Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 H 1.09001 * 109.46676 * 305.00237 * 3 2 1 5 5 C 1.50692 * 109.47245 * 184.99750 * 3 2 1 6 6 H 1.08006 * 120.00255 * 239.99932 * 5 3 2 7 7 C 1.37880 * 120.00047 * 60.27473 * 5 3 2 8 8 N 1.31510 * 119.99811 * 359.72706 * 7 5 3 9 9 Si 1.86805 * 119.99986 * 179.72294 * 7 5 3 10 10 H 1.48498 * 109.46922 * 89.99879 * 9 7 5 11 11 H 1.48496 * 109.46948 * 210.00069 * 9 7 5 12 12 H 1.48502 * 109.47049 * 330.00134 * 9 7 5 13 13 N 1.46898 * 109.47018 * 64.99568 * 3 2 1 14 14 C 1.46898 * 111.00037 * 204.05946 * 13 3 2 15 15 H 1.08999 * 109.47200 * 325.47151 * 14 13 3 16 16 C 1.53002 * 109.47567 * 85.47551 * 14 13 3 17 17 C 1.53006 * 109.47212 * 205.47837 * 14 13 3 18 18 H 1.08995 * 109.50055 * 59.99665 * 17 14 13 19 19 C 1.53114 * 109.50215 * 180.02562 * 17 14 13 20 20 C 1.53123 * 109.16042 * 177.59558 * 19 17 14 21 21 C 1.53037 * 109.27395 * 302.34165 * 20 19 17 22 22 N 1.46844 * 109.52629 * 59.17962 * 21 20 19 23 23 C 1.46849 * 111.23088 * 298.27730 * 22 21 20 24 24 H 1.09006 * 109.47126 * 184.41121 * 1 2 3 25 25 H 1.09000 * 109.47603 * 304.40922 * 1 2 3 26 26 H 1.08995 * 109.46930 * 64.41370 * 1 2 3 27 27 H 1.08999 * 109.47459 * 240.00086 * 2 1 3 28 28 H 1.09004 * 109.46969 * 119.99639 * 2 1 3 29 29 H 0.97002 * 120.00199 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99957 * 80.10621 * 13 3 2 31 31 H 1.09003 * 109.46852 * 62.97660 * 16 14 13 32 32 H 1.08993 * 109.47436 * 182.98067 * 16 14 13 33 33 H 1.08998 * 109.46588 * 302.98285 * 16 14 13 34 34 H 1.09000 * 109.52276 * 297.49278 * 19 17 14 35 35 H 1.09001 * 109.52831 * 57.62269 * 19 17 14 36 36 H 1.08998 * 109.50417 * 62.27756 * 20 19 17 37 37 H 1.08997 * 109.50466 * 182.40676 * 20 19 17 38 38 H 1.09008 * 109.46367 * 179.19414 * 21 20 19 39 39 H 1.08998 * 109.46488 * 299.15911 * 21 20 19 40 40 H 1.00899 * 111.00618 * 174.15229 * 22 21 20 41 41 H 1.08993 * 109.42734 * 301.68069 * 23 22 21 42 42 H 1.09008 * 109.49379 * 181.71231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1430 0.8834 -1.2306 8 7 3.4060 0.3421 -2.1757 9 14 6.0045 0.8926 -1.3877 10 1 6.5593 -0.3389 -0.7705 11 1 6.3798 0.9390 -2.8237 12 1 6.5539 2.0849 -0.6936 13 7 1.6513 2.0993 1.2552 14 6 1.5942 3.5579 1.0904 15 1 2.3680 3.8751 0.3914 16 6 0.2209 3.9564 0.5462 17 6 1.8220 4.2334 2.4442 18 1 2.8002 3.9499 2.8323 19 6 1.7619 5.7538 2.2734 20 6 1.9308 6.4203 3.6415 21 6 0.8390 5.9154 4.5876 22 7 0.9392 4.4562 4.7183 23 6 0.7339 3.7911 3.4253 24 1 -0.3634 -1.0247 0.0790 25 1 -0.3634 0.5807 0.8478 26 1 -0.3633 0.4438 -0.9269 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.8289 -0.0522 -2.9546 30 1 2.2762 1.8443 2.0053 31 1 -0.5487 3.6866 1.2694 32 1 0.1965 5.0323 0.3740 33 1 0.0365 3.4339 -0.3925 34 1 2.5632 6.0776 1.6092 35 1 0.7991 6.0348 1.8466 36 1 2.9101 6.1705 4.0497 37 1 1.8462 7.5015 3.5325 38 1 0.9650 6.3772 5.5670 39 1 -0.1396 6.1777 4.1858 40 1 0.2915 4.1097 5.4101 41 1 -0.2446 4.0627 3.0293 42 1 0.7838 2.7105 3.5601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699670600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -40.571155 kcal Electronic energy + Delta-G solvation = -18480.534257 eV Core-core repulsion = 15879.386796 eV Total energy + Delta-G solvation = -2601.147461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23074 -37.86714 -35.33089 -33.58567 -32.66332 -31.22330 -29.42013 -27.91084 -25.19976 -24.58290 -24.11068 -21.65918 -21.21174 -19.81305 -18.66043 -17.39271 -16.78886 -16.13254 -16.05594 -15.42654 -15.25108 -14.79961 -14.61491 -14.36535 -13.94041 -13.74678 -13.40495 -13.26700 -13.15037 -13.01142 -12.93273 -12.58077 -12.52380 -12.17158 -12.09191 -11.70295 -11.54256 -11.50918 -11.38433 -11.14342 -11.04921 -10.78346 -10.44319 -9.27020 -8.99533 -8.04326 -6.26682 1.36337 1.37917 1.46683 2.39518 3.14477 3.36232 3.62133 3.94932 4.01865 4.08275 4.29821 4.38338 4.56036 4.61042 4.64821 4.70355 4.74834 4.79921 4.84490 4.93389 4.99528 5.04944 5.08483 5.13663 5.14306 5.21527 5.26057 5.40469 5.44699 5.45406 5.53240 5.62856 5.67756 5.81490 6.14398 6.17545 6.25111 6.43989 6.61327 6.87929 7.05682 7.44865 8.91334 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.006796 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.021568 B = 4119.336142 C = 4758.836069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C 0.225 3.775 4 H -0.001 1.001 5 C -0.557 4.557 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.094 3.906 15 H 0.011 0.989 16 C -0.128 4.128 17 C -0.074 4.074 18 H 0.051 0.949 19 C -0.116 4.116 20 C -0.114 4.114 21 C 0.059 3.941 22 N -0.702 5.702 23 C 0.079 3.921 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.033 0.967 40 H 0.350 0.650 41 H 0.036 0.964 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 9.745 10.879 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.017 0.983 5 C -0.597 4.597 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.299 5.299 14 C -0.017 4.017 15 H 0.029 0.971 16 C -0.185 4.185 17 C -0.093 4.093 18 H 0.070 0.930 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.071 4.071 22 N -0.334 5.334 23 C -0.050 4.050 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.169 0.831 41 H 0.054 0.946 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.349 9.567 10.543 15.589 hybrid contribution 1.302 -0.024 -0.853 1.557 sum -5.047 9.543 9.690 14.507 Atomic orbital electron populations 1.21555 0.96366 0.99823 1.00389 1.21350 0.94448 0.98489 0.99820 1.18889 0.91123 0.91407 0.87007 0.98290 1.22195 0.94372 1.37857 1.05242 0.93619 1.25640 1.01890 0.94901 0.95551 1.70005 1.36273 1.39030 1.09693 0.85732 0.81383 0.78412 0.77146 1.20067 1.20864 1.19913 1.60922 1.55169 1.06207 1.07553 1.21340 0.96333 0.88685 0.95303 0.97096 1.21785 0.96680 1.00012 1.00070 1.21184 0.98770 0.95591 0.93768 0.93042 1.21665 1.01967 0.93967 0.97803 1.21576 0.99261 1.00025 0.94319 1.21952 0.97110 0.87895 1.00100 1.60216 1.58606 1.05409 1.09171 1.21761 0.96095 0.98661 0.88485 0.93744 0.92050 0.95330 0.92378 0.95445 0.92952 0.85761 0.91511 0.91737 0.95165 0.92850 0.91165 0.92434 0.89946 0.89549 0.94899 0.83096 0.94637 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.85 71.98 0.71 -4.33 16 2 C -0.10 -4.98 5.45 30.59 0.17 -4.81 16 3 C 0.22 11.28 1.78 44.17 0.08 11.36 16 4 H 0.00 -0.05 7.14 -2.39 -0.02 -0.07 16 5 C -0.56 -30.74 8.22 25.60 0.21 -30.53 16 6 H 0.05 2.52 7.76 -2.91 -0.02 2.50 16 7 C 0.02 1.12 5.30 84.66 0.45 1.57 16 8 N -0.91 -52.80 11.30 21.45 0.24 -52.55 16 9 Si 0.95 44.21 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 13 N -0.67 -27.58 4.74 -473.31 -2.24 -29.83 16 14 C 0.09 3.48 2.25 44.92 0.10 3.58 16 15 H 0.01 0.48 7.60 -2.39 -0.02 0.47 16 16 C -0.13 -4.19 8.71 71.98 0.63 -3.57 16 17 C -0.07 -2.24 2.03 -10.74 -0.02 -2.27 16 18 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 19 C -0.12 -2.97 5.00 30.67 0.15 -2.82 16 20 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16 21 C 0.06 1.13 6.55 86.33 0.57 1.69 16 22 N -0.70 -15.86 6.84 -514.00 -3.52 -19.37 16 23 C 0.08 2.11 5.34 86.33 0.46 2.57 16 24 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.06 2.34 7.63 -2.39 -0.02 2.32 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 3.19 5.96 -2.39 -0.01 3.18 16 28 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.33 13.61 7.88 -89.69 -0.71 12.90 16 31 H 0.07 2.00 6.25 -2.39 -0.01 1.98 16 32 H 0.06 1.82 6.54 -2.39 -0.02 1.81 16 33 H 0.03 1.12 7.42 -2.39 -0.02 1.10 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.68 6.38 -2.39 -0.02 1.67 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.35 6.50 8.90 -89.69 -0.80 5.70 16 41 H 0.04 0.92 6.32 -2.39 -0.02 0.91 16 42 H 0.07 2.09 7.51 -2.38 -0.02 2.07 16 Total: -1.00 -58.96 315.16 -0.32 -59.28 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.52 Total: 26.02 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 3.69 Total: -29.78 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -5.52 Total: -101.75 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -58.96 -0.32 -59.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699670600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.706 kcal (2) G-P(sol) polarization free energy of solvation -58.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds