Wall clock time and date at job start Mon Mar 30 2020 04:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46586 * 2 1 4 4 N 1.46905 * 109.46720 * 185.76993 * 3 2 1 5 5 C 1.46902 * 110.99496 * 163.17653 * 4 3 2 6 6 H 1.09002 * 109.46390 * 173.92403 * 5 4 3 7 7 C 1.52994 * 109.47544 * 53.92398 * 5 4 3 8 8 C 1.52998 * 109.47225 * 293.91463 * 5 4 3 9 9 C 1.50707 * 109.47429 * 296.82823 * 8 5 4 10 10 H 1.08001 * 119.99606 * 359.97438 * 9 8 5 11 11 C 1.37877 * 119.99775 * 179.97438 * 9 8 5 12 12 N 1.31509 * 120.00325 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99591 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47325 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46990 * 119.99801 * 13 11 9 16 16 H 1.48503 * 109.47301 * 240.00013 * 13 11 9 17 17 C 1.46896 * 111.00172 * 287.12617 * 4 3 2 18 18 H 1.08999 * 110.29123 * 311.39244 * 17 4 3 19 19 C 1.54265 * 110.32380 * 73.51653 * 17 4 3 20 20 C 1.54376 * 105.05876 * 118.89439 * 19 17 4 21 21 N 1.48557 * 104.59806 * 23.85797 * 20 19 17 22 22 C 1.48726 * 104.28637 * 320.56960 * 21 20 19 23 23 H 1.08990 * 109.47398 * 299.99845 * 1 2 3 24 24 H 1.09002 * 109.46987 * 59.99925 * 1 2 3 25 25 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47348 * 240.00354 * 2 1 3 27 27 H 1.08995 * 109.47013 * 119.99660 * 2 1 3 28 28 H 1.09002 * 109.46898 * 65.77470 * 3 2 1 29 29 H 1.08994 * 109.47759 * 305.77365 * 3 2 1 30 30 H 1.08998 * 109.46573 * 299.99563 * 7 5 4 31 31 H 1.09004 * 109.47308 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.47687 * 59.99551 * 7 5 4 33 33 H 1.09006 * 109.46820 * 56.82146 * 8 5 4 34 34 H 1.08997 * 109.47600 * 176.81976 * 8 5 4 35 35 H 0.96998 * 120.00351 * 180.02562 * 12 11 9 36 36 H 1.08994 * 110.32468 * 237.79220 * 19 17 4 37 37 H 1.08997 * 110.32188 * 0.02562 * 19 17 4 38 38 H 1.09001 * 110.40908 * 142.63418 * 20 19 17 39 39 H 1.09005 * 110.41466 * 265.07290 * 20 19 17 40 40 H 1.00898 * 110.99995 * 200.96095 * 21 20 19 41 41 H 1.09002 * 110.38743 * 280.64319 * 22 21 20 42 42 H 1.09000 * 110.51128 * 158.14251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5024 1.4449 -0.1392 5 6 3.9908 2.7711 -0.5401 6 1 5.0808 2.7747 -0.5313 7 6 3.4694 3.8243 0.4396 8 6 3.4912 3.0940 -1.9497 9 6 4.0681 2.1021 -2.9267 10 1 4.7257 1.3199 -2.5771 11 6 3.7564 2.1933 -4.2667 12 7 2.9553 3.1454 -4.6922 13 14 4.4721 0.9642 -5.4777 14 1 5.3364 -0.0005 -4.7514 15 1 3.3689 0.2313 -6.1494 16 1 5.2795 1.6843 -6.4950 17 6 4.1501 0.9983 1.1012 18 1 3.7329 1.5282 1.9575 19 6 3.9773 -0.5245 1.2776 20 6 5.4128 -1.0924 1.2885 21 7 6.2635 0.0482 1.7155 22 6 5.6751 1.2247 1.0216 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8935 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7634 1.9256 0.9372 29 1 1.5947 1.9854 -0.8337 30 1 2.3794 3.8206 0.4307 31 1 3.8314 4.8084 0.1419 32 1 3.8253 3.5943 1.4438 33 1 2.4030 3.0348 -1.9719 34 1 3.8060 4.1005 -2.2252 35 1 2.7357 3.2093 -5.6348 36 1 3.4770 -0.7420 2.2212 37 1 3.4123 -0.9405 0.4435 38 1 5.4915 -1.9131 2.0015 39 1 5.6972 -1.4262 0.2905 40 1 7.2232 -0.0928 1.4380 41 1 6.0012 1.2546 -0.0181 42 1 5.9497 2.1469 1.5337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695825061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:24 Heat of formation + Delta-G solvation = -15.025334 kcal Electronic energy + Delta-G solvation = -18823.723844 eV Core-core repulsion = 16223.684133 eV Total energy + Delta-G solvation = -2600.039711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69519 -37.67927 -35.39959 -34.34253 -32.02699 -30.17799 -29.11467 -28.93502 -26.08132 -24.99278 -22.76111 -22.55732 -21.12790 -19.77712 -18.33581 -17.69349 -17.09377 -16.50952 -15.97743 -15.78064 -15.46755 -14.61081 -14.47057 -14.35050 -13.80604 -13.71335 -13.59218 -13.42261 -13.12915 -12.90898 -12.72428 -12.59486 -12.44377 -12.36225 -12.23641 -12.06722 -11.91899 -11.50730 -11.29592 -11.26118 -11.05490 -10.83413 -10.46100 -9.54913 -8.89882 -8.09596 -6.13422 1.38791 1.40212 1.52324 2.46266 2.99742 3.25951 3.54470 3.75405 3.91100 4.10413 4.25770 4.26106 4.27543 4.40818 4.47874 4.55565 4.58689 4.64011 4.75301 4.81228 4.88759 4.94995 4.96246 5.05241 5.06840 5.14892 5.17793 5.21381 5.24601 5.31650 5.42806 5.47225 5.56219 5.64297 5.78986 5.91748 6.32752 6.39077 6.53208 6.59756 7.00375 7.51965 9.02704 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.008563 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.506999 B = 3268.937878 C = 3575.715288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.062 3.938 4 N -0.520 5.520 5 C 0.090 3.910 6 H 0.070 0.930 7 C -0.173 4.173 8 C 0.037 3.963 9 C -0.489 4.489 10 H 0.056 0.944 11 C -0.005 4.005 12 N -0.940 5.940 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.080 3.920 18 H 0.046 0.954 19 C -0.124 4.124 20 C 0.038 3.962 21 N -0.666 5.666 22 C 0.042 3.958 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.062 0.938 33 H -0.004 1.004 34 H -0.011 1.011 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.343 0.657 41 H 0.037 0.963 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -7.031 13.513 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.065 4.065 4 N -0.244 5.244 5 C -0.018 4.018 6 H 0.088 0.912 7 C -0.232 4.232 8 C 0.000 4.000 9 C -0.528 4.528 10 H 0.074 0.926 11 C -0.201 4.201 12 N -0.582 5.582 13 Si 0.779 3.221 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.028 4.028 18 H 0.064 0.936 19 C -0.162 4.162 20 C -0.092 4.092 21 N -0.295 5.295 22 C -0.088 4.088 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.014 0.986 34 H 0.007 0.993 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.051 0.949 40 H 0.158 0.842 41 H 0.055 0.945 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.850 -7.200 13.678 15.481 hybrid contribution 0.225 0.376 -1.598 1.657 sum 1.076 -6.824 12.080 13.916 Atomic orbital electron populations 1.21731 0.95189 1.02152 1.01380 1.21841 0.95822 0.95995 1.02297 1.22071 0.87803 0.97655 0.99015 1.62203 1.05351 1.26436 1.30414 1.21681 0.98855 0.86631 0.94615 0.91203 1.22399 1.01144 1.00028 0.99613 1.19063 0.95013 0.94512 0.91457 1.21439 1.26879 1.12566 0.91916 0.92601 1.25811 0.96195 0.97518 1.00543 1.70094 1.38211 1.34735 1.15200 0.85582 0.78182 0.79339 0.79005 1.19044 1.21043 1.20922 1.22366 0.93595 0.96455 0.90434 0.93615 1.22754 0.96940 0.93926 1.02572 1.22940 0.92966 0.94395 0.98851 1.63761 1.06340 1.02886 1.56535 1.23001 0.94029 0.94991 0.96749 0.91981 0.94325 0.91336 0.93234 0.89591 0.94707 0.93207 0.93236 0.92589 0.91860 0.98574 0.99261 0.93380 0.90098 0.89629 0.88700 0.94908 0.84196 0.94479 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.62 4.57 30.60 0.14 -3.48 16 3 C 0.06 2.17 3.67 86.30 0.32 2.49 16 4 N -0.52 -19.05 3.96 -840.69 -3.33 -22.37 16 5 C 0.09 3.64 1.94 44.91 0.09 3.73 16 6 H 0.07 2.85 5.82 -2.39 -0.01 2.83 16 7 C -0.17 -5.86 8.52 71.98 0.61 -5.25 16 8 C 0.04 1.91 4.37 29.85 0.13 2.04 16 9 C -0.49 -27.64 8.79 25.60 0.23 -27.41 16 10 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 11 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 12 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 13 Si 0.95 45.65 29.54 68.60 2.03 47.68 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 C 0.08 2.41 2.26 45.81 0.10 2.52 16 18 H 0.05 1.34 7.16 -2.39 -0.02 1.33 16 19 C -0.12 -3.21 4.86 31.49 0.15 -3.06 16 20 C 0.04 0.91 7.47 86.45 0.65 1.56 16 21 N -0.67 -16.62 7.62 -500.44 -3.82 -20.44 16 22 C 0.04 1.22 5.67 86.42 0.49 1.71 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.70 7.92 -2.39 -0.02 1.68 16 27 H 0.09 2.18 5.13 -2.39 -0.01 2.17 16 28 H 0.03 1.10 7.02 -2.39 -0.02 1.08 16 29 H 0.05 2.09 5.88 -2.39 -0.01 2.08 16 30 H 0.05 1.69 6.71 -2.39 -0.02 1.67 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.84 7.06 -2.39 -0.02 1.83 16 33 H 0.00 -0.22 6.16 -2.38 -0.01 -0.24 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.08 1.80 7.99 -2.39 -0.02 1.78 16 37 H 0.09 2.41 5.17 -2.39 -0.01 2.40 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.34 7.48 8.92 -89.70 -0.80 6.68 16 41 H 0.04 1.27 6.94 -2.39 -0.02 1.25 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -63.07 312.28 -0.57 -63.64 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.18 Total: 17.04 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.08 Total: -28.02 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -6.86 Total: -100.34 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -63.07 -0.57 -63.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695825061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.618 kcal (2) G-P(sol) polarization free energy of solvation -63.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds