Wall clock time and date at job start Mon Mar 30 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47498 * 120.00220 * 9 7 5 12 12 H 1.48500 * 109.47489 * 240.00144 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.53001 * 109.47063 * 180.02562 * 15 14 13 17 17 C 1.53130 * 109.51989 * 294.68151 * 16 15 14 18 18 C 1.53034 * 109.27423 * 182.43889 * 17 16 15 19 19 N 1.46844 * 109.52626 * 59.18189 * 18 17 16 20 20 C 1.46850 * 111.19680 * 298.25697 * 19 18 17 21 21 C 1.53030 * 109.52484 * 61.73658 * 20 19 18 22 22 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 23 23 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 24 24 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 25 25 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 26 26 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 27 27 H 0.97002 * 120.00670 * 179.97438 * 8 7 5 28 28 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 29 29 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 30 30 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 31 31 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 32 32 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 33 33 H 1.09003 * 109.52212 * 54.86933 * 16 15 14 34 34 H 1.08997 * 109.49940 * 302.38167 * 17 16 15 35 35 H 1.09003 * 109.49860 * 62.49891 * 17 16 15 36 36 H 1.09000 * 109.46442 * 299.16135 * 18 17 16 37 37 H 1.09003 * 109.45919 * 179.19807 * 18 17 16 38 38 H 1.00901 * 110.99777 * 62.34729 * 19 18 17 39 39 H 1.09005 * 109.46105 * 301.72203 * 20 19 18 40 40 H 1.09003 * 109.46189 * 181.75665 * 20 19 18 41 41 H 1.09007 * 109.50391 * 180.87848 * 21 20 19 42 42 H 1.09011 * 109.50348 * 60.76704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5964 1.5471 -0.2422 11 1 6.4813 -0.5119 -1.5176 12 1 6.3711 1.6266 -2.6557 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2249 5.7221 2.2819 17 6 2.5845 6.2678 1.8365 18 6 2.5051 7.7920 1.7246 19 7 2.1318 8.3609 3.0259 20 6 0.8085 7.8880 3.4521 21 6 0.8371 6.3667 3.6156 22 1 -0.3633 -1.0227 -0.1001 23 1 -0.3633 0.4248 0.9358 24 1 -0.3633 0.5981 -0.8357 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.7977 -0.0493 -2.9748 28 1 0.7987 1.7197 1.6189 29 1 2.5182 3.9269 0.6894 30 1 0.7651 3.7925 0.4126 31 1 0.3756 3.8293 2.8612 32 1 2.1288 3.9637 3.1380 33 1 0.4721 5.9594 1.5302 34 1 3.3437 5.9957 2.5698 35 1 2.8463 5.8448 0.8666 36 1 1.7554 8.0630 0.9812 37 1 3.4756 8.1849 1.4214 38 1 2.8310 8.1562 3.7239 39 1 0.0667 8.1586 2.7006 40 1 0.5466 8.3507 4.4037 41 1 -0.1494 6.0144 3.9169 42 1 1.5689 6.0962 4.3769 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702626536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:27 Heat of formation + Delta-G solvation = -30.092804 kcal Electronic energy + Delta-G solvation = -17808.662603 eV Core-core repulsion = 15207.969517 eV Total energy + Delta-G solvation = -2600.693086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.06292 -36.45681 -34.06578 -32.06628 -31.00625 -30.73970 -27.87109 -26.02777 -23.58525 -22.88293 -22.32162 -20.79798 -20.04254 -19.40879 -16.34631 -16.03372 -15.08269 -14.71068 -14.63924 -14.40966 -14.17021 -13.82877 -13.58484 -12.86741 -12.71719 -12.46934 -12.12445 -11.95866 -11.64848 -11.44756 -11.24683 -11.11350 -10.91524 -10.78962 -10.70393 -10.58653 -10.39295 -9.99248 -9.94365 -9.65714 -9.49855 -9.03703 -8.40427 -8.33479 -7.18100 -5.95408 -3.99347 3.31433 3.39422 3.44602 4.24764 4.45642 4.67800 4.80765 4.99809 5.13628 5.29168 5.34750 5.37194 5.43687 5.58263 5.68260 5.79394 5.85836 5.90501 6.00010 6.03827 6.14839 6.17234 6.18684 6.24039 6.29071 6.37405 6.43060 6.69854 6.76671 6.85581 6.95118 7.09929 7.21918 7.28153 7.52831 7.79848 7.93907 8.34802 8.42319 8.79922 9.09113 9.65646 11.10069 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.005609 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.233677 B = 4991.045194 C = 5920.667974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.688 5.688 14 C 0.068 3.932 15 C -0.109 4.109 16 C -0.084 4.084 17 C -0.154 4.154 18 C 0.055 3.945 19 N -0.689 5.689 20 C 0.056 3.944 21 C -0.151 4.151 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.040 0.960 27 H 0.258 0.742 28 H 0.314 0.686 29 H 0.074 0.926 30 H 0.009 0.991 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.339 0.661 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 10.807 8.669 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.319 5.319 14 C -0.061 4.061 15 C -0.147 4.147 16 C -0.103 4.103 17 C -0.193 4.193 18 C -0.074 4.074 19 N -0.317 5.317 20 C -0.073 4.073 21 C -0.191 4.191 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.767 11.336 8.448 14.920 hybrid contribution 0.318 -1.057 -0.492 1.209 sum -4.448 10.279 7.955 13.738 Atomic orbital electron populations 1.21876 0.99645 0.99667 0.99503 1.21765 0.91208 1.00421 1.03021 1.19154 0.95465 0.89959 0.84384 0.98254 1.21246 0.91305 1.36242 1.04118 0.92117 1.24963 0.98061 0.95706 0.95881 1.69884 1.34554 1.39716 1.09564 0.86512 0.85875 0.77615 0.77825 1.19820 1.21123 1.21230 1.60685 1.35882 1.02431 1.32924 1.21841 1.00054 0.89959 0.94292 1.21615 1.01319 0.92971 0.98769 1.21146 0.97144 0.95486 0.96556 1.22349 0.97337 0.96695 1.02919 1.22045 1.01293 0.92507 0.91601 1.60708 1.04368 1.61380 1.05245 1.22014 0.91770 0.92827 1.00726 1.22309 1.01876 0.96985 0.97887 0.94393 0.94647 0.93951 0.88281 0.94081 0.93175 0.86901 0.90762 0.97251 0.92956 0.91588 0.91531 0.91921 0.90545 0.91114 0.90877 0.84432 0.91150 0.91117 0.91692 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.65 37.16 0.36 -2.58 16 2 C -0.13 -3.00 5.36 -26.73 -0.14 -3.15 16 3 C 0.22 5.49 2.02 -68.86 -0.14 5.35 16 4 H 0.00 0.00 7.85 -51.93 -0.41 -0.41 16 5 C -0.49 -13.65 8.55 -34.44 -0.29 -13.95 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.71 11.29 55.43 0.63 -25.09 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.69 -14.81 6.27 -107.95 -0.68 -15.49 16 14 C 0.07 1.29 5.22 -3.82 -0.02 1.27 16 15 C -0.11 -1.63 4.99 -26.73 -0.13 -1.76 16 16 C -0.08 -1.06 2.25 -90.49 -0.20 -1.27 16 17 C -0.15 -1.94 5.06 -26.65 -0.13 -2.08 16 18 C 0.06 0.61 6.55 -3.84 -0.03 0.59 16 19 N -0.69 -7.22 6.87 -113.82 -0.78 -8.01 16 20 C 0.06 0.55 6.55 -3.84 -0.03 0.53 16 21 C -0.15 -1.60 5.36 -26.66 -0.14 -1.74 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.03 0.62 6.65 -51.93 -0.35 0.28 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 2.65 5.94 -51.93 -0.31 2.35 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.31 6.20 6.65 -39.29 -0.26 5.94 16 29 H 0.07 1.54 6.42 -51.93 -0.33 1.21 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.09 6.71 -51.93 -0.35 0.74 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.34 3.25 8.86 -39.29 -0.35 2.90 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -28.32 321.33 -9.82 -38.15 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.82 Total: 6.37 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.00 Total: -17.37 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.83 Total: -48.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.32 -9.82 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702626536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.056 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds