Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46683 * 2 1 4 4 H 1.09006 * 109.47351 * 305.51885 * 3 2 1 5 5 C 1.50702 * 109.46989 * 185.52379 * 3 2 1 6 6 H 1.07999 * 120.00208 * 240.00108 * 5 3 2 7 7 C 1.37884 * 119.99774 * 59.99611 * 5 3 2 8 8 N 1.31506 * 120.00001 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99579 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46998 * 90.00490 * 9 7 5 11 11 H 1.48503 * 109.46875 * 209.99966 * 9 7 5 12 12 H 1.48502 * 109.47415 * 330.00100 * 9 7 5 13 13 N 1.46895 * 109.47545 * 65.52345 * 3 2 1 14 14 C 1.46902 * 111.00327 * 205.12971 * 13 3 2 15 15 H 1.09001 * 109.46776 * 326.52619 * 14 13 3 16 16 C 1.53007 * 109.46840 * 86.52100 * 14 13 3 17 17 C 1.53001 * 109.47530 * 206.52051 * 14 13 3 18 18 H 1.08999 * 109.50049 * 299.92377 * 17 14 13 19 19 C 1.53115 * 109.50180 * 179.80550 * 17 14 13 20 20 C 1.53123 * 109.15502 * 182.40519 * 19 17 14 21 21 C 1.53036 * 109.28154 * 57.65431 * 20 19 17 22 22 N 1.46839 * 109.52103 * 300.81870 * 21 20 19 23 23 C 1.46850 * 111.19815 * 61.74371 * 22 21 20 24 24 H 1.08997 * 109.47176 * 61.81995 * 1 2 3 25 25 H 1.08992 * 109.46937 * 181.82323 * 1 2 3 26 26 H 1.09004 * 109.46995 * 301.82031 * 1 2 3 27 27 H 1.08993 * 109.46645 * 239.99941 * 2 1 3 28 28 H 1.08997 * 109.46769 * 119.99300 * 2 1 3 29 29 H 0.97005 * 120.00009 * 179.97438 * 8 7 5 30 30 H 1.00895 * 110.99976 * 329.09013 * 13 3 2 31 31 H 1.08998 * 109.47201 * 185.39237 * 16 14 13 32 32 H 1.09005 * 109.47059 * 305.38802 * 16 14 13 33 33 H 1.08992 * 109.46985 * 65.38684 * 16 14 13 34 34 H 1.08996 * 109.52333 * 302.30781 * 19 17 14 35 35 H 1.08997 * 109.52286 * 62.50044 * 19 17 14 36 36 H 1.09000 * 109.50358 * 297.70679 * 20 19 17 37 37 H 1.09004 * 109.49855 * 177.59710 * 20 19 17 38 38 H 1.08995 * 109.46388 * 180.80144 * 21 20 19 39 39 H 1.09006 * 109.46003 * 60.83357 * 21 20 19 40 40 H 1.00897 * 111.00101 * 297.64579 * 22 21 20 41 41 H 1.09005 * 109.45924 * 178.24025 * 23 22 21 42 42 H 1.08992 * 109.46479 * 58.27491 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 -0.8365 5 6 3.5408 1.4448 -0.1368 6 1 4.1527 1.8870 0.6354 7 6 4.1326 0.8822 -1.2478 8 7 3.3874 0.3441 -2.1883 9 14 5.9929 0.8844 -1.4169 10 1 6.5472 -0.3495 -0.8041 11 1 6.3591 0.9301 -2.8554 12 1 6.5515 2.0743 -0.7259 13 7 1.6622 2.0955 1.2604 14 6 1.5788 3.5527 1.0942 15 1 2.3231 3.8786 0.3675 16 6 0.1817 3.9302 0.5976 17 6 1.8444 4.2354 2.4374 18 1 1.0996 3.9109 3.1641 19 6 1.7625 5.7545 2.2638 20 6 2.0884 6.4310 3.5982 21 6 3.4786 5.9903 4.0620 22 7 3.5052 4.5300 4.2138 23 6 3.2417 3.8583 2.9348 24 1 -0.3633 0.4853 -0.9058 25 1 -0.3633 -1.0271 0.0327 26 1 -0.3633 0.5419 0.8732 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.8038 -0.0514 -2.9701 30 1 0.7948 1.7218 1.6155 31 1 0.1487 4.9983 0.3829 32 1 -0.0451 3.3701 -0.3096 33 1 -0.5537 3.6911 1.3657 34 1 2.4804 6.0740 1.5085 35 1 0.7557 6.0316 1.9512 36 1 1.3474 6.1417 4.3435 37 1 2.0735 7.5134 3.4706 38 1 3.7079 6.4591 5.0189 39 1 4.2207 6.2922 3.3227 40 1 2.8528 4.2281 4.9218 41 1 3.2989 2.7786 3.0731 42 1 3.9848 4.1701 2.2009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699670599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = -24.205291 kcal Electronic energy + Delta-G solvation = -18554.502710 eV Core-core repulsion = 15954.064926 eV Total energy + Delta-G solvation = -2600.437784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.97679 -36.50671 -33.71493 -31.75540 -31.20919 -29.69413 -28.13724 -26.08937 -23.77683 -22.69208 -22.58768 -20.52192 -19.77593 -19.26247 -16.20178 -15.63277 -15.11824 -14.74128 -14.40699 -14.37541 -13.82489 -13.54483 -12.95773 -12.84288 -12.44848 -12.41902 -12.00939 -11.84652 -11.60755 -11.21746 -11.19132 -11.00840 -10.85924 -10.83351 -10.61947 -10.56613 -10.19493 -10.02463 -9.91291 -9.64405 -9.38049 -9.03609 -8.31291 -8.04042 -7.12959 -5.93091 -3.96664 3.35359 3.41818 3.46291 4.48085 4.60318 4.89361 5.04935 5.11945 5.32181 5.35262 5.44352 5.65522 5.73171 5.76964 5.84021 5.88585 5.96991 6.04288 6.13336 6.17940 6.18417 6.29159 6.29549 6.38476 6.41469 6.48923 6.62030 6.79966 6.86781 6.93284 7.12328 7.22575 7.36869 7.56010 7.68491 7.82190 7.97092 8.37001 8.44544 8.81852 9.12088 9.68409 11.12220 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.007875 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.173365 B = 3554.564787 C = 4419.506382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.097 3.903 15 H 0.080 0.920 16 C -0.178 4.178 17 C -0.104 4.104 18 H 0.058 0.942 19 C -0.117 4.117 20 C -0.155 4.155 21 C 0.056 3.944 22 N -0.690 5.690 23 C 0.072 3.928 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.258 0.742 30 H 0.315 0.685 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.334 0.666 41 H 0.095 0.905 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 8.418 8.547 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.014 4.014 15 H 0.099 0.901 16 C -0.237 4.237 17 C -0.125 4.125 18 H 0.076 0.924 19 C -0.155 4.155 20 C -0.194 4.194 21 C -0.074 4.074 22 N -0.317 5.317 23 C -0.057 4.057 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.113 0.887 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.502 8.278 8.547 12.404 hybrid contribution -0.981 0.246 -0.918 1.365 sum -4.483 8.524 7.630 12.287 Atomic orbital electron populations 1.21880 0.99746 0.99405 0.99625 1.21769 0.91104 1.00585 1.02983 1.19131 0.95289 0.89787 0.84513 0.98126 1.21234 0.91285 1.36149 1.04127 0.91945 1.24953 0.97923 0.95783 0.95933 1.69872 1.34598 1.39700 1.09616 0.86591 0.86058 0.78455 0.76855 1.20810 1.21568 1.19937 1.60747 1.35728 1.01707 1.32777 1.21392 0.94977 0.89976 0.95095 0.90130 1.22541 0.99059 1.01047 1.01082 1.21781 0.99034 0.93555 0.98169 0.92362 1.21671 1.01291 0.95780 0.96769 1.22253 0.98900 1.00209 0.98065 1.21998 0.95497 0.89148 1.00775 1.60753 1.56218 1.05129 1.09592 1.22000 0.94143 1.00259 0.89332 0.94003 0.94551 0.94630 0.88358 0.94128 0.93192 0.86698 0.93127 0.92736 0.93585 0.91981 0.92301 0.92492 0.92169 0.91598 0.91206 0.84956 0.88676 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.78 37.16 0.36 -2.50 16 2 C -0.13 -2.93 5.36 -26.73 -0.14 -3.07 16 3 C 0.22 5.30 1.82 -68.87 -0.13 5.17 16 4 H 0.00 0.03 7.21 -51.93 -0.37 -0.34 16 5 C -0.49 -13.17 8.51 -34.44 -0.29 -13.47 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.44 11.29 55.43 0.63 -24.81 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.61 5.30 -100.95 -0.54 -14.14 16 14 C 0.10 1.73 1.97 -67.71 -0.13 1.60 16 15 H 0.08 1.68 7.63 -51.93 -0.40 1.28 16 16 C -0.18 -2.83 8.65 37.16 0.32 -2.51 16 17 C -0.10 -1.58 2.11 -90.54 -0.19 -1.77 16 18 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.12 -1.55 4.86 -26.61 -0.13 -1.68 16 20 C -0.15 -1.76 6.08 -26.65 -0.16 -1.93 16 21 C 0.06 0.68 6.55 -3.84 -0.03 0.66 16 22 N -0.69 -9.68 6.87 -113.82 -0.78 -10.47 16 23 C 0.07 1.17 5.67 -3.83 -0.02 1.15 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.61 6.40 -51.93 -0.33 0.28 16 27 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 5.92 6.21 -39.29 -0.24 5.68 16 31 H 0.05 0.72 6.79 -51.93 -0.35 0.37 16 32 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.74 6.70 -51.93 -0.35 0.40 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.33 4.23 8.86 -39.29 -0.35 3.89 16 41 H 0.09 1.77 7.63 -51.93 -0.40 1.37 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 317.52 15.07 4.79 4.79 Total: -1.00 -26.96 317.52 -9.25 -36.21 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.69 Total: 8.85 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.63 Total: -16.95 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.69 Total: -49.42 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.96 -9.25 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699670599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.000 kcal (2) G-P(sol) polarization free energy of solvation -26.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds