Wall clock time and date at job start Mon Mar 30 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47498 * 120.00220 * 9 7 5 12 12 H 1.48500 * 109.47489 * 240.00144 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.53001 * 109.47063 * 180.02562 * 15 14 13 17 17 C 1.53130 * 109.51989 * 294.68151 * 16 15 14 18 18 C 1.53034 * 109.27423 * 182.43889 * 17 16 15 19 19 N 1.46844 * 109.52626 * 59.18189 * 18 17 16 20 20 C 1.46850 * 111.19680 * 298.25697 * 19 18 17 21 21 C 1.53030 * 109.52484 * 61.73658 * 20 19 18 22 22 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 23 23 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 24 24 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 25 25 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 26 26 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 27 27 H 0.97002 * 120.00670 * 179.97438 * 8 7 5 28 28 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 29 29 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 30 30 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 31 31 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 32 32 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 33 33 H 1.09003 * 109.52212 * 54.86933 * 16 15 14 34 34 H 1.08997 * 109.49940 * 302.38167 * 17 16 15 35 35 H 1.09003 * 109.49860 * 62.49891 * 17 16 15 36 36 H 1.09000 * 109.46442 * 299.16135 * 18 17 16 37 37 H 1.09003 * 109.45919 * 179.19807 * 18 17 16 38 38 H 1.00901 * 110.99777 * 62.34729 * 19 18 17 39 39 H 1.09005 * 109.46105 * 301.72203 * 20 19 18 40 40 H 1.09003 * 109.46189 * 181.75665 * 20 19 18 41 41 H 1.09007 * 109.50391 * 180.87848 * 21 20 19 42 42 H 1.09011 * 109.50348 * 60.76704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5964 1.5471 -0.2422 11 1 6.4813 -0.5119 -1.5176 12 1 6.3711 1.6266 -2.6557 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2249 5.7221 2.2819 17 6 2.5845 6.2678 1.8365 18 6 2.5051 7.7920 1.7246 19 7 2.1318 8.3609 3.0259 20 6 0.8085 7.8880 3.4521 21 6 0.8371 6.3667 3.6156 22 1 -0.3633 -1.0227 -0.1001 23 1 -0.3633 0.4248 0.9358 24 1 -0.3633 0.5981 -0.8357 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.7977 -0.0493 -2.9748 28 1 0.7987 1.7197 1.6189 29 1 2.5182 3.9269 0.6894 30 1 0.7651 3.7925 0.4126 31 1 0.3756 3.8293 2.8612 32 1 2.1288 3.9637 3.1380 33 1 0.4721 5.9594 1.5302 34 1 3.3437 5.9957 2.5698 35 1 2.8463 5.8448 0.8666 36 1 1.7554 8.0630 0.9812 37 1 3.4756 8.1849 1.4214 38 1 2.8310 8.1562 3.7239 39 1 0.0667 8.1586 2.7006 40 1 0.5466 8.3507 4.4037 41 1 -0.1494 6.0144 3.9169 42 1 1.5689 6.0962 4.3769 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702626536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:27 Heat of formation + Delta-G solvation = -48.885294 kcal Electronic energy + Delta-G solvation = -17809.477506 eV Core-core repulsion = 15207.969517 eV Total energy + Delta-G solvation = -2601.507989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05058 -38.20734 -35.48496 -33.95711 -32.47491 -31.73210 -29.41194 -27.80603 -25.07191 -24.14627 -23.56447 -22.06215 -21.45836 -20.94206 -18.40706 -17.09560 -16.84534 -16.29733 -15.93039 -15.55232 -15.23697 -15.20054 -15.02374 -14.60583 -14.06940 -13.88058 -13.41773 -13.21906 -13.16549 -12.94440 -12.84842 -12.59592 -12.44520 -12.15622 -12.07185 -11.99135 -11.93289 -11.56178 -11.50126 -11.31082 -11.05439 -10.94594 -10.45238 -9.27649 -9.02104 -8.08840 -6.21038 1.38107 1.40098 1.51980 2.42068 3.15924 3.39997 3.54676 3.78865 3.91368 4.11401 4.23570 4.31495 4.43618 4.47432 4.49990 4.54828 4.55713 4.66238 4.71225 4.75784 4.87783 5.00570 5.02357 5.04305 5.09736 5.14913 5.15792 5.20329 5.27282 5.33010 5.40347 5.51827 5.58968 5.73244 5.87833 6.10112 6.34590 6.49686 6.50783 6.92658 7.00256 7.48196 8.94730 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.005609 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.233677 B = 4991.045194 C = 5920.667974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.223 3.777 4 H -0.035 1.035 5 C -0.510 4.510 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.689 5.689 14 C 0.072 3.928 15 C -0.095 4.095 16 C -0.081 4.081 17 C -0.151 4.151 18 C 0.061 3.939 19 N -0.691 5.691 20 C 0.058 3.942 21 C -0.143 4.143 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.049 0.951 30 H 0.007 0.993 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.345 0.655 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 11.542 10.054 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.115 3.885 4 H -0.018 1.018 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.321 5.321 14 C -0.058 4.058 15 C -0.133 4.133 16 C -0.100 4.100 17 C -0.191 4.191 18 C -0.068 4.068 19 N -0.319 5.319 20 C -0.071 4.071 21 C -0.182 4.182 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.163 0.837 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.234 12.079 9.850 16.442 hybrid contribution 0.448 -1.278 -0.926 1.641 sum -4.785 10.801 8.924 14.806 Atomic orbital electron populations 1.21744 0.96218 1.01174 1.00462 1.21596 0.94302 0.98896 1.01221 1.18942 0.94108 0.90735 0.84721 1.01789 1.21471 0.92781 1.36527 1.04123 0.93474 1.25688 1.02358 0.95296 0.95544 1.70008 1.36193 1.40001 1.09869 0.85547 0.80708 0.77809 0.77804 1.19611 1.20413 1.20632 1.60594 1.36782 1.03816 1.30894 1.21835 0.98674 0.88578 0.96680 1.21493 1.01566 0.94408 0.95858 1.21108 0.96996 0.93829 0.98039 1.22310 0.97331 0.97992 1.01435 1.21967 1.01610 0.91096 0.92175 1.60715 1.04976 1.61173 1.05063 1.22054 0.91294 0.92185 1.01605 1.22244 1.02407 0.97402 0.96192 0.92281 0.92301 0.94653 0.91410 0.94420 0.93037 0.85498 0.93296 0.97503 0.91559 0.92369 0.91787 0.92335 0.92940 0.91309 0.90361 0.83726 0.91275 0.89290 0.90610 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.65 71.98 0.69 -4.58 16 2 C -0.12 -5.85 5.36 30.60 0.16 -5.69 16 3 C 0.22 11.52 2.02 44.17 0.09 11.61 16 4 H -0.04 -2.04 7.85 -2.39 -0.02 -2.06 16 5 C -0.51 -29.12 8.55 25.60 0.22 -28.90 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.01 0.52 5.29 84.65 0.45 0.96 16 8 N -0.92 -53.76 11.29 21.45 0.24 -53.51 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.69 -29.77 6.27 -495.44 -3.11 -32.87 16 14 C 0.07 2.75 5.22 86.30 0.45 3.20 16 15 C -0.10 -2.77 4.99 30.60 0.15 -2.61 16 16 C -0.08 -1.94 2.25 -10.71 -0.02 -1.97 16 17 C -0.15 -3.80 5.06 30.65 0.16 -3.64 16 18 C 0.06 1.30 6.55 86.33 0.57 1.86 16 19 N -0.69 -13.10 6.87 -514.01 -3.53 -16.63 16 20 C 0.06 0.99 6.55 86.32 0.57 1.56 16 21 C -0.14 -2.68 5.36 30.64 0.16 -2.52 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.06 1.95 6.65 -2.39 -0.02 1.93 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 3.70 5.94 -2.39 -0.01 3.69 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.33 12.55 6.65 -89.69 -0.60 11.96 16 29 H 0.05 2.11 6.42 -2.39 -0.02 2.10 16 30 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.55 6.71 -2.39 -0.02 1.54 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.34 5.88 8.86 -89.69 -0.79 5.09 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -61.31 321.33 -1.14 -62.45 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.42 Total: 24.41 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.64 Total: -30.70 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -6.39 Total: -103.01 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -61.31 -1.14 -62.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702626536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.560 kcal (2) G-P(sol) polarization free energy of solvation -61.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds