Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47216 * 2 1 4 4 N 1.46904 * 109.47019 * 179.97438 * 3 2 1 5 5 C 1.46959 * 111.00004 * 190.00235 * 4 3 2 6 6 C 1.53056 * 109.36066 * 183.18679 * 5 4 3 7 7 N 1.46951 * 109.36826 * 301.59558 * 6 5 4 8 8 C 1.46892 * 111.00339 * 183.18911 * 7 6 5 9 9 H 1.08994 * 109.47504 * 188.35758 * 8 7 6 10 10 C 1.53001 * 109.47179 * 308.36209 * 8 7 6 11 11 C 1.53005 * 109.47110 * 68.35893 * 8 7 6 12 12 C 1.50700 * 109.46778 * 63.42300 * 11 8 7 13 13 H 1.07997 * 120.00569 * 5.04186 * 12 11 8 14 14 C 1.37883 * 119.99709 * 184.76775 * 12 11 8 15 15 N 1.31511 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99675 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47165 * 90.00147 * 16 14 12 18 18 H 1.48503 * 109.46859 * 209.99953 * 16 14 12 19 19 H 1.48491 * 109.47220 * 329.99753 * 16 14 12 20 20 C 1.46960 * 110.87791 * 59.32036 * 7 6 5 21 21 C 1.46961 * 111.00119 * 313.79850 * 4 3 2 22 22 H 1.09004 * 109.46445 * 59.99728 * 1 2 3 23 23 H 1.08990 * 109.47515 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47010 * 300.00619 * 1 2 3 25 25 H 1.09004 * 109.47010 * 239.99381 * 2 1 3 26 26 H 1.09004 * 109.46445 * 120.00272 * 2 1 3 27 27 H 1.09006 * 109.47428 * 60.00266 * 3 2 1 28 28 H 1.08994 * 109.47643 * 299.99439 * 3 2 1 29 29 H 1.09000 * 109.49167 * 63.22409 * 5 4 3 30 30 H 1.08997 * 109.48850 * 303.15322 * 5 4 3 31 31 H 1.09001 * 109.48469 * 181.63080 * 6 5 4 32 32 H 1.08999 * 109.50560 * 61.57894 * 6 5 4 33 33 H 1.08998 * 109.47014 * 59.99861 * 10 8 7 34 34 H 1.09002 * 109.47194 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.46993 * 299.99476 * 10 8 7 36 36 H 1.08995 * 109.47363 * 303.42718 * 11 8 7 37 37 H 1.09000 * 109.47043 * 183.42376 * 11 8 7 38 38 H 0.97005 * 119.99833 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.48765 * 60.65233 * 20 7 6 40 40 H 1.09007 * 109.48777 * 180.71335 * 20 7 6 41 41 H 1.08998 * 109.48839 * 296.78153 * 21 4 3 42 42 H 1.09002 * 109.48660 * 56.84039 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0357 2.7935 0.2389 6 6 5.5636 2.7650 0.1531 7 7 6.0898 1.8156 1.1436 8 6 7.5587 1.8155 1.1443 9 1 7.9217 1.0041 1.7750 10 6 8.0693 1.6185 -0.2845 11 6 8.0686 3.1516 1.6883 12 6 7.6360 3.3074 3.1235 13 1 7.1265 2.4979 3.6249 14 6 7.8959 4.4814 3.7982 15 7 8.5207 5.4654 3.1891 16 14 7.3604 4.6743 5.5774 17 1 8.4479 4.2085 6.4750 18 1 7.0683 6.1038 5.8542 19 1 6.1393 3.8641 5.8174 20 6 5.5631 0.4645 0.9054 21 6 4.0353 0.4929 0.9913 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6769 1.9563 -0.8900 29 1 3.7335 3.1321 1.2300 30 1 3.6417 3.4755 -0.5146 31 1 5.9578 3.7603 0.3581 32 1 5.8662 2.4528 -0.8465 33 1 7.7063 2.4300 -0.9152 34 1 9.1593 1.6179 -0.2840 35 1 7.7061 0.6667 -0.6721 36 1 7.6563 3.9670 1.0941 37 1 9.1569 3.1752 1.6322 38 1 8.7038 6.2912 3.6639 39 1 5.8654 0.1259 -0.0856 40 1 5.9571 -0.2175 1.6589 41 1 3.7330 0.8054 1.9908 42 1 3.6410 -0.5024 0.7862 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = -20.071845 kcal Electronic energy + Delta-G solvation = -18279.518160 eV Core-core repulsion = 15679.259616 eV Total energy + Delta-G solvation = -2600.258544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58819 -37.99162 -35.17381 -34.12472 -32.22124 -31.52190 -29.21863 -27.83146 -25.42424 -25.15165 -24.18914 -22.23989 -21.09204 -20.02310 -18.35127 -17.37010 -16.55827 -16.30186 -16.17463 -15.80013 -15.51763 -15.27372 -14.79004 -14.60811 -13.89487 -13.80040 -13.66518 -13.23152 -13.12849 -13.08222 -12.69704 -12.57522 -12.47145 -12.41839 -12.27475 -12.05856 -11.90345 -11.66490 -11.45636 -11.36241 -11.09431 -10.89580 -10.47648 -9.31664 -8.87911 -8.09676 -6.13965 1.40281 1.41111 1.52378 2.46864 2.94777 3.12231 3.28068 3.91491 4.01209 4.10840 4.14316 4.28460 4.39215 4.41274 4.46515 4.48962 4.51650 4.60024 4.65439 4.70679 4.79448 4.87085 4.92607 4.99460 5.00036 5.08685 5.10864 5.20309 5.22863 5.31334 5.33052 5.41630 5.49748 5.69657 5.89704 6.05809 6.12724 6.34129 6.46375 6.55609 6.99050 7.51262 9.02416 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.006176 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.176218 B = 4532.662227 C = 5144.292964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.054 3.946 4 N -0.541 5.541 5 C 0.066 3.934 6 C 0.065 3.935 7 N -0.534 5.534 8 C 0.094 3.906 9 H 0.064 0.936 10 C -0.171 4.171 11 C 0.037 3.963 12 C -0.496 4.496 13 H 0.054 0.946 14 C -0.003 4.003 15 N -0.940 5.940 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.056 3.944 21 C 0.060 3.940 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.021 0.979 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.064 0.936 36 H -0.002 1.002 37 H -0.010 1.010 38 H 0.258 0.742 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.023 0.977 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 -11.191 -7.745 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.266 5.266 5 C -0.063 4.063 6 C -0.063 4.063 7 N -0.258 5.258 8 C -0.014 4.014 9 H 0.083 0.917 10 C -0.230 4.230 11 C 0.000 4.000 12 C -0.535 4.535 13 H 0.072 0.928 14 C -0.199 4.199 15 N -0.582 5.582 16 Si 0.781 3.219 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.073 4.073 21 C -0.068 4.068 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.016 0.984 37 H 0.008 0.992 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.008 -11.027 -7.704 18.712 hybrid contribution 0.203 0.767 1.057 1.322 sum -12.804 -10.260 -6.648 17.703 Atomic orbital electron populations 1.21710 0.94430 1.02385 1.01964 1.21636 0.96597 0.95202 1.02568 1.22239 0.86083 0.98363 1.00664 1.62312 1.08324 1.06844 1.49107 1.22066 0.94238 0.90585 0.99388 1.22002 0.94201 0.96552 0.93533 1.62163 1.07613 1.06924 1.49148 1.21609 0.86469 0.98627 0.94676 0.91737 1.22352 1.01521 1.01288 0.97800 1.19035 0.93670 0.92125 0.95197 1.21437 1.34823 0.99536 0.97692 0.92788 1.25812 0.95939 0.95992 1.02193 1.70090 1.43985 1.05741 1.38374 0.85603 0.78711 0.76930 0.80688 1.20011 1.21213 1.19517 1.22208 0.94758 0.90342 0.99945 1.22244 0.94061 0.97538 0.93005 0.92160 0.91576 0.93056 0.90998 0.91850 0.95755 0.90109 0.96051 0.89353 0.92689 0.93908 0.93105 0.92375 0.91745 0.98409 0.99157 0.93293 0.94013 0.90564 0.95876 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.15 5.20 30.59 0.16 -1.99 16 3 C 0.05 1.19 5.28 86.30 0.46 1.64 16 4 N -0.54 -14.77 4.86 -895.72 -4.35 -19.12 16 5 C 0.07 2.08 5.58 86.31 0.48 2.57 16 6 C 0.07 2.41 4.70 86.31 0.41 2.82 16 7 N -0.53 -20.82 4.32 -870.49 -3.76 -24.58 16 8 C 0.09 3.93 2.26 44.92 0.10 4.03 16 9 H 0.06 2.69 7.98 -2.39 -0.02 2.67 16 10 C -0.17 -5.89 8.40 71.98 0.60 -5.29 16 11 C 0.04 1.96 4.39 29.85 0.13 2.09 16 12 C -0.50 -28.63 8.80 25.60 0.23 -28.41 16 13 H 0.05 3.10 7.75 -2.91 -0.02 3.07 16 14 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 15 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 16 Si 0.95 46.09 29.54 68.60 2.03 48.12 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 20 C 0.06 1.72 5.36 86.31 0.46 2.19 16 21 C 0.06 1.63 4.93 86.31 0.43 2.06 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 1.14 6.26 -2.39 -0.01 1.13 16 27 H 0.02 0.58 8.08 -2.38 -0.02 0.56 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 2.38 6.36 -2.39 -0.02 2.37 16 32 H 0.04 1.49 6.40 -2.39 -0.02 1.47 16 33 H 0.05 1.78 6.39 -2.39 -0.02 1.76 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.91 6.84 -2.39 -0.02 1.90 16 36 H 0.00 -0.14 6.43 -2.39 -0.02 -0.15 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 39 H 0.04 1.23 6.84 -2.38 -0.02 1.21 16 40 H 0.08 2.27 8.05 -2.38 -0.02 2.26 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.10 2.28 5.99 -2.39 -0.01 2.26 16 Total: -1.00 -64.42 316.69 -0.22 -64.64 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.95 Total: 8.29 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.63 Total: -19.41 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -7.82 Total: -101.64 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -64.42 -0.22 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.566 kcal (2) G-P(sol) polarization free energy of solvation -64.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds