Wall clock time and date at job start Mon Mar 30 2020 04:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 N 1.46491 * 109.47299 * 120.00493 * 2 1 3 5 5 C 1.36941 * 120.00151 * 300.77423 * 4 2 1 6 6 H 1.08004 * 119.99702 * 321.13993 * 5 4 2 7 7 C 1.38811 * 120.00057 * 141.13522 * 5 4 2 8 8 N 1.31625 * 120.00010 * 339.46728 * 7 5 4 9 9 Si 1.86797 * 120.00147 * 159.46846 * 7 5 4 10 10 H 1.48506 * 109.47124 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47312 * 119.99889 * 9 7 5 12 12 H 1.48506 * 109.47072 * 239.99897 * 9 7 5 13 13 C 1.46502 * 120.00315 * 120.77838 * 4 2 1 14 14 C 1.53000 * 109.47099 * 89.99869 * 13 4 2 15 15 H 1.09001 * 109.50461 * 305.00289 * 14 13 4 16 16 C 1.53124 * 109.50441 * 184.92557 * 14 13 4 17 17 C 1.53121 * 109.15792 * 182.44593 * 16 14 13 18 18 C 1.53035 * 109.31275 * 57.59256 * 17 16 14 19 19 N 1.46850 * 109.52267 * 300.83877 * 18 17 16 20 20 C 1.46900 * 110.99664 * 185.83884 * 19 18 17 21 21 C 1.46849 * 111.19683 * 61.74340 * 19 18 17 22 22 H 1.08993 * 109.47300 * 66.38557 * 1 2 3 23 23 H 1.09003 * 109.46965 * 186.39328 * 1 2 3 24 24 H 1.09001 * 109.46690 * 306.38885 * 1 2 3 25 25 H 1.09000 * 109.46793 * 240.00521 * 2 1 3 26 26 H 1.09005 * 109.47105 * 54.91144 * 3 2 1 27 27 H 1.09005 * 109.47364 * 174.91034 * 3 2 1 28 28 H 1.08995 * 109.47225 * 294.91325 * 3 2 1 29 29 H 0.97000 * 119.99980 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47217 * 209.99804 * 13 4 2 31 31 H 1.09000 * 109.46887 * 330.00183 * 13 4 2 32 32 H 1.08998 * 109.51948 * 302.30819 * 16 14 13 33 33 H 1.08999 * 109.52229 * 62.49822 * 16 14 13 34 34 H 1.09002 * 109.46874 * 297.65064 * 17 16 14 35 35 H 1.09005 * 109.53425 * 177.57574 * 17 16 14 36 36 H 1.09001 * 109.46227 * 180.82575 * 18 17 16 37 37 H 1.08997 * 109.45534 * 60.85290 * 18 17 16 38 38 H 1.08998 * 109.47274 * 295.79237 * 20 19 18 39 39 H 1.08997 * 109.47425 * 55.79396 * 20 19 18 40 40 H 1.09005 * 109.46595 * 175.79433 * 20 19 18 41 41 H 1.09000 * 109.46117 * 178.23760 * 21 19 18 42 42 H 1.08999 * 109.46015 * 58.27328 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6746 -0.2323 2.4398 6 1 1.6284 0.8299 2.6301 7 6 1.3853 -1.1327 3.4559 8 7 1.0440 -2.3695 3.1618 9 14 1.4802 -0.5893 5.2405 10 1 1.8840 0.8385 5.3024 11 1 0.1506 -0.7563 5.8802 12 1 2.4822 -1.4181 5.9577 13 6 2.8747 -1.8718 1.0616 14 6 4.3412 -1.4371 1.0262 15 1 4.4845 -0.7041 0.2322 16 6 5.2296 -2.6562 0.7628 17 6 6.6980 -2.2231 0.7896 18 6 7.0107 -1.5776 2.1415 19 7 6.1354 -0.4161 2.3448 20 6 6.5006 0.3104 3.5683 21 6 4.7222 -0.8143 2.3711 22 1 -0.3633 0.4116 -0.9415 23 1 -0.3633 -1.0213 0.1144 24 1 -0.3633 0.6097 0.8273 25 1 1.8933 -0.5138 -0.8900 26 1 1.6042 1.9820 0.8409 27 1 3.1263 1.4439 0.0912 28 1 1.7530 1.9293 -0.9320 29 1 0.8415 -2.9986 3.8718 30 1 2.7131 -2.5362 1.9104 31 1 2.6286 -2.3957 0.1380 32 1 5.0574 -3.4059 1.5349 33 1 4.9909 -3.0765 -0.2142 34 1 6.8790 -1.5027 -0.0082 35 1 7.3375 -3.0939 0.6455 36 1 8.0518 -1.2551 2.1578 37 1 6.8426 -2.3028 2.9376 38 1 6.3340 -0.3300 4.4345 39 1 7.5521 0.5935 3.5227 40 1 5.8864 1.2067 3.6556 41 1 4.1012 0.0626 2.5544 42 1 4.5650 -1.5430 3.1663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695533009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:47 Heat of formation + Delta-G solvation = -9.255912 kcal Electronic energy + Delta-G solvation = -19078.769396 eV Core-core repulsion = 16478.979866 eV Total energy + Delta-G solvation = -2599.789530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08852 -38.02429 -34.79202 -34.16271 -32.62908 -30.44570 -27.86187 -27.67182 -27.20624 -24.89371 -23.58536 -22.18268 -21.26394 -20.41145 -18.08917 -16.93158 -16.48639 -16.11195 -15.99150 -15.50374 -15.33493 -15.09350 -14.52568 -14.13801 -14.00042 -13.64239 -13.24598 -13.20092 -13.12426 -12.94753 -12.83738 -12.80218 -12.40268 -12.29084 -12.24331 -11.87997 -11.71245 -11.66899 -11.38552 -11.27746 -11.05280 -10.96273 -10.41007 -9.23834 -8.41239 -7.72903 -5.33719 1.37514 1.43503 1.50147 2.51442 3.09889 3.32567 3.66827 4.04609 4.06729 4.19013 4.29720 4.38751 4.49684 4.55965 4.62644 4.66970 4.75377 4.77617 4.82111 4.94482 4.95794 4.98670 5.04268 5.11609 5.16865 5.19658 5.20729 5.22383 5.26451 5.30388 5.51409 5.60562 5.66505 5.72312 5.80495 5.95978 6.21321 6.29090 6.57700 7.28065 7.99106 8.52600 9.21654 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.010881 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.241211 B = 2572.776649 C = 3280.641732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.154 3.846 3 C -0.139 4.139 4 N -0.592 5.592 5 C -0.226 4.226 6 H 0.049 0.951 7 C -0.029 4.029 8 N -0.916 5.916 9 Si 0.927 3.073 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.296 1.296 13 C 0.156 3.844 14 C -0.085 4.085 15 H 0.058 0.942 16 C -0.114 4.114 17 C -0.106 4.106 18 C 0.053 3.947 19 N -0.553 5.553 20 C 0.027 3.973 21 C 0.091 3.909 22 H 0.063 0.937 23 H 0.024 0.976 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.245 0.755 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.066 0.934 42 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 2.413 -4.885 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 C -0.198 4.198 4 N -0.312 5.312 5 C -0.357 4.357 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.561 5.561 9 Si 0.757 3.243 10 H -0.192 1.192 11 H -0.221 1.221 12 H -0.224 1.224 13 C 0.030 3.970 14 C -0.106 4.106 15 H 0.077 0.923 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.075 4.075 19 N -0.277 5.277 20 C -0.122 4.122 21 C -0.036 4.036 22 H 0.082 0.918 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 10.039 2.618 -5.184 11.598 hybrid contribution -0.600 -0.609 2.165 2.328 sum 9.440 2.008 -3.018 10.112 Atomic orbital electron populations 1.21971 0.97837 0.99673 0.99946 1.20617 0.92445 0.92952 0.89154 1.22007 1.00074 0.97241 1.00492 1.44059 1.54282 1.31694 1.01198 1.18886 1.38668 0.90709 0.87466 0.93297 1.25583 0.99566 0.96731 1.00698 1.70114 1.48981 1.05692 1.31352 0.85824 0.76738 0.78289 0.83492 1.19194 1.22133 1.22358 1.20831 0.87501 0.89713 0.98999 1.21614 0.96364 0.96597 0.95994 0.92323 1.21589 0.95525 0.96939 1.01155 1.21534 0.95527 1.00487 0.96793 1.22180 0.97314 0.90892 0.97105 1.62063 1.03636 1.25145 1.36886 1.22357 1.02339 0.97859 0.89602 1.21787 0.87361 0.98443 0.96031 0.91803 0.95718 0.94665 0.92525 0.94536 0.93939 0.91597 0.94514 0.92526 0.95786 0.94053 0.91177 0.91047 0.89662 0.89066 0.96551 0.97027 0.89236 0.92089 0.91528 0.99057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 9.05 71.98 0.65 -4.77 16 2 C 0.15 6.27 3.36 44.99 0.15 6.42 16 3 C -0.14 -5.00 9.08 71.98 0.65 -4.34 16 4 N -0.59 -28.15 2.23 -678.04 -1.52 -29.67 16 5 C -0.23 -11.85 6.26 84.03 0.53 -11.33 16 6 H 0.05 2.63 7.02 -2.91 -0.02 2.61 16 7 C -0.03 -1.58 4.96 84.86 0.42 -1.16 16 8 N -0.92 -53.13 11.51 21.65 0.25 -52.88 16 9 Si 0.93 44.79 29.60 68.60 2.03 46.82 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 13 C 0.16 7.19 4.77 86.38 0.41 7.60 16 14 C -0.08 -3.30 2.56 -10.74 -0.03 -3.33 16 15 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.11 -3.69 5.29 30.68 0.16 -3.52 16 17 C -0.11 -2.79 6.09 30.65 0.19 -2.60 16 18 C 0.05 1.50 5.46 86.32 0.47 1.97 16 19 N -0.55 -18.74 4.91 -922.59 -4.53 -23.27 16 20 C 0.03 0.80 9.59 127.69 1.22 2.02 16 21 C 0.09 3.77 4.28 86.32 0.37 4.14 16 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.03 1.50 7.85 -2.39 -0.02 1.48 16 25 H 0.06 2.16 7.79 -2.39 -0.02 2.14 16 26 H 0.04 1.39 7.26 -2.38 -0.02 1.38 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.06 3.05 5.58 -2.39 -0.01 3.03 16 31 H 0.02 1.07 7.91 -2.39 -0.02 1.05 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 37 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.07 3.11 6.39 -2.39 -0.02 3.09 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: -1.00 -59.08 320.46 2.37 -56.71 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.94 Total: 11.18 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.20 Total: -8.89 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -5.80 Total: -105.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -59.08 2.37 -56.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695533009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.456 kcal (2) G-P(sol) polarization free energy of solvation -59.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds