Wall clock time and date at job start Mon Mar 30 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47192 * 2 1 4 4 H 1.09005 * 109.47340 * 294.67539 * 3 2 1 5 5 C 1.50703 * 109.47185 * 174.67933 * 3 2 1 6 6 H 1.08003 * 119.99540 * 245.31424 * 5 3 2 7 7 C 1.37878 * 119.99913 * 65.31573 * 5 3 2 8 8 N 1.31506 * 120.00165 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99736 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47568 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47383 * 120.00062 * 9 7 5 12 12 H 1.48503 * 109.47090 * 239.99974 * 9 7 5 13 13 N 1.46900 * 109.47367 * 54.67604 * 3 2 1 14 14 C 1.46907 * 111.00051 * 185.68046 * 13 3 2 15 15 C 1.52994 * 109.47035 * 72.11044 * 14 13 3 16 16 C 1.46898 * 110.99950 * 61.72672 * 13 3 2 17 17 H 1.09002 * 110.27698 * 325.06325 * 16 13 3 18 18 C 1.54591 * 110.39581 * 202.91246 * 16 13 3 19 19 C 1.54934 * 102.92499 * 219.08481 * 18 16 13 20 20 N 1.48533 * 103.22895 * 37.41283 * 19 18 16 21 21 C 1.46896 * 111.00406 * 200.28092 * 20 19 18 22 22 C 1.47904 * 105.81919 * 320.79890 * 20 19 18 23 23 H 1.09000 * 109.47526 * 184.30861 * 1 2 3 24 24 H 1.09005 * 109.47195 * 304.30752 * 1 2 3 25 25 H 1.08995 * 109.47033 * 64.30464 * 1 2 3 26 26 H 1.08996 * 109.46991 * 239.99499 * 2 1 3 27 27 H 1.09003 * 109.46737 * 119.99705 * 2 1 3 28 28 H 0.97004 * 120.00495 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46687 * 192.10722 * 14 13 3 30 30 H 1.09000 * 109.46624 * 312.10825 * 14 13 3 31 31 H 1.09000 * 109.46976 * 174.18090 * 15 14 13 32 32 H 1.09001 * 109.47056 * 294.18119 * 15 14 13 33 33 H 1.09000 * 109.47545 * 54.17649 * 15 14 13 34 34 H 1.09000 * 110.72562 * 337.44446 * 18 16 13 35 35 H 1.09005 * 110.72277 * 100.72354 * 18 16 13 36 36 H 1.08998 * 110.66636 * 278.98081 * 19 18 16 37 37 H 1.08996 * 110.66938 * 155.85056 * 19 18 16 38 38 H 1.08993 * 109.47447 * 177.40110 * 21 20 19 39 39 H 1.08999 * 109.46641 * 297.39909 * 21 20 19 40 40 H 1.09002 * 109.47262 * 57.39367 * 21 20 19 41 41 H 1.09005 * 109.91364 * 265.97524 * 22 20 19 42 42 H 1.09001 * 109.91993 * 144.68532 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7566 1.9281 -0.9339 5 6 3.5413 1.4445 0.1318 6 1 4.0054 1.8619 1.0131 7 6 4.3222 0.9134 -0.8728 8 7 3.7570 0.4056 -1.9462 9 14 6.1829 0.9153 -0.7092 10 1 6.5657 1.5399 0.5826 11 1 6.6851 -0.4815 -0.7522 12 1 6.7775 1.6898 -1.8281 13 7 1.4483 2.1711 1.1300 14 6 1.8087 3.5946 1.0853 15 6 1.0486 4.2775 -0.0534 16 6 1.8431 1.5680 2.4100 17 1 1.9236 0.4857 2.3087 18 6 0.8223 1.9293 3.5133 19 6 1.7218 2.1743 4.7508 20 7 2.9167 2.8432 4.1754 21 6 4.0697 2.7295 5.0785 22 6 3.1809 2.1609 2.8900 23 1 -0.3634 -1.0247 0.0772 24 1 -0.3634 0.5793 0.8489 25 1 -0.3633 0.4456 -0.9260 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.3064 0.0317 -2.6529 29 1 1.5452 4.0659 2.0321 30 1 2.8811 3.6926 0.9165 31 1 1.2355 5.3509 -0.0225 32 1 1.3882 3.8769 -1.0085 33 1 -0.0194 4.0913 0.0596 34 1 0.2737 2.8336 3.2502 35 1 0.1379 1.1000 3.6921 36 1 1.9980 1.2294 5.2188 37 1 1.2224 2.8276 5.4662 38 1 4.9425 3.1872 4.6128 39 1 3.8486 3.2397 6.0159 40 1 4.2735 1.6772 5.2768 41 1 3.9094 1.3633 3.0358 42 1 3.5530 2.8782 2.1585 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693502215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:52 Heat of formation + Delta-G solvation = 1.848015 kcal Electronic energy + Delta-G solvation = -19263.827041 eV Core-core repulsion = 16664.519014 eV Total energy + Delta-G solvation = -2599.308028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82123 -37.85377 -34.80150 -33.37356 -32.55304 -30.65359 -28.76476 -28.07966 -25.99034 -24.91266 -22.97464 -22.13706 -21.87260 -19.64067 -18.40161 -17.28167 -16.74915 -16.47971 -15.68161 -15.60568 -15.19013 -14.85674 -14.78952 -13.96326 -13.84834 -13.52637 -13.27909 -13.12933 -13.07844 -12.80888 -12.68488 -12.55642 -12.42233 -12.23975 -12.06632 -11.97036 -11.79505 -11.64856 -11.49228 -11.35098 -11.01411 -10.61572 -10.36536 -9.34271 -8.83817 -8.00155 -6.17921 1.32546 1.36988 1.44420 2.40721 3.18266 3.21272 3.43136 3.97659 3.99787 4.24757 4.41362 4.45723 4.52852 4.55202 4.66739 4.68554 4.74106 4.77773 4.82249 4.91707 4.94664 4.96483 5.04093 5.08533 5.18811 5.25204 5.31761 5.37316 5.44868 5.47927 5.52376 5.62588 5.68671 5.85143 5.98338 6.09340 6.16828 6.31683 6.49894 6.78595 7.06533 7.52445 8.97417 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.010762 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.012385 B = 2601.046619 C = 3290.202844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C 0.218 3.782 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.073 0.927 7 C 0.022 3.978 8 N -0.915 5.915 9 Si 0.933 3.067 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.516 5.516 14 C 0.061 3.939 15 C -0.134 4.134 16 C 0.085 3.915 17 H 0.065 0.935 18 C -0.106 4.106 19 C 0.037 3.963 20 N -0.531 5.531 21 C 0.018 3.982 22 C 0.017 3.983 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.029 0.971 28 H 0.257 0.743 29 H 0.075 0.925 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 3.558 11.420 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 C 0.111 3.889 4 H 0.029 0.971 5 C -0.591 4.591 6 H 0.090 0.910 7 C -0.178 4.178 8 N -0.555 5.555 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.239 5.239 14 C -0.067 4.067 15 C -0.191 4.191 16 C -0.026 4.026 17 H 0.083 0.917 18 C -0.144 4.144 19 C -0.091 4.091 20 N -0.256 5.256 21 C -0.131 4.131 22 C -0.112 4.112 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.996 4.005 11.127 12.838 hybrid contribution 2.629 -1.173 -0.440 2.912 sum -2.367 2.832 10.687 11.307 Atomic orbital electron populations 1.21586 0.95915 0.99790 1.01134 1.21401 0.94662 0.98448 0.99289 1.19065 0.90416 0.90552 0.88896 0.97080 1.22563 0.93997 1.38207 1.04324 0.90962 1.25559 1.01398 0.95493 0.95329 1.70048 1.35912 1.41093 1.08452 0.85887 0.82764 0.77404 0.77862 1.19594 1.21106 1.21106 1.62603 1.57359 1.02033 1.01890 1.21913 0.96983 0.89105 0.98669 1.21660 1.00486 0.99418 0.97578 1.22402 0.91880 0.98055 0.90219 0.91688 1.22526 0.96931 1.02267 0.92699 1.23294 0.91266 0.97453 0.97075 1.64815 1.05274 1.52024 1.03469 1.22512 0.93511 0.99650 0.97432 1.23703 0.98517 0.96757 0.92201 0.93864 0.91610 0.94814 0.93648 0.95232 0.93350 0.90698 0.96257 0.91530 0.95320 0.92062 0.90441 0.90137 0.93720 0.88412 0.92361 0.89444 0.95812 0.96346 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.77 71.98 0.70 -4.19 16 2 C -0.10 -4.64 4.90 30.59 0.15 -4.49 16 3 C 0.22 10.52 1.65 44.17 0.07 10.59 16 4 H 0.01 0.62 6.63 -2.38 -0.02 0.61 16 5 C -0.55 -28.90 6.84 25.60 0.18 -28.72 16 6 H 0.07 3.72 3.73 -2.91 -0.01 3.71 16 7 C 0.02 1.18 5.33 84.66 0.45 1.63 16 8 N -0.92 -52.54 11.77 21.45 0.25 -52.28 16 9 Si 0.93 43.82 29.54 68.60 2.03 45.85 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.52 -20.65 3.30 -845.15 -2.79 -23.43 16 14 C 0.06 2.33 4.24 86.30 0.37 2.70 16 15 C -0.13 -4.69 9.85 71.98 0.71 -3.98 16 16 C 0.08 3.10 2.50 45.79 0.11 3.21 16 17 H 0.06 2.63 5.72 -2.39 -0.01 2.62 16 18 C -0.11 -3.01 6.48 31.80 0.21 -2.80 16 19 C 0.04 0.94 6.56 86.65 0.57 1.51 16 20 N -0.53 -16.15 5.55 -909.17 -5.05 -21.19 16 21 C 0.02 0.46 9.40 127.69 1.20 1.66 16 22 C 0.02 0.63 3.84 86.45 0.33 0.96 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 2.39 7.28 -2.38 -0.02 2.37 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 2.41 6.63 -2.39 -0.02 2.39 16 27 H 0.03 1.37 6.30 -2.39 -0.02 1.35 16 28 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.07 2.62 6.92 -2.39 -0.02 2.60 16 30 H 0.02 0.84 5.36 -2.39 -0.01 0.83 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.03 1.14 6.90 -2.39 -0.02 1.12 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.22 7.26 -2.39 -0.02 2.21 16 35 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.04 1.09 7.96 -2.39 -0.02 1.07 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.02 0.61 8.00 -2.39 -0.02 0.59 16 41 H 0.02 0.74 7.64 -2.38 -0.02 0.72 16 42 H 0.08 3.34 3.79 -2.39 -0.01 3.34 16 Total: -1.00 -57.32 306.41 0.47 -56.85 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.98 Total: 16.16 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 5.05 Total: -21.94 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -7.58 Total: -96.91 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -57.32 0.47 -56.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.695 kcal (2) G-P(sol) polarization free energy of solvation -57.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds