Wall clock time and date at job start Mon Mar 30 2020 04:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47122 * 2 1 4 4 N 1.46906 * 109.47548 * 186.80533 * 3 2 1 5 5 C 1.46892 * 111.00097 * 172.08105 * 4 3 2 6 6 H 1.09004 * 109.47213 * 309.64908 * 5 4 3 7 7 C 1.52995 * 109.47464 * 69.65489 * 5 4 3 8 8 C 1.53002 * 109.46721 * 189.65370 * 5 4 3 9 9 C 1.50699 * 109.47449 * 61.57623 * 8 5 4 10 10 H 1.07997 * 119.99834 * 0.02562 * 9 8 5 11 11 C 1.37872 * 119.99988 * 179.97438 * 9 8 5 12 12 N 1.31521 * 120.00229 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00001 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47097 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47167 * 120.00500 * 13 11 9 16 16 H 1.48496 * 109.47239 * 240.00420 * 13 11 9 17 17 C 1.46897 * 110.99662 * 296.03850 * 4 3 2 18 18 H 1.09002 * 110.28553 * 200.39021 * 17 4 3 19 19 C 1.54261 * 110.32282 * 322.51654 * 17 4 3 20 20 C 1.54380 * 105.06047 * 118.90368 * 19 17 4 21 21 N 1.48565 * 104.59612 * 23.85067 * 20 19 17 22 22 C 1.48724 * 104.28456 * 320.57246 * 21 20 19 23 23 H 1.08995 * 109.46859 * 299.99788 * 1 2 3 24 24 H 1.09000 * 109.46985 * 60.00306 * 1 2 3 25 25 H 1.09002 * 109.46591 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47248 * 239.99637 * 2 1 3 27 27 H 1.09000 * 109.46985 * 119.99694 * 2 1 3 28 28 H 1.08996 * 109.47303 * 306.80713 * 3 2 1 29 29 H 1.08998 * 109.47348 * 66.80660 * 3 2 1 30 30 H 1.09002 * 109.46736 * 299.99827 * 7 5 4 31 31 H 1.09004 * 109.47381 * 59.99521 * 7 5 4 32 32 H 1.08995 * 109.47409 * 180.02562 * 7 5 4 33 33 H 1.09003 * 109.46870 * 181.58091 * 8 5 4 34 34 H 1.09001 * 109.47150 * 301.57288 * 8 5 4 35 35 H 0.96999 * 119.99692 * 180.02562 * 12 11 9 36 36 H 1.09007 * 110.32492 * 237.79414 * 19 17 4 37 37 H 1.08994 * 110.33054 * 0.02562 * 19 17 4 38 38 H 1.08993 * 110.41601 * 142.63049 * 20 19 17 39 39 H 1.09000 * 110.40979 * 265.07494 * 20 19 17 40 40 H 1.00896 * 111.00122 * 80.07395 * 21 20 19 41 41 H 1.08991 * 110.39615 * 280.64363 * 22 21 20 42 42 H 1.09005 * 110.50284 * 158.14168 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4999 1.4458 -0.1641 5 6 4.0048 2.8117 -0.3569 6 1 3.4304 3.3040 -1.1416 7 6 3.8626 3.5970 0.9484 8 6 5.4794 2.7578 -0.7616 9 6 5.6153 2.0177 -2.0672 10 1 4.7377 1.6253 -2.5594 11 6 6.8599 1.8423 -2.6339 12 7 7.9286 2.3206 -2.0347 13 14 7.0285 0.9242 -4.2520 14 1 5.6867 0.4898 -4.7167 15 1 7.6379 1.8196 -5.2679 16 1 7.8949 -0.2660 -4.0578 17 6 4.1593 0.7968 0.9768 18 1 5.2021 1.1083 1.0379 19 6 3.4206 1.1377 2.2875 20 6 2.9399 -0.2206 2.8420 21 7 3.8631 -1.2179 2.2417 22 6 4.0651 -0.7388 0.8483 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5807 1.9902 -0.8228 29 1 1.7796 1.9199 0.9446 30 1 2.8120 3.6353 1.2367 31 1 4.4369 3.1046 1.7332 32 1 4.2368 4.6106 0.8052 33 1 5.8616 3.7721 -0.8773 34 1 6.0493 2.2407 0.0103 35 1 8.8041 2.1975 -2.4337 36 1 4.1012 1.6149 2.9926 37 1 2.5685 1.7862 2.0842 38 1 3.0179 -0.2365 3.9290 39 1 1.9139 -0.4167 2.5306 40 1 4.7383 -1.2480 2.7427 41 1 3.2158 -1.0165 0.2242 42 1 4.9895 -1.1431 0.4358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695825067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:31 Heat of formation + Delta-G solvation = 5.552502 kcal Electronic energy + Delta-G solvation = -19059.876150 eV Core-core repulsion = 16460.728761 eV Total energy + Delta-G solvation = -2599.147389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39083 -37.45274 -35.37614 -34.32947 -31.66777 -30.32023 -29.24131 -28.67438 -26.29430 -24.88291 -23.32436 -22.16871 -21.15223 -19.80677 -18.33847 -17.92247 -17.27835 -16.59457 -16.38841 -15.20698 -14.94599 -14.70102 -14.58842 -14.25048 -13.94172 -13.75438 -13.45128 -13.32833 -13.09149 -12.93702 -12.80749 -12.71944 -12.47695 -12.29608 -12.21584 -11.97697 -11.91846 -11.48049 -11.28017 -11.03603 -10.90011 -10.84441 -10.47523 -9.59579 -8.82829 -8.10816 -6.14924 1.39434 1.40899 1.53864 2.46472 3.07404 3.25519 3.43527 3.87942 3.96978 4.05981 4.19367 4.26222 4.29426 4.45901 4.47758 4.52186 4.57789 4.59880 4.67543 4.77861 4.88567 4.93766 4.96867 5.05175 5.12135 5.18477 5.21086 5.26193 5.29624 5.34311 5.45116 5.51299 5.57554 5.71014 5.71624 5.90122 6.34195 6.42125 6.53082 6.60338 6.99551 7.51025 9.01446 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.007691 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.062615 B = 3639.805601 C = 3722.721735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.047 3.953 4 N -0.519 5.519 5 C 0.093 3.907 6 H 0.061 0.939 7 C -0.173 4.173 8 C 0.038 3.962 9 C -0.493 4.493 10 H 0.058 0.942 11 C -0.006 4.006 12 N -0.941 5.941 13 Si 0.954 3.046 14 H -0.265 1.265 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.060 3.940 18 H 0.052 0.948 19 C -0.189 4.189 20 C 0.042 3.958 21 N -0.667 5.667 22 C 0.031 3.969 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.050 0.950 33 H -0.012 1.012 34 H -0.006 1.006 35 H 0.258 0.742 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.337 0.663 41 H 0.108 0.892 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 -3.732 9.229 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.080 4.080 4 N -0.241 5.241 5 C -0.015 4.015 6 H 0.080 0.920 7 C -0.232 4.232 8 C 0.001 3.999 9 C -0.531 4.531 10 H 0.076 0.924 11 C -0.201 4.201 12 N -0.584 5.584 13 Si 0.780 3.220 14 H -0.189 1.189 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.051 4.051 18 H 0.070 0.930 19 C -0.229 4.229 20 C -0.088 4.088 21 N -0.294 5.294 22 C -0.099 4.099 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.006 0.994 34 H 0.012 0.988 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.804 -4.565 8.630 16.908 hybrid contribution 1.403 1.211 -0.261 1.872 sum -12.401 -3.354 8.369 15.332 Atomic orbital electron populations 1.21715 0.94429 1.02096 1.01931 1.22136 0.96381 0.96145 1.02924 1.22392 0.87430 0.97933 1.00254 1.62176 1.04474 1.17770 1.39667 1.21601 0.96729 0.87656 0.95528 0.92032 1.22567 1.01499 1.00497 0.98615 1.19051 0.91137 0.94388 0.95338 1.21493 0.92424 1.33042 1.06158 0.92354 1.25838 0.95977 0.97306 1.01018 1.70103 0.98637 1.48650 1.41003 0.85551 0.78146 0.78244 0.80014 1.18919 1.20872 1.21022 1.22904 0.97488 0.95965 0.88738 0.92971 1.23769 1.01635 1.00300 0.97197 1.23131 0.98009 0.88079 0.99536 1.63472 1.16793 1.46335 1.02752 1.23559 1.02576 0.91940 0.91796 0.91958 0.93038 0.91959 0.92996 0.89172 0.92063 0.92899 0.91454 0.92693 0.93067 0.99374 0.98807 0.93368 0.91973 0.88887 0.89443 0.89255 0.84787 0.87429 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.91 71.98 0.71 -2.09 16 2 C -0.14 -3.50 4.27 30.59 0.13 -3.37 16 3 C 0.05 1.34 4.16 86.30 0.36 1.70 16 4 N -0.52 -18.91 4.10 -840.72 -3.45 -22.36 16 5 C 0.09 3.77 2.29 44.92 0.10 3.88 16 6 H 0.06 2.55 7.97 -2.38 -0.02 2.53 16 7 C -0.17 -5.70 7.73 71.98 0.56 -5.15 16 8 C 0.04 1.99 4.36 29.85 0.13 2.12 16 9 C -0.49 -28.13 8.76 25.60 0.22 -27.90 16 10 H 0.06 3.32 7.71 -2.91 -0.02 3.29 16 11 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 12 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 13 Si 0.95 46.06 29.54 68.60 2.03 48.08 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 17 C 0.06 2.04 2.37 45.81 0.11 2.15 16 18 H 0.05 2.20 5.73 -2.39 -0.01 2.19 16 19 C -0.19 -4.87 4.17 31.49 0.13 -4.74 16 20 C 0.04 0.91 6.79 86.45 0.59 1.50 16 21 N -0.67 -17.23 7.60 -500.45 -3.80 -21.03 16 22 C 0.03 0.99 6.49 86.42 0.56 1.55 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.52 7.46 -2.39 -0.02 1.50 16 27 H 0.09 2.23 2.52 -2.39 -0.01 2.22 16 28 H 0.06 1.80 7.97 -2.39 -0.02 1.78 16 29 H 0.05 1.35 4.33 -2.39 -0.01 1.34 16 30 H 0.07 1.84 6.37 -2.39 -0.02 1.83 16 31 H 0.05 1.82 5.42 -2.38 -0.01 1.81 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H -0.01 -0.35 6.18 -2.39 -0.01 -0.37 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.06 1.60 7.48 -2.38 -0.02 1.58 16 37 H 0.09 2.28 3.81 -2.39 -0.01 2.27 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.84 6.30 -2.39 -0.02 1.82 16 40 H 0.34 8.22 8.92 -89.70 -0.80 7.42 16 41 H 0.11 3.42 4.04 -2.39 -0.01 3.41 16 42 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -63.58 300.13 -0.66 -64.24 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.21 Total: 19.28 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 4.07 Total: -30.22 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -6.97 Total: -101.39 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -63.58 -0.66 -64.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695825067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.792 kcal (2) G-P(sol) polarization free energy of solvation -63.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds