Wall clock time and date at job start Mon Mar 30 2020 04:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47122 * 2 1 4 4 N 1.46906 * 109.47548 * 186.80533 * 3 2 1 5 5 C 1.46892 * 111.00097 * 172.08105 * 4 3 2 6 6 H 1.09004 * 109.47213 * 309.64908 * 5 4 3 7 7 C 1.52995 * 109.47464 * 69.65489 * 5 4 3 8 8 C 1.53002 * 109.46721 * 189.65370 * 5 4 3 9 9 C 1.50699 * 109.47449 * 61.57623 * 8 5 4 10 10 H 1.07997 * 119.99834 * 0.02562 * 9 8 5 11 11 C 1.37872 * 119.99988 * 179.97438 * 9 8 5 12 12 N 1.31521 * 120.00229 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00001 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47097 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47167 * 120.00500 * 13 11 9 16 16 H 1.48496 * 109.47239 * 240.00420 * 13 11 9 17 17 C 1.46897 * 110.99662 * 296.03850 * 4 3 2 18 18 H 1.09002 * 110.28553 * 200.39021 * 17 4 3 19 19 C 1.54261 * 110.32282 * 322.51654 * 17 4 3 20 20 C 1.54380 * 105.06047 * 118.90368 * 19 17 4 21 21 N 1.48565 * 104.59612 * 23.85067 * 20 19 17 22 22 C 1.48724 * 104.28456 * 320.57246 * 21 20 19 23 23 H 1.08995 * 109.46859 * 299.99788 * 1 2 3 24 24 H 1.09000 * 109.46985 * 60.00306 * 1 2 3 25 25 H 1.09002 * 109.46591 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47248 * 239.99637 * 2 1 3 27 27 H 1.09000 * 109.46985 * 119.99694 * 2 1 3 28 28 H 1.08996 * 109.47303 * 306.80713 * 3 2 1 29 29 H 1.08998 * 109.47348 * 66.80660 * 3 2 1 30 30 H 1.09002 * 109.46736 * 299.99827 * 7 5 4 31 31 H 1.09004 * 109.47381 * 59.99521 * 7 5 4 32 32 H 1.08995 * 109.47409 * 180.02562 * 7 5 4 33 33 H 1.09003 * 109.46870 * 181.58091 * 8 5 4 34 34 H 1.09001 * 109.47150 * 301.57288 * 8 5 4 35 35 H 0.96999 * 119.99692 * 180.02562 * 12 11 9 36 36 H 1.09007 * 110.32492 * 237.79414 * 19 17 4 37 37 H 1.08994 * 110.33054 * 0.02562 * 19 17 4 38 38 H 1.08993 * 110.41601 * 142.63049 * 20 19 17 39 39 H 1.09000 * 110.40979 * 265.07494 * 20 19 17 40 40 H 1.00896 * 111.00122 * 80.07395 * 21 20 19 41 41 H 1.08991 * 110.39615 * 280.64363 * 22 21 20 42 42 H 1.09005 * 110.50284 * 158.14168 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4999 1.4458 -0.1641 5 6 4.0048 2.8117 -0.3569 6 1 3.4304 3.3040 -1.1416 7 6 3.8626 3.5970 0.9484 8 6 5.4794 2.7578 -0.7616 9 6 5.6153 2.0177 -2.0672 10 1 4.7377 1.6253 -2.5594 11 6 6.8599 1.8423 -2.6339 12 7 7.9286 2.3206 -2.0347 13 14 7.0285 0.9242 -4.2520 14 1 5.6867 0.4898 -4.7167 15 1 7.6379 1.8196 -5.2679 16 1 7.8949 -0.2660 -4.0578 17 6 4.1593 0.7968 0.9768 18 1 5.2021 1.1083 1.0379 19 6 3.4206 1.1377 2.2875 20 6 2.9399 -0.2206 2.8420 21 7 3.8631 -1.2179 2.2417 22 6 4.0651 -0.7388 0.8483 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5807 1.9902 -0.8228 29 1 1.7796 1.9199 0.9446 30 1 2.8120 3.6353 1.2367 31 1 4.4369 3.1046 1.7332 32 1 4.2368 4.6106 0.8052 33 1 5.8616 3.7721 -0.8773 34 1 6.0493 2.2407 0.0103 35 1 8.8041 2.1975 -2.4337 36 1 4.1012 1.6149 2.9926 37 1 2.5685 1.7862 2.0842 38 1 3.0179 -0.2365 3.9290 39 1 1.9139 -0.4167 2.5306 40 1 4.7383 -1.2480 2.7427 41 1 3.2158 -1.0165 0.2242 42 1 4.9895 -1.1431 0.4358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695825067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:31 Heat of formation + Delta-G solvation = 25.752092 kcal Electronic energy + Delta-G solvation = -19059.000230 eV Core-core repulsion = 16460.728761 eV Total energy + Delta-G solvation = -2598.271469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08428 -36.05561 -33.95916 -32.45558 -30.16045 -29.10183 -27.72854 -27.13270 -25.00959 -23.06822 -22.05637 -20.84263 -19.84348 -18.36296 -16.74794 -16.18633 -15.92094 -15.13936 -14.46986 -13.85889 -13.78692 -13.54324 -13.09107 -12.92955 -12.52662 -12.27326 -11.90757 -11.82002 -11.73692 -11.56977 -11.46379 -11.10140 -10.99529 -10.89664 -10.56109 -10.51924 -10.32071 -10.10072 -9.79937 -9.65220 -9.15984 -8.94573 -8.43279 -8.25355 -7.44158 -5.88681 -3.86091 3.38359 3.46086 3.51837 4.40193 4.57053 4.62990 5.08375 5.13425 5.21910 5.33982 5.37594 5.48459 5.51055 5.62181 5.71627 5.79478 5.80725 5.87669 5.95321 5.96635 6.02700 6.06817 6.15934 6.23347 6.29994 6.36360 6.49623 6.61868 6.63015 6.64314 6.70755 6.86627 6.98648 7.51379 7.58238 7.69371 7.93977 8.04602 8.13219 8.59037 9.20781 9.75860 11.23384 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.007691 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.062615 B = 3639.805601 C = 3722.721735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.045 3.955 4 N -0.497 5.497 5 C 0.085 3.915 6 H 0.068 0.932 7 C -0.184 4.184 8 C 0.031 3.969 9 C -0.486 4.486 10 H 0.062 0.938 11 C 0.049 3.951 12 N -0.905 5.905 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.288 1.288 16 H -0.287 1.287 17 C 0.059 3.941 18 H 0.093 0.907 19 C -0.201 4.201 20 C 0.036 3.964 21 N -0.672 5.672 22 C 0.026 3.974 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.332 0.668 41 H 0.106 0.894 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.406 -3.007 8.467 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.083 4.083 4 N -0.219 5.219 5 C -0.023 4.023 6 H 0.086 0.914 7 C -0.243 4.243 8 C -0.006 4.006 9 C -0.525 4.525 10 H 0.081 0.919 11 C -0.150 4.150 12 N -0.546 5.546 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.215 1.215 16 H -0.214 1.214 17 C -0.052 4.052 18 H 0.111 0.889 19 C -0.241 4.241 20 C -0.093 4.093 21 N -0.298 5.298 22 C -0.103 4.103 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.146 0.854 41 H 0.124 0.876 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.603 -3.836 7.858 14.529 hybrid contribution 0.707 0.985 -0.041 1.214 sum -10.896 -2.851 7.817 13.710 Atomic orbital electron populations 1.21763 0.96670 1.01121 1.01187 1.22218 0.94544 0.97637 1.03778 1.22332 0.89769 0.96610 0.99590 1.62288 1.02372 1.18937 1.38276 1.21925 1.00477 0.85834 0.94076 0.91351 1.22712 0.99765 1.01319 1.00532 1.19208 0.87657 0.96959 0.96813 1.21205 0.92615 1.33391 1.05281 0.91939 1.25011 0.96180 0.96300 0.97473 1.69978 0.98164 1.47187 1.39288 0.86587 0.77973 0.79551 0.84185 1.19735 1.21467 1.21353 1.23026 0.99378 0.95530 0.87258 0.88920 1.23898 1.01907 0.99156 0.99108 1.23068 0.98136 0.89843 0.98284 1.63474 1.16188 1.46161 1.03929 1.23681 1.03706 0.92659 0.90251 0.93404 0.93061 0.93008 0.91008 0.89401 0.91702 0.94608 0.94243 0.92564 0.92900 0.96462 0.96524 0.93427 0.92124 0.89600 0.91796 0.90216 0.85362 0.87646 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.14 -1.97 4.27 -26.73 -0.11 -2.09 16 3 C 0.04 0.68 4.16 -3.82 -0.02 0.67 16 4 N -0.50 -9.11 4.10 -217.08 -0.89 -10.00 16 5 C 0.08 1.70 2.29 -67.72 -0.15 1.54 16 6 H 0.07 1.41 7.97 -51.93 -0.41 0.99 16 7 C -0.18 -3.12 7.73 37.15 0.29 -2.84 16 8 C 0.03 0.77 4.36 -27.88 -0.12 0.65 16 9 C -0.49 -13.50 8.76 -34.44 -0.30 -13.80 16 10 H 0.06 1.75 7.71 -52.49 -0.40 1.34 16 11 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 12 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 13 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.06 1.00 2.37 -66.33 -0.16 0.85 16 18 H 0.09 1.87 5.73 -51.93 -0.30 1.57 16 19 C -0.20 -2.80 4.17 -25.35 -0.11 -2.90 16 20 C 0.04 0.46 6.79 -2.18 -0.01 0.44 16 21 N -0.67 -9.23 7.60 -109.53 -0.83 -10.06 16 22 C 0.03 0.42 6.49 -2.09 -0.01 0.41 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.09 7.46 -51.93 -0.39 0.70 16 27 H 0.09 1.20 2.52 -51.93 -0.13 1.07 16 28 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 29 H 0.04 0.52 4.33 -51.93 -0.23 0.29 16 30 H 0.04 0.59 6.37 -51.93 -0.33 0.26 16 31 H 0.06 0.95 5.42 -51.93 -0.28 0.67 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.44 6.18 -51.93 -0.32 0.12 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 0.84 7.48 -51.92 -0.39 0.45 16 37 H 0.09 1.19 3.81 -51.93 -0.20 1.00 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.98 6.30 -51.93 -0.33 0.65 16 40 H 0.33 4.27 8.92 -39.29 -0.35 3.92 16 41 H 0.11 1.70 4.04 -51.93 -0.21 1.49 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -28.95 300.13 -8.70 -37.65 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.77 Total: 4.38 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.44 Total: -17.08 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.99 Total: -46.55 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.95 -8.70 -37.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695825067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.398 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds