Wall clock time and date at job start Mon Mar 30 2020 04:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 N 1.46491 * 109.47299 * 120.00493 * 2 1 3 5 5 C 1.36941 * 120.00151 * 300.77423 * 4 2 1 6 6 H 1.08004 * 119.99702 * 321.13993 * 5 4 2 7 7 C 1.38811 * 120.00057 * 141.13522 * 5 4 2 8 8 N 1.31625 * 120.00010 * 339.46728 * 7 5 4 9 9 Si 1.86797 * 120.00147 * 159.46846 * 7 5 4 10 10 H 1.48506 * 109.47124 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47312 * 119.99889 * 9 7 5 12 12 H 1.48506 * 109.47072 * 239.99897 * 9 7 5 13 13 C 1.46502 * 120.00315 * 120.77838 * 4 2 1 14 14 C 1.53000 * 109.47099 * 89.99869 * 13 4 2 15 15 H 1.09001 * 109.50461 * 305.00289 * 14 13 4 16 16 C 1.53124 * 109.50441 * 184.92557 * 14 13 4 17 17 C 1.53121 * 109.15792 * 182.44593 * 16 14 13 18 18 C 1.53035 * 109.31275 * 57.59256 * 17 16 14 19 19 N 1.46850 * 109.52267 * 300.83877 * 18 17 16 20 20 C 1.46900 * 110.99664 * 185.83884 * 19 18 17 21 21 C 1.46849 * 111.19683 * 61.74340 * 19 18 17 22 22 H 1.08993 * 109.47300 * 66.38557 * 1 2 3 23 23 H 1.09003 * 109.46965 * 186.39328 * 1 2 3 24 24 H 1.09001 * 109.46690 * 306.38885 * 1 2 3 25 25 H 1.09000 * 109.46793 * 240.00521 * 2 1 3 26 26 H 1.09005 * 109.47105 * 54.91144 * 3 2 1 27 27 H 1.09005 * 109.47364 * 174.91034 * 3 2 1 28 28 H 1.08995 * 109.47225 * 294.91325 * 3 2 1 29 29 H 0.97000 * 119.99980 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47217 * 209.99804 * 13 4 2 31 31 H 1.09000 * 109.46887 * 330.00183 * 13 4 2 32 32 H 1.08998 * 109.51948 * 302.30819 * 16 14 13 33 33 H 1.08999 * 109.52229 * 62.49822 * 16 14 13 34 34 H 1.09002 * 109.46874 * 297.65064 * 17 16 14 35 35 H 1.09005 * 109.53425 * 177.57574 * 17 16 14 36 36 H 1.09001 * 109.46227 * 180.82575 * 18 17 16 37 37 H 1.08997 * 109.45534 * 60.85290 * 18 17 16 38 38 H 1.08998 * 109.47274 * 295.79237 * 20 19 18 39 39 H 1.08997 * 109.47425 * 55.79396 * 20 19 18 40 40 H 1.09005 * 109.46595 * 175.79433 * 20 19 18 41 41 H 1.09000 * 109.46117 * 178.23760 * 21 19 18 42 42 H 1.08999 * 109.46015 * 58.27328 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6746 -0.2323 2.4398 6 1 1.6284 0.8299 2.6301 7 6 1.3853 -1.1327 3.4559 8 7 1.0440 -2.3695 3.1618 9 14 1.4802 -0.5893 5.2405 10 1 1.8840 0.8385 5.3024 11 1 0.1506 -0.7563 5.8802 12 1 2.4822 -1.4181 5.9577 13 6 2.8747 -1.8718 1.0616 14 6 4.3412 -1.4371 1.0262 15 1 4.4845 -0.7041 0.2322 16 6 5.2296 -2.6562 0.7628 17 6 6.6980 -2.2231 0.7896 18 6 7.0107 -1.5776 2.1415 19 7 6.1354 -0.4161 2.3448 20 6 6.5006 0.3104 3.5683 21 6 4.7222 -0.8143 2.3711 22 1 -0.3633 0.4116 -0.9415 23 1 -0.3633 -1.0213 0.1144 24 1 -0.3633 0.6097 0.8273 25 1 1.8933 -0.5138 -0.8900 26 1 1.6042 1.9820 0.8409 27 1 3.1263 1.4439 0.0912 28 1 1.7530 1.9293 -0.9320 29 1 0.8415 -2.9986 3.8718 30 1 2.7131 -2.5362 1.9104 31 1 2.6286 -2.3957 0.1380 32 1 5.0574 -3.4059 1.5349 33 1 4.9909 -3.0765 -0.2142 34 1 6.8790 -1.5027 -0.0082 35 1 7.3375 -3.0939 0.6455 36 1 8.0518 -1.2551 2.1578 37 1 6.8426 -2.3028 2.9376 38 1 6.3340 -0.3300 4.4345 39 1 7.5521 0.5935 3.5227 40 1 5.8864 1.2067 3.6556 41 1 4.1012 0.0626 2.5544 42 1 4.5650 -1.5430 3.1663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695533009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:47 Heat of formation + Delta-G solvation = 5.691161 kcal Electronic energy + Delta-G solvation = -19078.121242 eV Core-core repulsion = 16478.979866 eV Total energy + Delta-G solvation = -2599.141376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.60174 -36.30424 -33.32112 -32.31537 -31.05403 -28.71097 -26.35458 -26.08617 -25.48394 -23.14059 -22.19300 -20.66976 -19.47471 -18.89605 -16.16453 -15.28030 -14.87633 -14.55038 -14.18956 -14.01599 -13.91924 -13.46290 -12.91337 -12.57092 -12.41402 -12.20977 -11.77446 -11.61117 -11.50609 -11.26280 -11.17086 -10.97740 -10.81897 -10.66557 -10.44347 -10.38108 -10.12645 -9.91830 -9.75268 -9.64198 -9.40390 -9.32407 -8.39087 -7.80087 -6.43775 -5.71498 -3.29347 3.34064 3.44206 3.45687 4.47406 4.50465 5.22319 5.33796 5.37851 5.42650 5.60208 5.69944 5.83013 5.86203 5.99689 6.04440 6.05326 6.18774 6.23566 6.30127 6.33714 6.42810 6.49748 6.50842 6.53135 6.58466 6.77605 6.83357 6.88099 6.90449 6.94946 7.08866 7.24517 7.31005 7.42698 7.65650 7.69165 7.81228 7.90565 8.61159 9.28154 9.90893 10.51402 11.27393 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.010881 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.241211 B = 2572.776649 C = 3280.641732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.164 3.836 3 C -0.152 4.152 4 N -0.579 5.579 5 C -0.242 4.242 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.153 3.847 14 C -0.096 4.096 15 H 0.059 0.941 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.057 3.943 19 N -0.548 5.548 20 C 0.028 3.972 21 C 0.075 3.925 22 H 0.027 0.973 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.251 0.749 30 H 0.091 0.909 31 H 0.023 0.977 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.018 0.982 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.251 1.560 -3.586 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.057 3.943 3 C -0.212 4.212 4 N -0.300 5.300 5 C -0.372 4.372 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.217 1.217 13 C 0.026 3.974 14 C -0.117 4.117 15 H 0.077 0.923 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.072 4.072 19 N -0.273 5.273 20 C -0.120 4.120 21 C -0.051 4.051 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.243 1.741 -3.873 9.273 hybrid contribution -0.060 -0.377 1.826 1.866 sum 8.184 1.364 -2.047 8.545 Atomic orbital electron populations 1.22081 0.98134 1.01484 0.98739 1.20384 0.92179 0.91845 0.89907 1.22172 1.00715 0.98849 0.99427 1.43851 1.53721 1.31508 1.00879 1.18871 1.40683 0.91233 0.86441 0.92445 1.25130 0.98673 0.96555 0.98200 1.70005 1.46934 1.04888 1.31068 0.86558 0.77387 0.78447 0.86499 1.20028 1.21732 1.21674 1.20933 0.85549 0.90322 1.00547 1.21834 0.97905 0.95452 0.96551 0.92260 1.21618 0.94246 0.98694 1.00893 1.21549 0.97088 0.99256 0.97152 1.22026 0.96383 0.91807 0.96936 1.62052 1.05120 1.24169 1.35940 1.22277 1.00566 0.98538 0.90647 1.22131 0.85511 1.00785 0.96715 0.95434 0.93094 0.92911 0.93805 0.93079 0.93391 0.94811 0.93867 0.89161 0.95899 0.92705 0.92603 0.91670 0.92578 0.91976 0.95651 0.96295 0.92382 0.91455 0.88598 0.95856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.05 37.16 0.34 -2.64 16 2 C 0.16 3.41 3.36 -67.93 -0.23 3.19 16 3 C -0.15 -2.88 9.08 37.16 0.34 -2.54 16 4 N -0.58 -13.65 2.23 -165.66 -0.37 -14.02 16 5 C -0.24 -6.22 6.26 -15.06 -0.09 -6.31 16 6 H 0.06 1.52 7.02 -52.48 -0.37 1.15 16 7 C 0.01 0.38 4.96 -17.43 -0.09 0.30 16 8 N -0.89 -24.82 11.51 55.49 0.64 -24.19 16 9 Si 0.88 21.24 29.60 -169.99 -5.03 16.21 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.15 3.48 4.77 -4.04 -0.02 3.46 16 14 C -0.10 -1.89 2.56 -90.54 -0.23 -2.12 16 15 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.12 -1.96 5.29 -26.60 -0.14 -2.11 16 17 C -0.11 -1.66 6.09 -26.65 -0.16 -1.82 16 18 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 19 N -0.55 -9.69 4.91 -242.96 -1.19 -10.88 16 20 C 0.03 0.44 9.59 60.06 0.58 1.02 16 21 C 0.08 1.54 4.28 -3.83 -0.02 1.52 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 25 H 0.04 0.88 7.79 -51.93 -0.40 0.47 16 26 H 0.05 1.01 7.26 -51.93 -0.38 0.63 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.09 2.34 5.58 -51.93 -0.29 2.05 16 31 H 0.02 0.50 7.91 -51.93 -0.41 0.09 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 2.19 6.39 -51.93 -0.33 1.86 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -26.93 320.46 -8.94 -35.86 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -8.06 Total: -0.61 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 0.25 Total: -7.21 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.92 Total: -49.09 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.93 -8.94 -35.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695533009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.556 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds