Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 H 1.09001 * 109.46676 * 305.00237 * 3 2 1 5 5 C 1.50692 * 109.47245 * 184.99750 * 3 2 1 6 6 H 1.08006 * 120.00255 * 239.99932 * 5 3 2 7 7 C 1.37880 * 120.00047 * 60.27473 * 5 3 2 8 8 N 1.31510 * 119.99811 * 359.72706 * 7 5 3 9 9 Si 1.86805 * 119.99986 * 179.72294 * 7 5 3 10 10 H 1.48498 * 109.46922 * 89.99879 * 9 7 5 11 11 H 1.48496 * 109.46948 * 210.00069 * 9 7 5 12 12 H 1.48502 * 109.47049 * 330.00134 * 9 7 5 13 13 N 1.46898 * 109.47018 * 64.99568 * 3 2 1 14 14 C 1.46898 * 111.00037 * 204.05946 * 13 3 2 15 15 H 1.08999 * 109.47200 * 325.47151 * 14 13 3 16 16 C 1.53002 * 109.47567 * 85.47551 * 14 13 3 17 17 C 1.53006 * 109.47212 * 205.47837 * 14 13 3 18 18 H 1.08995 * 109.50055 * 59.99665 * 17 14 13 19 19 C 1.53114 * 109.50215 * 180.02562 * 17 14 13 20 20 C 1.53123 * 109.16042 * 177.59558 * 19 17 14 21 21 C 1.53037 * 109.27395 * 302.34165 * 20 19 17 22 22 N 1.46844 * 109.52629 * 59.17962 * 21 20 19 23 23 C 1.46849 * 111.23088 * 298.27730 * 22 21 20 24 24 H 1.09006 * 109.47126 * 184.41121 * 1 2 3 25 25 H 1.09000 * 109.47603 * 304.40922 * 1 2 3 26 26 H 1.08995 * 109.46930 * 64.41370 * 1 2 3 27 27 H 1.08999 * 109.47459 * 240.00086 * 2 1 3 28 28 H 1.09004 * 109.46969 * 119.99639 * 2 1 3 29 29 H 0.97002 * 120.00199 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99957 * 80.10621 * 13 3 2 31 31 H 1.09003 * 109.46852 * 62.97660 * 16 14 13 32 32 H 1.08993 * 109.47436 * 182.98067 * 16 14 13 33 33 H 1.08998 * 109.46588 * 302.98285 * 16 14 13 34 34 H 1.09000 * 109.52276 * 297.49278 * 19 17 14 35 35 H 1.09001 * 109.52831 * 57.62269 * 19 17 14 36 36 H 1.08998 * 109.50417 * 62.27756 * 20 19 17 37 37 H 1.08997 * 109.50466 * 182.40676 * 20 19 17 38 38 H 1.09008 * 109.46367 * 179.19414 * 21 20 19 39 39 H 1.08998 * 109.46488 * 299.15911 * 21 20 19 40 40 H 1.00899 * 111.00618 * 174.15229 * 22 21 20 41 41 H 1.08993 * 109.42734 * 301.68069 * 23 22 21 42 42 H 1.09008 * 109.49379 * 181.71231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1430 0.8834 -1.2306 8 7 3.4060 0.3421 -2.1757 9 14 6.0045 0.8926 -1.3877 10 1 6.5593 -0.3389 -0.7705 11 1 6.3798 0.9390 -2.8237 12 1 6.5539 2.0849 -0.6936 13 7 1.6513 2.0993 1.2552 14 6 1.5942 3.5579 1.0904 15 1 2.3680 3.8751 0.3914 16 6 0.2209 3.9564 0.5462 17 6 1.8220 4.2334 2.4442 18 1 2.8002 3.9499 2.8323 19 6 1.7619 5.7538 2.2734 20 6 1.9308 6.4203 3.6415 21 6 0.8390 5.9154 4.5876 22 7 0.9392 4.4562 4.7183 23 6 0.7339 3.7911 3.4253 24 1 -0.3634 -1.0247 0.0790 25 1 -0.3634 0.5807 0.8478 26 1 -0.3633 0.4438 -0.9269 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.8289 -0.0522 -2.9546 30 1 2.2762 1.8443 2.0053 31 1 -0.5487 3.6866 1.2694 32 1 0.1965 5.0323 0.3740 33 1 0.0365 3.4339 -0.3925 34 1 2.5632 6.0776 1.6092 35 1 0.7991 6.0348 1.8466 36 1 2.9101 6.1705 4.0497 37 1 1.8462 7.5015 3.5325 38 1 0.9650 6.3772 5.5670 39 1 -0.1396 6.1777 4.1858 40 1 0.2915 4.1097 5.4101 41 1 -0.2446 4.0627 3.0293 42 1 0.7838 2.7105 3.5601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699670600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -22.981025 kcal Electronic energy + Delta-G solvation = -18479.771492 eV Core-core repulsion = 15879.386796 eV Total energy + Delta-G solvation = -2600.384696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.99934 -36.25565 -33.71228 -31.82468 -31.37442 -29.72354 -28.02811 -25.98877 -23.71823 -23.46715 -22.49141 -20.40866 -19.34119 -18.54109 -16.70206 -16.17676 -14.95579 -14.73628 -14.51024 -14.27279 -13.73678 -13.54535 -12.97139 -12.83609 -12.57317 -12.51884 -12.07228 -11.72889 -11.48088 -11.28475 -11.10041 -11.08311 -10.84742 -10.67151 -10.53810 -10.26443 -10.14296 -9.96907 -9.85018 -9.54198 -9.32257 -8.96738 -8.33779 -8.28575 -7.18602 -5.96137 -4.08947 3.28578 3.35705 3.38606 4.34137 4.42079 4.92383 5.05228 5.08635 5.28483 5.33693 5.46503 5.59572 5.62200 5.77220 5.85623 5.92937 6.01649 6.06787 6.17723 6.27251 6.31963 6.42687 6.43110 6.55268 6.58812 6.62564 6.74609 6.80728 6.98389 7.17423 7.19210 7.21898 7.48780 7.51266 7.65210 7.81978 8.14228 8.22506 8.39969 8.73882 9.05210 9.58677 11.03579 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.006796 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.021568 B = 4119.336142 C = 4758.836069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.093 3.907 15 H 0.048 0.952 16 C -0.137 4.137 17 C -0.082 4.082 18 H 0.071 0.929 19 C -0.117 4.117 20 C -0.117 4.117 21 C 0.059 3.941 22 N -0.695 5.695 23 C 0.069 3.931 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.327 0.673 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.337 0.663 41 H 0.031 0.969 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 8.684 9.384 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.313 5.313 14 C -0.018 4.018 15 H 0.066 0.934 16 C -0.195 4.195 17 C -0.101 4.101 18 H 0.090 0.910 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.070 4.070 22 N -0.325 5.325 23 C -0.059 4.059 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.155 0.845 41 H 0.049 0.951 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.776 8.498 9.028 13.677 hybrid contribution 1.125 0.276 -0.399 1.225 sum -4.651 8.774 8.628 13.155 Atomic orbital electron populations 1.21707 0.99101 0.98333 1.00311 1.21488 0.92024 0.99404 1.01525 1.19146 0.92539 0.91104 0.86471 0.94977 1.21896 0.92928 1.38072 1.05309 0.92936 1.24928 0.97772 0.95094 0.95739 1.69879 1.34728 1.38482 1.09335 0.86686 0.86308 0.78386 0.77151 1.20673 1.21267 1.20104 1.60963 1.55985 1.04905 1.09483 1.21307 0.96391 0.89939 0.94131 0.93425 1.21870 0.97591 0.98932 1.01089 1.21319 0.99199 0.94249 0.95329 0.91012 1.21677 1.01823 0.95602 0.96447 1.21577 0.99439 0.98826 0.95616 1.21877 0.97115 0.88884 0.99147 1.60276 1.57880 1.04462 1.09924 1.21971 0.96811 0.99273 0.87885 0.95816 0.93119 0.94674 0.89335 0.95224 0.92966 0.85617 0.92939 0.93871 0.92801 0.91993 0.92020 0.91406 0.92165 0.91534 0.95707 0.84549 0.95070 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.85 37.16 0.37 -2.46 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.25 1.78 -68.87 -0.12 5.13 16 4 H 0.03 0.88 7.14 -51.93 -0.37 0.51 16 5 C -0.54 -14.59 8.22 -34.44 -0.28 -14.87 16 6 H 0.05 1.41 7.76 -52.48 -0.41 1.01 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -25.10 11.30 55.43 0.63 -24.48 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.87 4.74 -100.95 -0.48 -14.35 16 14 C 0.09 1.70 2.25 -67.71 -0.15 1.55 16 15 H 0.05 1.01 7.60 -51.93 -0.39 0.62 16 16 C -0.14 -2.29 8.71 37.16 0.32 -1.97 16 17 C -0.08 -1.26 2.03 -90.54 -0.18 -1.45 16 18 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 19 C -0.12 -1.59 5.00 -26.61 -0.13 -1.72 16 20 C -0.12 -1.38 6.09 -26.65 -0.16 -1.54 16 21 C 0.06 0.67 6.55 -3.84 -0.03 0.64 16 22 N -0.69 -8.68 6.84 -113.81 -0.78 -9.46 16 23 C 0.07 0.98 5.34 -3.83 -0.02 0.96 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.00 7.63 -51.93 -0.40 0.60 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.38 5.96 -51.93 -0.31 2.07 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.33 6.73 7.88 -39.29 -0.31 6.42 16 31 H 0.05 0.83 6.25 -51.93 -0.32 0.51 16 32 H 0.04 0.64 6.54 -51.93 -0.34 0.30 16 33 H 0.05 1.00 7.42 -51.93 -0.39 0.61 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.81 6.38 -51.93 -0.33 0.48 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.34 3.59 8.90 -39.29 -0.35 3.24 16 41 H 0.03 0.44 6.32 -51.93 -0.33 0.12 16 42 H 0.08 1.29 7.51 -51.92 -0.39 0.90 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -27.16 315.16 -9.11 -36.27 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.57 Total: 7.68 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.63 Total: -16.67 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.63 Total: -48.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.16 -9.11 -36.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699670600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.293 kcal (2) G-P(sol) polarization free energy of solvation -27.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds