Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 H 1.08994 * 109.47353 * 54.75727 * 3 2 1 5 5 C 1.50703 * 109.46949 * 174.75952 * 3 2 1 6 6 H 1.08000 * 120.00229 * 114.74253 * 5 3 2 7 7 C 1.37880 * 119.99593 * 294.74195 * 5 3 2 8 8 N 1.31518 * 119.99742 * 164.85242 * 7 5 3 9 9 Si 1.86792 * 120.00151 * 344.84990 * 7 5 3 10 10 H 1.48499 * 109.47287 * 272.80683 * 9 7 5 11 11 H 1.48497 * 109.47107 * 32.81062 * 9 7 5 12 12 H 1.48507 * 109.47083 * 152.80727 * 9 7 5 13 13 N 1.46903 * 109.46824 * 294.75487 * 3 2 1 14 14 C 1.46897 * 111.00263 * 319.27121 * 13 3 2 15 15 C 1.53002 * 109.47451 * 197.98459 * 14 13 3 16 16 C 1.46896 * 110.99776 * 83.22855 * 13 3 2 17 17 H 1.09001 * 110.28908 * 288.99774 * 16 13 3 18 18 C 1.54262 * 110.32681 * 51.13132 * 16 13 3 19 19 C 1.54374 * 105.06222 * 118.89407 * 18 16 13 20 20 N 1.48563 * 104.59595 * 23.85401 * 19 18 16 21 21 C 1.46903 * 111.00349 * 200.95945 * 20 19 18 22 22 C 1.48565 * 104.22074 * 320.51569 * 20 19 18 23 23 H 1.08998 * 109.47218 * 76.58581 * 1 2 3 24 24 H 1.08998 * 109.46850 * 196.59453 * 1 2 3 25 25 H 1.09002 * 109.46879 * 316.59026 * 1 2 3 26 26 H 1.09000 * 109.47028 * 239.99891 * 2 1 3 27 27 H 1.09000 * 109.46926 * 120.00083 * 2 1 3 28 28 H 0.96995 * 119.99986 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47552 * 317.98668 * 14 13 3 30 30 H 1.09005 * 109.47087 * 77.98245 * 14 13 3 31 31 H 1.09001 * 109.46866 * 50.52279 * 15 14 13 32 32 H 1.09000 * 109.47043 * 170.52483 * 15 14 13 33 33 H 1.08994 * 109.46848 * 290.52771 * 15 14 13 34 34 H 1.08999 * 110.32490 * 237.79433 * 18 16 13 35 35 H 1.09000 * 110.31881 * 359.89442 * 18 16 13 36 36 H 1.09003 * 110.41172 * 142.62857 * 19 18 16 37 37 H 1.08996 * 110.41585 * 264.96031 * 19 18 16 38 38 H 1.09003 * 109.46884 * 60.12398 * 21 20 19 39 39 H 1.08994 * 109.47299 * 180.12409 * 21 20 19 40 40 H 1.08994 * 109.46659 * 300.12843 * 21 20 19 41 41 H 1.08999 * 110.41030 * 280.70567 * 22 20 19 42 42 H 1.08997 * 110.41060 * 158.26141 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9827 0.8392 5 6 3.5414 1.4445 0.1298 6 1 4.1531 1.8106 -0.6815 7 6 4.1341 0.9788 1.2843 8 7 5.4191 0.6988 1.2970 9 14 3.1122 0.7458 2.8304 10 1 3.0684 2.0202 3.5916 11 1 1.7322 0.3452 2.4559 12 1 3.7236 -0.3132 3.6730 13 7 1.6564 2.0974 -1.2578 14 6 1.8217 1.1859 -2.3978 15 6 1.8546 1.9940 -3.6965 16 6 0.2809 2.6081 -1.1871 17 1 -0.4300 1.7818 -1.1958 18 6 0.0917 3.4644 0.0820 19 6 -0.2831 4.8700 -0.4346 20 7 -0.8558 4.6323 -1.7846 21 6 -0.8050 5.8528 -2.6006 22 6 0.0044 3.5685 -2.3639 23 1 -0.3633 0.2384 -0.9996 24 1 -0.3633 -0.9849 0.2935 25 1 -0.3633 0.7466 0.7062 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8362 0.3716 2.1093 29 1 2.7555 0.6341 -2.2895 30 1 0.9871 0.4853 -2.4268 31 1 2.5775 2.8043 -3.6020 32 1 2.1437 1.3436 -4.5220 33 1 0.8660 2.4099 -3.8907 34 1 -0.7131 3.0594 0.6955 35 1 1.0190 3.5042 0.6535 36 1 -1.0258 5.3293 0.2178 37 1 0.6041 5.4995 -0.5016 38 1 0.2313 6.1713 -2.7136 39 1 -1.2324 5.6513 -3.5828 40 1 -1.3760 6.6413 -2.1105 41 1 0.9371 3.9937 -2.7347 42 1 -0.5217 3.0478 -3.1639 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693502213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = 10.110954 kcal Electronic energy + Delta-G solvation = -19175.022082 eV Core-core repulsion = 16576.072362 eV Total energy + Delta-G solvation = -2598.949720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.92079 -38.25518 -34.88770 -33.56433 -32.75174 -30.61775 -29.61472 -28.37392 -26.11316 -24.44512 -23.21542 -22.30656 -21.56421 -20.09096 -18.72982 -17.39190 -16.99181 -16.81612 -15.88373 -15.41425 -15.22531 -15.13346 -14.73272 -14.27820 -14.12276 -13.75862 -13.70466 -13.35156 -13.01819 -12.91881 -12.61041 -12.57255 -12.45880 -12.38837 -12.15712 -12.04618 -11.73055 -11.51354 -11.47400 -11.37328 -11.12831 -11.06920 -10.47830 -9.43421 -8.76023 -8.25980 -6.21669 1.34220 1.37656 1.45797 2.37215 2.99574 3.07966 3.47924 3.77581 3.83614 4.14921 4.25710 4.30854 4.37863 4.43798 4.48435 4.52967 4.60082 4.62101 4.70732 4.76466 4.82679 4.86579 4.95796 4.98730 5.01152 5.04303 5.09988 5.15726 5.19640 5.24389 5.33809 5.35215 5.47852 5.58415 5.72058 5.81840 6.10511 6.17642 6.58612 6.82720 6.84374 7.40921 8.91401 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.008559 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.450002 B = 3270.485059 C = 3532.907441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.157 4.157 3 C 0.192 3.808 4 H 0.042 0.958 5 C -0.500 4.500 6 H 0.029 0.971 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.920 3.080 10 H -0.276 1.276 11 H -0.225 1.225 12 H -0.292 1.292 13 N -0.528 5.528 14 C 0.058 3.942 15 C -0.147 4.147 16 C 0.065 3.935 17 H 0.066 0.934 18 C -0.129 4.129 19 C 0.041 3.959 20 N -0.524 5.524 21 C 0.014 3.986 22 C 0.045 3.955 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.022 0.978 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 4.999 -5.898 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.084 3.916 4 H 0.060 0.940 5 C -0.539 4.539 6 H 0.048 0.952 7 C -0.181 4.181 8 N -0.587 5.587 9 Si 0.745 3.255 10 H -0.202 1.202 11 H -0.147 1.147 12 H -0.218 1.218 13 N -0.253 5.253 14 C -0.070 4.070 15 C -0.204 4.204 16 C -0.043 4.043 17 H 0.083 0.917 18 C -0.167 4.167 19 C -0.087 4.087 20 N -0.248 5.248 21 C -0.134 4.134 22 C -0.082 4.082 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.359 5.201 -5.863 17.243 hybrid contribution 1.061 -0.643 0.985 1.584 sum -14.298 4.559 -4.878 15.780 Atomic orbital electron populations 1.22070 0.95237 1.01576 1.01665 1.22568 0.95780 1.00329 1.00959 1.19599 0.93341 0.89454 0.89169 0.94045 1.21175 0.91571 1.40036 1.01085 0.95248 1.25692 0.95731 0.94673 1.02005 1.70117 1.13316 1.46404 1.28909 0.86299 0.81689 0.77933 0.79622 1.20162 1.14730 1.21812 1.62202 1.21541 1.37967 1.03541 1.21968 0.99704 0.94170 0.91121 1.22073 1.02473 1.00103 0.95756 1.22728 0.89696 0.96874 0.95034 0.91676 1.22545 1.01287 0.95397 0.97438 1.23036 0.97968 0.96279 0.91453 1.65427 1.48245 1.08280 1.02836 1.22542 1.00063 0.92092 0.98727 1.23442 0.95266 0.92967 0.96555 0.91637 0.92372 0.92900 0.92876 0.93870 0.92856 0.93591 0.94253 0.93806 0.91803 0.90659 0.90483 0.91883 0.88909 0.94617 0.95918 0.90254 0.90239 0.93329 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 8.23 71.98 0.59 -4.15 16 2 C -0.16 -6.43 4.20 30.60 0.13 -6.30 16 3 C 0.19 8.66 1.10 44.17 0.05 8.70 16 4 H 0.04 1.88 3.96 -2.39 -0.01 1.87 16 5 C -0.50 -28.42 8.59 25.60 0.22 -28.20 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.02 0.93 5.33 84.65 0.45 1.38 16 8 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 9 Si 0.92 43.35 25.83 68.60 1.77 45.12 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.22 -9.46 5.49 99.48 0.55 -8.92 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 N -0.53 -20.71 4.20 -845.04 -3.55 -24.25 16 14 C 0.06 2.10 4.09 86.30 0.35 2.45 16 15 C -0.15 -4.31 8.65 71.98 0.62 -3.69 16 16 C 0.07 2.08 2.01 45.81 0.09 2.18 16 17 H 0.07 2.00 4.54 -2.39 -0.01 1.99 16 18 C -0.13 -4.03 5.57 31.49 0.18 -3.85 16 19 C 0.04 1.09 6.49 86.45 0.56 1.66 16 20 N -0.52 -13.38 5.66 -907.62 -5.14 -18.52 16 21 C 0.01 0.29 9.53 127.69 1.22 1.51 16 22 C 0.05 1.26 4.07 86.45 0.35 1.61 16 23 H 0.06 1.91 4.68 -2.39 -0.01 1.90 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.65 7.26 -2.39 -0.02 1.63 16 26 H 0.05 2.22 6.06 -2.39 -0.01 2.20 16 27 H 0.04 1.89 4.93 -2.39 -0.01 1.88 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.05 1.97 6.92 -2.39 -0.02 1.96 16 30 H 0.04 1.29 5.89 -2.38 -0.01 1.28 16 31 H 0.04 1.43 7.95 -2.39 -0.02 1.41 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.89 4.72 -2.39 -0.01 1.88 16 34 H 0.08 2.18 7.93 -2.39 -0.02 2.16 16 35 H 0.06 2.34 6.03 -2.39 -0.01 2.33 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.04 1.02 7.97 -2.39 -0.02 1.01 16 38 H 0.02 0.49 7.97 -2.39 -0.02 0.47 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.48 6.46 -2.39 -0.02 1.47 16 42 H 0.09 2.19 6.83 -2.39 -0.02 2.17 16 Total: -1.00 -64.28 294.41 -0.97 -65.25 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.83 Total: 18.32 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.81 Total: -26.70 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -8.38 Total: -102.00 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.77 Total: 45.12 kcal Total: -64.28 -0.97 -65.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.365 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds