Wall clock time and date at job start Mon Mar 30 2020 04:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46586 * 2 1 4 4 N 1.46905 * 109.46720 * 185.76993 * 3 2 1 5 5 C 1.46902 * 110.99496 * 163.17653 * 4 3 2 6 6 H 1.09002 * 109.46390 * 173.92403 * 5 4 3 7 7 C 1.52994 * 109.47544 * 53.92398 * 5 4 3 8 8 C 1.52998 * 109.47225 * 293.91463 * 5 4 3 9 9 C 1.50707 * 109.47429 * 296.82823 * 8 5 4 10 10 H 1.08001 * 119.99606 * 359.97438 * 9 8 5 11 11 C 1.37877 * 119.99775 * 179.97438 * 9 8 5 12 12 N 1.31509 * 120.00325 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99591 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47325 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46990 * 119.99801 * 13 11 9 16 16 H 1.48503 * 109.47301 * 240.00013 * 13 11 9 17 17 C 1.46896 * 111.00172 * 287.12617 * 4 3 2 18 18 H 1.08999 * 110.29123 * 311.39244 * 17 4 3 19 19 C 1.54265 * 110.32380 * 73.51653 * 17 4 3 20 20 C 1.54376 * 105.05876 * 118.89439 * 19 17 4 21 21 N 1.48557 * 104.59806 * 23.85797 * 20 19 17 22 22 C 1.48726 * 104.28637 * 320.56960 * 21 20 19 23 23 H 1.08990 * 109.47398 * 299.99845 * 1 2 3 24 24 H 1.09002 * 109.46987 * 59.99925 * 1 2 3 25 25 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47348 * 240.00354 * 2 1 3 27 27 H 1.08995 * 109.47013 * 119.99660 * 2 1 3 28 28 H 1.09002 * 109.46898 * 65.77470 * 3 2 1 29 29 H 1.08994 * 109.47759 * 305.77365 * 3 2 1 30 30 H 1.08998 * 109.46573 * 299.99563 * 7 5 4 31 31 H 1.09004 * 109.47308 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.47687 * 59.99551 * 7 5 4 33 33 H 1.09006 * 109.46820 * 56.82146 * 8 5 4 34 34 H 1.08997 * 109.47600 * 176.81976 * 8 5 4 35 35 H 0.96998 * 120.00351 * 180.02562 * 12 11 9 36 36 H 1.08994 * 110.32468 * 237.79220 * 19 17 4 37 37 H 1.08997 * 110.32188 * 0.02562 * 19 17 4 38 38 H 1.09001 * 110.40908 * 142.63418 * 20 19 17 39 39 H 1.09005 * 110.41466 * 265.07290 * 20 19 17 40 40 H 1.00898 * 110.99995 * 200.96095 * 21 20 19 41 41 H 1.09002 * 110.38743 * 280.64319 * 22 21 20 42 42 H 1.09000 * 110.51128 * 158.14251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5024 1.4449 -0.1392 5 6 3.9908 2.7711 -0.5401 6 1 5.0808 2.7747 -0.5313 7 6 3.4694 3.8243 0.4396 8 6 3.4912 3.0940 -1.9497 9 6 4.0681 2.1021 -2.9267 10 1 4.7257 1.3199 -2.5771 11 6 3.7564 2.1933 -4.2667 12 7 2.9553 3.1454 -4.6922 13 14 4.4721 0.9642 -5.4777 14 1 5.3364 -0.0005 -4.7514 15 1 3.3689 0.2313 -6.1494 16 1 5.2795 1.6843 -6.4950 17 6 4.1501 0.9983 1.1012 18 1 3.7329 1.5282 1.9575 19 6 3.9773 -0.5245 1.2776 20 6 5.4128 -1.0924 1.2885 21 7 6.2635 0.0482 1.7155 22 6 5.6751 1.2247 1.0216 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8935 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7634 1.9256 0.9372 29 1 1.5947 1.9854 -0.8337 30 1 2.3794 3.8206 0.4307 31 1 3.8314 4.8084 0.1419 32 1 3.8253 3.5943 1.4438 33 1 2.4030 3.0348 -1.9719 34 1 3.8060 4.1005 -2.2252 35 1 2.7357 3.2093 -5.6348 36 1 3.4770 -0.7420 2.2212 37 1 3.4123 -0.9405 0.4435 38 1 5.4915 -1.9131 2.0015 39 1 5.6972 -1.4262 0.2905 40 1 7.2232 -0.0928 1.4380 41 1 6.0012 1.2546 -0.0181 42 1 5.9497 2.1469 1.5337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695825061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:25 Heat of formation + Delta-G solvation = 4.703798 kcal Electronic energy + Delta-G solvation = -18822.868325 eV Core-core repulsion = 16223.684133 eV Total energy + Delta-G solvation = -2599.184192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.35377 -36.35270 -33.82765 -32.46701 -30.57651 -28.90011 -27.73271 -27.23215 -24.73540 -23.05210 -21.53854 -21.16967 -19.84547 -18.28394 -16.48043 -16.12277 -15.83365 -14.64665 -14.55532 -14.39286 -14.07968 -13.34300 -12.98313 -12.81305 -12.50114 -12.32765 -12.07024 -11.78367 -11.59927 -11.58826 -11.25766 -11.09188 -10.92229 -10.82539 -10.61751 -10.54825 -10.42466 -10.16192 -9.87920 -9.71749 -9.13917 -8.95206 -8.42325 -8.25108 -7.46370 -5.89037 -3.86355 3.36447 3.44219 3.48825 4.30830 4.55469 4.74302 4.93951 5.07478 5.35818 5.42729 5.47944 5.50323 5.60525 5.73078 5.81176 5.84244 5.90686 5.91660 5.95657 6.09809 6.13628 6.19104 6.21576 6.24904 6.26856 6.37472 6.43908 6.50912 6.62883 6.75444 6.78597 6.87543 7.01297 7.41333 7.57856 7.72365 7.95390 8.06317 8.13028 8.58711 9.19562 9.75128 11.23023 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.008563 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.506999 B = 3268.937878 C = 3575.715288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.059 3.941 4 N -0.504 5.504 5 C 0.081 3.919 6 H 0.073 0.927 7 C -0.183 4.183 8 C 0.030 3.970 9 C -0.485 4.485 10 H 0.059 0.941 11 C 0.050 3.950 12 N -0.903 5.903 13 Si 0.887 3.113 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.288 1.288 17 C 0.081 3.919 18 H 0.040 0.960 19 C -0.126 4.126 20 C 0.037 3.963 21 N -0.671 5.671 22 C 0.038 3.962 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.256 0.744 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.332 0.668 41 H 0.062 0.938 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 -5.446 11.802 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.069 4.069 4 N -0.228 5.228 5 C -0.027 4.027 6 H 0.091 0.909 7 C -0.242 4.242 8 C -0.007 4.007 9 C -0.524 4.524 10 H 0.078 0.922 11 C -0.149 4.149 12 N -0.544 5.544 13 Si 0.716 3.284 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.214 1.214 17 C -0.029 4.029 18 H 0.058 0.942 19 C -0.164 4.164 20 C -0.093 4.093 21 N -0.299 5.299 22 C -0.091 4.091 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.334 -5.604 11.954 13.207 hybrid contribution 0.377 -0.126 -1.092 1.162 sum 0.711 -5.730 10.862 12.302 Atomic orbital electron populations 1.21757 0.96661 1.00924 1.01483 1.21897 0.94574 0.97731 1.02468 1.22129 0.88398 0.96450 0.99956 1.62280 1.04685 1.27474 1.28337 1.21998 0.99198 0.84608 0.96856 0.90915 1.22533 1.01412 1.00977 0.99269 1.19215 0.96593 0.96551 0.88363 1.21168 1.27437 1.12556 0.91228 0.92241 1.24995 0.95695 0.95683 0.98519 1.69967 1.36750 1.32921 1.14803 0.86614 0.78863 0.81570 0.81369 1.19904 1.21352 1.21444 1.22296 0.93578 0.95186 0.91791 0.94204 1.22760 0.96164 0.95461 1.01989 1.22898 0.93728 0.94014 0.98634 1.63742 1.05635 1.03406 1.57153 1.23101 0.94235 0.93823 0.97952 0.93499 0.92581 0.93239 0.90867 0.91732 0.96157 0.89566 0.92968 0.92658 0.94212 0.96278 0.96439 0.93415 0.92056 0.88701 0.91007 0.93930 0.85335 0.91976 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.13 -1.98 4.57 -26.73 -0.12 -2.10 16 3 C 0.06 1.02 3.67 -3.82 -0.01 1.01 16 4 N -0.50 -9.32 3.96 -217.07 -0.86 -10.17 16 5 C 0.08 1.62 1.94 -67.72 -0.13 1.49 16 6 H 0.07 1.47 5.82 -51.93 -0.30 1.17 16 7 C -0.18 -3.16 8.52 37.15 0.32 -2.85 16 8 C 0.03 0.74 4.37 -27.88 -0.12 0.62 16 9 C -0.49 -13.37 8.79 -34.44 -0.30 -13.67 16 10 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 11 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 12 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 13 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 C 0.08 1.29 2.26 -66.33 -0.15 1.14 16 18 H 0.04 0.65 7.16 -51.93 -0.37 0.27 16 19 C -0.13 -1.79 4.86 -25.35 -0.12 -1.92 16 20 C 0.04 0.49 7.47 -2.19 -0.02 0.48 16 21 N -0.67 -9.22 7.62 -109.53 -0.84 -10.05 16 22 C 0.04 0.59 5.67 -2.09 -0.01 0.58 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16 27 H 0.06 0.90 5.13 -51.93 -0.27 0.63 16 28 H 0.02 0.34 7.02 -51.93 -0.36 -0.03 16 29 H 0.09 1.74 5.88 -51.93 -0.31 1.44 16 30 H 0.05 0.90 6.71 -51.93 -0.35 0.55 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.62 7.06 -51.93 -0.37 0.25 16 33 H 0.02 0.51 6.16 -51.93 -0.32 0.19 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 0.80 7.99 -51.93 -0.41 0.39 16 37 H 0.09 1.43 5.17 -51.93 -0.27 1.16 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.33 4.01 8.92 -39.29 -0.35 3.66 16 41 H 0.06 1.08 6.94 -51.93 -0.36 0.72 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -29.08 312.28 -9.05 -38.14 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.37 Total: 2.30 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.41 Total: -15.54 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.96 Total: -46.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.08 -9.05 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695825061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.840 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds