * 239.99891 * 2 1 3 27 27 H 1.09000 * 109.46926 * 120.00083 * 2 1 3 28 28 H 0.96995 * 119.99986 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47552 * 317.98668 * 14 13 3 30 30 H 1.09005 * 109.47087 * 77.98245 * 14 13 3 31 31 H 1.09001 * 109.46866 * 50.52279 * 15 14 13 32 32 H 1.09000 * 109.47043 * 170.52483 * 15 14 13 33 33 H 1.08994 * 109.46848 * 290.52771 * 15 14 13 34 34 H 1.08999 * 110.32490 * 237.79433 * 18 16 13 35 35 H 1.09000 * 110.31881 * 359.89442 * 18 16 13 36 36 H 1.09003 * 110.41172 * 142.62857 * 19 18 16 37 37 H 1.08996 * 110.41585 * 264.96031 * 19 18 16 38 38 H 1.09003 * 109.46884 * 60.12398 * 21 20 19 39 39 H 1.08994 * 109.47299 * 180.12409 * 21 20 19 40 40 H 1.08994 * 109.46659 * 300.12843 * 21 20 19 41 41 H 1.08999 * 110.41030 * 280.70567 * 22 20 19 42 42 H 1.08997 * 110.41060 * 158.26141 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9827 0.8392 5 6 3.5414 1.4445 0.1298 6 1 4.1531 1.8106 -0.6815 7 6 4.1341 0.9788 1.2843 8 7 5.4191 0.6988 1.2970 9 14 3.1122 0.7458 2.8304 10 1 3.0684 2.0202 3.5916 11 1 1.7322 0.3452 2.4559 12 1 3.7236 -0.3132 3.6730 13 7 1.6564 2.0974 -1.2578 14 6 1.8217 1.1859 -2.3978 15 6 1.8546 1.9940 -3.6965 16 6 0.2809 2.6081 -1.1871 17 1 -0.4300 1.7818 -1.1958 18 6 0.0917 3.4644 0.0820 19 6 -0.2831 4.8700 -0.4346 20 7 -0.8558 4.6323 -1.7846 21 6 -0.8050 5.8528 -2.6006 22 6 0.0044 3.5685 -2.3639 23 1 -0.3633 0.2384 -0.9996 24 1 -0.3633 -0.9849 0.2935 25 1 -0.3633 0.7466 0.7062 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8362 0.3716 2.1093 29 1 2.7555 0.6341 -2.2895 30 1 0.9871 0.4853 -2.4268 31 1 2.5775 2.8043 -3.6020 32 1 2.1437 1.3436 -4.5220 33 1 0.8660 2.4099 -3.8907 34 1 -0.7131 3.0594 0.6955 35 1 1.0190 3.5042 0.6535 36 1 -1.0258 5.3293 0.2178 37 1 0.6041 5.4995 -0.5016 38 1 0.2313 6.1713 -2.7136 39 1 -1.2324 5.6513 -3.5828 40 1 -1.3760 6.6413 -2.1105 41 1 0.9371 3.9937 -2.7347 42 1 -0.5217 3.0478 -3.1639 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693502213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:50 Heat of formation + Delta-G solvation = 31.175825 kcal Electronic energy + Delta-G solvation = -19174.108641 eV Core-core repulsion = 16576.072362 eV Total energy + Delta-G solvation = -2598.036278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.53078 -36.87823 -33.04714 -31.84278 -31.44583 -29.08479 -28.31521 -26.74291 -24.94500 -22.63353 -21.76682 -21.06055 -20.16007 -18.50646 -16.77210 -16.07125 -15.43380 -15.29647 -14.19276 -14.10675 -13.97050 -13.72209 -13.14192 -12.80831 -12.65377 -12.38147 -12.20487 -11.82915 -11.63217 -11.36433 -11.33524 -11.12087 -11.04054 -10.81468 -10.76829 -10.60807 -10.29743 -10.01617 -9.91332 -9.73133 -9.39243 -9.16727 -8.38142 -8.28152 -7.21510 -6.06921 -3.98986 3.28220 3.37059 3.39707 4.19866 4.43399 4.85654 5.00132 5.04540 5.21770 5.41069 5.49232 5.58040 5.61518 5.71633 5.78527 5.86808 5.88621 5.89026 5.94035 6.00254 6.07923 6.14499 6.19297 6.29838 6.30776 6.41446 6.47311 6.59645 6.62305 6.71393 6.75358 6.90694 6.95117 7.04475 7.17863 7.25674 7.72024 8.03524 8.17818 8.71251 9.07764 9.59518 11.06415 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.008559 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.450002 B = 3270.485059 C = 3532.907441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.158 4.158 3 C 0.186 3.814 4 H 0.040 0.960 5 C -0.501 4.501 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.279 1.279 11 H -0.253 1.253 12 H -0.290 1.290 13 N -0.512 5.512 14 C 0.056 3.944 15 C -0.157 4.157 16 C 0.067 3.933 17 H 0.058 0.942 18 C -0.126 4.126 19 C 0.037 3.963 20 N -0.523 5.523 21 C 0.016 3.984 22 C 0.039 3.961 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.262 0.738 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 4.649 -5.686 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.197 4.197 3 C 0.078 3.922 4 H 0.058 0.942 5 C -0.539 4.539 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.683 3.317 10 H -0.205 1.205 11 H -0.177 1.177 12 H -0.216 1.216 13 N -0.236 5.236 14 C -0.072 4.072 15 C -0.214 4.214 16 C -0.043 4.043 17 H 0.075 0.925 18 C -0.164 4.164 19 C -0.091 4.091 20 N -0.247 5.247 21 C -0.134 4.134 22 C -0.089 4.089 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.866 4.837 -5.627 13.995 hybrid contribution -0.079 -0.585 1.030 1.187 sum -11.945 4.252 -4.598 13.487 Atomic orbital electron populations 1.22177 0.98572 1.00174 1.00569 1.22701 0.92873 1.02116 1.02059 1.19837 0.96738 0.88040 0.87546 0.94214 1.20906 0.88907 1.41393 1.02676 0.90338 1.24865 0.94676 0.94685 0.98564 1.69961 1.11074 1.44235 1.27996 0.87349 0.82044 0.78067 0.84269 1.20532 1.17720 1.21586 1.62313 1.19109 1.37803 1.04404 1.22004 1.01090 0.93831 0.90271 1.22160 1.01681 1.00709 0.96868 1.22646 0.91576 0.96296 0.93750 0.92470 1.22557 1.02206 0.93967 0.97668 1.23058 0.97696 0.97619 0.90749 1.65386 1.49000 1.07431 1.02862 1.22458 0.99970 0.92759 0.98169 1.23530 0.95362 0.92968 0.97003 0.92994 0.94319 0.93338 0.92175 0.92205 0.92783 0.89879 0.95745 0.92115 0.93578 0.92785 0.91860 0.89037 0.90919 0.93618 0.95341 0.91723 0.91789 0.92044 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.23 37.16 0.31 -2.48 16 2 C -0.16 -3.33 4.20 -26.73 -0.11 -3.44 16 3 C 0.19 4.18 1.10 -68.86 -0.08 4.10 16 4 H 0.04 0.92 3.96 -51.93 -0.21 0.71 16 5 C -0.50 -13.64 8.59 -34.44 -0.30 -13.93 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.08 5.33 -17.82 -0.10 1.98 16 8 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 9 Si 0.86 20.76 25.83 -169.99 -4.39 16.37 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.25 -5.74 5.49 56.52 0.31 -5.43 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 N -0.51 -10.11 4.20 -218.45 -0.92 -11.03 16 14 C 0.06 1.02 4.09 -3.82 -0.02 1.01 16 15 C -0.16 -2.40 8.65 37.16 0.32 -2.08 16 16 C 0.07 1.13 2.01 -66.33 -0.13 1.00 16 17 H 0.06 0.98 4.54 -51.93 -0.24 0.75 16 18 C -0.13 -2.10 5.57 -25.35 -0.14 -2.24 16 19 C 0.04 0.54 6.49 -2.18 -0.01 0.53 16 20 N -0.52 -7.51 5.66 -238.23 -1.35 -8.86 16 21 C 0.02 0.18 9.53 60.07 0.57 0.76 16 22 C 0.04 0.59 4.07 -2.18 -0.01 0.58 16 23 H 0.05 0.86 4.68 -51.93 -0.24 0.62 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.85 7.26 -51.93 -0.38 0.47 16 26 H 0.06 1.26 6.06 -51.93 -0.31 0.95 16 27 H 0.06 1.35 4.93 -51.93 -0.26 1.10 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.08 1.72 6.92 -51.93 -0.36 1.36 16 30 H 0.02 0.42 5.89 -51.93 -0.31 0.12 16 31 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.75 4.72 -51.93 -0.24 0.50 16 34 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 35 H 0.09 1.74 6.03 -51.93 -0.31 1.42 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.69 7.97 -51.93 -0.41 0.27 16 38 H 0.03 0.34 7.97 -51.93 -0.41 -0.07 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.99 6.46 -51.93 -0.34 0.65 16 42 H 0.07 1.04 6.83 -51.93 -0.35 0.68 16 LS Contribution 294.41 15.07 4.44 4.44 Total: -1.00 -28.64 294.41 -8.10 -36.74 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.96 Total: 2.72 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 0.31 Total: -14.23 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -1.49 Total: -46.03 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.39 Total: 16.37 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.64 -8.10 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.912 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds