Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 H 1.09001 * 109.46907 * 185.16691 * 3 2 1 5 5 C 1.50708 * 109.46989 * 305.15990 * 3 2 1 6 6 H 1.08001 * 119.99617 * 120.00280 * 5 3 2 7 7 C 1.37870 * 120.00132 * 300.00193 * 5 3 2 8 8 N 1.31514 * 120.00016 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47357 * 59.99901 * 9 7 5 11 11 H 1.48505 * 109.47468 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47425 * 299.99605 * 9 7 5 13 13 N 1.46900 * 109.47053 * 65.16036 * 3 2 1 14 14 C 1.46903 * 110.99487 * 85.90265 * 13 3 2 15 15 C 1.53007 * 109.46578 * 174.84743 * 14 13 3 16 16 C 1.52998 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.53120 * 109.52293 * 294.68347 * 16 15 14 18 18 C 1.53038 * 109.27545 * 182.43964 * 17 16 15 19 19 N 1.46847 * 109.52606 * 59.17789 * 18 17 16 20 20 C 1.46843 * 111.19625 * 298.25745 * 19 18 17 21 21 C 1.53036 * 109.52660 * 61.74311 * 20 19 18 22 22 H 1.08993 * 109.47242 * 54.84976 * 1 2 3 23 23 H 1.08998 * 109.46977 * 294.84319 * 1 2 3 24 24 H 1.09003 * 109.46797 * 174.85158 * 1 2 3 25 25 H 1.08997 * 109.47739 * 119.99935 * 2 1 3 26 26 H 1.08998 * 109.47047 * 240.00203 * 2 1 3 27 27 H 0.97008 * 120.00137 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99816 * 321.94740 * 13 3 2 29 29 H 1.08994 * 109.46864 * 294.84073 * 14 13 3 30 30 H 1.08994 * 109.47486 * 54.84761 * 14 13 3 31 31 H 1.09004 * 109.46869 * 299.99833 * 15 14 13 32 32 H 1.08994 * 109.47198 * 59.99841 * 15 14 13 33 33 H 1.09005 * 109.52145 * 54.87156 * 16 15 14 34 34 H 1.08992 * 109.50486 * 302.37740 * 17 16 15 35 35 H 1.08997 * 109.50408 * 62.50275 * 17 16 15 36 36 H 1.09003 * 109.46607 * 299.16023 * 18 17 16 37 37 H 1.09004 * 109.46039 * 179.19726 * 18 17 16 38 38 H 1.00904 * 110.99366 * 62.35139 * 19 18 17 39 39 H 1.09000 * 109.46270 * 301.72178 * 20 19 18 40 40 H 1.09001 * 109.46263 * 181.75593 * 20 19 18 41 41 H 1.08994 * 109.50561 * 180.88053 * 21 20 19 42 42 H 1.08994 * 109.50685 * 60.75513 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1260 1.4440 -0.0926 5 6 1.4359 2.1889 -1.1617 6 1 0.8268 3.0628 -0.9839 7 6 1.6610 1.7560 -2.4511 8 7 2.4024 0.6915 -2.6675 9 14 0.9129 2.6815 -3.8910 10 1 1.4084 4.0814 -3.8909 11 1 1.3027 2.0191 -5.1616 12 1 -0.5668 2.6801 -3.7653 13 7 1.6546 2.0981 1.2569 14 6 2.6433 1.8367 2.3115 15 6 2.2772 2.6369 3.5632 16 6 3.3065 2.3642 4.6619 17 6 3.2219 0.8964 5.0894 18 6 4.2108 0.6446 6.2299 19 7 3.8880 1.5222 7.3622 20 6 4.0086 2.9372 6.9884 21 6 3.0137 3.2575 5.8706 22 1 -0.3633 0.5916 -0.8402 23 1 -0.3633 0.4318 0.9326 24 1 -0.3633 -1.0236 -0.0922 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.5610 0.3872 -3.5748 28 1 0.7320 1.8104 1.5467 29 1 2.6485 0.7730 2.5490 30 1 3.6322 2.1365 1.9649 31 1 2.2720 3.7008 3.3257 32 1 1.2883 2.3371 3.9098 33 1 4.3068 2.5777 4.2850 34 1 2.2104 0.6740 5.4291 35 1 3.4714 0.2560 4.2435 36 1 5.2235 0.8538 5.8855 37 1 4.1428 -0.3963 6.5463 38 1 2.9680 1.3211 7.7247 39 1 5.0223 3.1357 6.6403 40 1 3.7937 3.5615 7.8557 41 1 3.1143 4.3039 5.5826 42 1 1.9989 3.0723 6.2224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702626537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = -28.703660 kcal Electronic energy + Delta-G solvation = -17788.208947 eV Core-core repulsion = 15187.576100 eV Total energy + Delta-G solvation = -2600.632848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14214 -36.62791 -34.15095 -32.07924 -30.96129 -30.47979 -27.81292 -25.84285 -23.54134 -23.18862 -22.68018 -20.97906 -20.08906 -19.24679 -16.13905 -16.07682 -15.19453 -14.76767 -14.76346 -14.36779 -14.30859 -13.52719 -13.40506 -13.27676 -12.55862 -12.48009 -12.20879 -12.09895 -11.64696 -11.51685 -11.30214 -11.07863 -10.87291 -10.80003 -10.65387 -10.51946 -10.40262 -10.22407 -9.86860 -9.68262 -9.53651 -8.96234 -8.47733 -8.32222 -7.15124 -5.95328 -3.96893 3.35173 3.39429 3.42755 4.17785 4.45308 4.62250 4.74287 4.94385 5.05070 5.27024 5.29750 5.35878 5.36337 5.48068 5.66897 5.72100 5.78855 5.84970 5.93783 5.96301 6.05639 6.11634 6.20292 6.33107 6.35984 6.39048 6.56279 6.61012 6.64726 6.87689 6.90907 7.21264 7.30092 7.32692 7.53538 7.72030 7.91629 8.32070 8.59569 8.66909 9.08614 9.66678 11.11655 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044649 B = 0.004415 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.963893 B = 6340.054620 C = 6577.219352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.687 5.687 14 C 0.061 3.939 15 C -0.108 4.108 16 C -0.085 4.085 17 C -0.154 4.154 18 C 0.055 3.945 19 N -0.688 5.688 20 C 0.056 3.944 21 C -0.151 4.151 22 H 0.069 0.931 23 H 0.026 0.974 24 H 0.023 0.977 25 H 0.009 0.991 26 H 0.092 0.908 27 H 0.259 0.741 28 H 0.324 0.676 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.338 0.662 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 0.819 16.052 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.104 4.104 17 C -0.193 4.193 18 C -0.074 4.074 19 N -0.317 5.317 20 C -0.074 4.074 21 C -0.191 4.191 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.028 0.972 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.232 1.287 15.994 16.200 hybrid contribution -1.407 -0.449 -1.313 1.976 sum 0.825 0.838 14.681 14.728 Atomic orbital electron populations 1.21594 0.97727 0.98617 1.00745 1.22096 0.94977 1.01214 1.00128 1.19202 0.95822 0.88540 0.85703 0.95151 1.21050 1.30483 1.11448 0.89748 0.92148 1.24917 0.95586 0.95184 0.98723 1.69877 1.39070 1.24005 1.20733 0.86632 0.79533 0.79998 0.81635 1.20364 1.21513 1.20398 1.60794 1.03828 1.63227 1.03854 1.21912 0.97236 0.96148 0.91629 1.21597 0.97660 1.01188 0.94179 1.21158 1.00059 0.94335 0.94870 1.22354 0.99948 0.97210 0.99756 1.22040 0.99038 0.96817 0.89534 1.60700 1.34255 1.04035 1.32668 1.22024 0.99395 0.89090 0.96870 1.22306 0.99783 1.00360 0.96626 0.91214 0.95467 0.95829 0.97225 0.88970 0.93103 0.85807 0.96535 0.92113 0.91425 0.92852 0.91187 0.92219 0.90927 0.90997 0.90973 0.84489 0.91024 0.91037 0.91401 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.40 37.16 0.35 -2.45 16 2 C -0.14 -3.43 5.51 -26.73 -0.15 -3.57 16 3 C 0.22 5.38 2.33 -68.86 -0.16 5.22 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.49 -13.35 7.25 -34.44 -0.25 -13.60 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -25.50 11.38 55.43 0.63 -24.87 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.69 -14.67 6.21 -107.94 -0.67 -15.34 16 14 C 0.06 1.09 5.27 -3.82 -0.02 1.07 16 15 C -0.11 -1.56 4.99 -26.73 -0.13 -1.69 16 16 C -0.09 -1.01 2.25 -90.50 -0.20 -1.22 16 17 C -0.15 -1.73 5.06 -26.65 -0.13 -1.86 16 18 C 0.06 0.56 6.55 -3.83 -0.03 0.53 16 19 N -0.69 -6.70 6.87 -113.82 -0.78 -7.49 16 20 C 0.06 0.52 6.55 -3.84 -0.03 0.50 16 21 C -0.15 -1.54 5.36 -26.65 -0.14 -1.68 16 22 H 0.07 1.65 6.85 -51.93 -0.36 1.30 16 23 H 0.03 0.52 6.63 -51.93 -0.34 0.18 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.01 0.20 7.50 -51.93 -0.39 -0.19 16 26 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.32 6.65 6.70 -39.29 -0.26 6.38 16 29 H 0.02 0.30 6.03 -51.93 -0.31 -0.02 16 30 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.90 6.70 -51.93 -0.35 0.55 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.34 2.96 8.86 -39.29 -0.35 2.61 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -27.71 317.95 -9.73 -37.44 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.69 Total: 6.31 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.99 Total: -17.30 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.82 Total: -47.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.71 -9.73 -37.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702626537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.741 kcal (2) G-P(sol) polarization free energy of solvation -27.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds