Wall clock time and date at job start Mon Mar 30 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 H 1.09001 * 109.46907 * 185.16691 * 3 2 1 5 5 C 1.50708 * 109.46989 * 305.15990 * 3 2 1 6 6 H 1.08001 * 119.99617 * 120.00280 * 5 3 2 7 7 C 1.37870 * 120.00132 * 300.00193 * 5 3 2 8 8 N 1.31514 * 120.00016 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47357 * 59.99901 * 9 7 5 11 11 H 1.48505 * 109.47468 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47425 * 299.99605 * 9 7 5 13 13 N 1.46900 * 109.47053 * 65.16036 * 3 2 1 14 14 C 1.46903 * 110.99487 * 85.90265 * 13 3 2 15 15 C 1.53007 * 109.46578 * 174.84743 * 14 13 3 16 16 C 1.52998 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.53120 * 109.52293 * 294.68347 * 16 15 14 18 18 C 1.53038 * 109.27545 * 182.43964 * 17 16 15 19 19 N 1.46847 * 109.52606 * 59.17789 * 18 17 16 20 20 C 1.46843 * 111.19625 * 298.25745 * 19 18 17 21 21 C 1.53036 * 109.52660 * 61.74311 * 20 19 18 22 22 H 1.08993 * 109.47242 * 54.84976 * 1 2 3 23 23 H 1.08998 * 109.46977 * 294.84319 * 1 2 3 24 24 H 1.09003 * 109.46797 * 174.85158 * 1 2 3 25 25 H 1.08997 * 109.47739 * 119.99935 * 2 1 3 26 26 H 1.08998 * 109.47047 * 240.00203 * 2 1 3 27 27 H 0.97008 * 120.00137 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99816 * 321.94740 * 13 3 2 29 29 H 1.08994 * 109.46864 * 294.84073 * 14 13 3 30 30 H 1.08994 * 109.47486 * 54.84761 * 14 13 3 31 31 H 1.09004 * 109.46869 * 299.99833 * 15 14 13 32 32 H 1.08994 * 109.47198 * 59.99841 * 15 14 13 33 33 H 1.09005 * 109.52145 * 54.87156 * 16 15 14 34 34 H 1.08992 * 109.50486 * 302.37740 * 17 16 15 35 35 H 1.08997 * 109.50408 * 62.50275 * 17 16 15 36 36 H 1.09003 * 109.46607 * 299.16023 * 18 17 16 37 37 H 1.09004 * 109.46039 * 179.19726 * 18 17 16 38 38 H 1.00904 * 110.99366 * 62.35139 * 19 18 17 39 39 H 1.09000 * 109.46270 * 301.72178 * 20 19 18 40 40 H 1.09001 * 109.46263 * 181.75593 * 20 19 18 41 41 H 1.08994 * 109.50561 * 180.88053 * 21 20 19 42 42 H 1.08994 * 109.50685 * 60.75513 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1260 1.4440 -0.0926 5 6 1.4359 2.1889 -1.1617 6 1 0.8268 3.0628 -0.9839 7 6 1.6610 1.7560 -2.4511 8 7 2.4024 0.6915 -2.6675 9 14 0.9129 2.6815 -3.8910 10 1 1.4084 4.0814 -3.8909 11 1 1.3027 2.0191 -5.1616 12 1 -0.5668 2.6801 -3.7653 13 7 1.6546 2.0981 1.2569 14 6 2.6433 1.8367 2.3115 15 6 2.2772 2.6369 3.5632 16 6 3.3065 2.3642 4.6619 17 6 3.2219 0.8964 5.0894 18 6 4.2108 0.6446 6.2299 19 7 3.8880 1.5222 7.3622 20 6 4.0086 2.9372 6.9884 21 6 3.0137 3.2575 5.8706 22 1 -0.3633 0.5916 -0.8402 23 1 -0.3633 0.4318 0.9326 24 1 -0.3633 -1.0236 -0.0922 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.5610 0.3872 -3.5748 28 1 0.7320 1.8104 1.5467 29 1 2.6485 0.7730 2.5490 30 1 3.6322 2.1365 1.9649 31 1 2.2720 3.7008 3.3257 32 1 1.2883 2.3371 3.9098 33 1 4.3068 2.5777 4.2850 34 1 2.2104 0.6740 5.4291 35 1 3.4714 0.2560 4.2435 36 1 5.2235 0.8538 5.8855 37 1 4.1428 -0.3963 6.5463 38 1 2.9680 1.3211 7.7247 39 1 5.0223 3.1357 6.6403 40 1 3.7937 3.5615 7.8557 41 1 3.1143 4.3039 5.5826 42 1 1.9989 3.0723 6.2224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702626537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:29 Heat of formation + Delta-G solvation = -46.831762 kcal Electronic energy + Delta-G solvation = -17788.995041 eV Core-core repulsion = 15187.576100 eV Total energy + Delta-G solvation = -2601.418941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06885 -38.35666 -35.53181 -33.84534 -32.18397 -31.72480 -29.30197 -27.61826 -25.23891 -24.46629 -23.65090 -22.12609 -21.28957 -20.94065 -18.12712 -17.02084 -16.73118 -16.67004 -15.65239 -15.55768 -15.31785 -15.12130 -14.87365 -14.51639 -14.17149 -14.00837 -13.69138 -13.14562 -13.04149 -12.85899 -12.75795 -12.49227 -12.45094 -12.19676 -12.12472 -12.00903 -11.78878 -11.56008 -11.45232 -11.33537 -11.12517 -10.91372 -10.43860 -9.28654 -8.90514 -8.05992 -6.14967 1.43473 1.44499 1.52036 2.45223 3.22366 3.40544 3.55766 3.77844 3.92809 4.13367 4.19352 4.25439 4.46659 4.49393 4.52153 4.55086 4.60271 4.66944 4.70124 4.76296 4.89204 4.93172 5.01437 5.07258 5.09472 5.13915 5.19091 5.21661 5.33577 5.40759 5.42226 5.50005 5.68493 5.72687 5.83855 6.10052 6.31480 6.51838 6.68914 6.86606 6.98312 7.52992 8.99229 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044649 B = 0.004415 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.963893 B = 6340.054620 C = 6577.219352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C 0.220 3.780 4 H -0.008 1.008 5 C -0.502 4.502 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.691 5.691 14 C 0.064 3.936 15 C -0.096 4.096 16 C -0.082 4.082 17 C -0.149 4.149 18 C 0.060 3.940 19 N -0.691 5.691 20 C 0.058 3.942 21 C -0.145 4.145 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.259 0.741 28 H 0.332 0.668 29 H 0.019 0.981 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.346 0.654 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 1.141 17.451 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.010 0.990 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.322 5.322 14 C -0.065 4.065 15 C -0.134 4.134 16 C -0.101 4.101 17 C -0.188 4.188 18 C -0.070 4.070 19 N -0.320 5.320 20 C -0.071 4.071 21 C -0.184 4.184 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.269 1.613 17.416 17.537 hybrid contribution -1.072 -0.554 -1.713 2.095 sum 0.197 1.059 15.703 15.740 Atomic orbital electron populations 1.21474 0.95800 0.99630 1.00868 1.21939 0.96613 0.99949 0.99222 1.18961 0.93318 0.89559 0.87009 0.98994 1.21271 1.30485 1.11403 0.90924 0.92986 1.25620 0.95933 0.95906 1.01093 1.70013 1.39960 1.25123 1.21107 0.85692 0.79076 0.78701 0.78629 1.20164 1.21184 1.19534 1.60686 1.04897 1.62945 1.03635 1.21932 0.95587 0.96974 0.92032 1.21481 0.98811 0.99948 0.93142 1.21109 0.98648 0.95449 0.94878 1.22305 1.00575 0.96243 0.99691 1.21990 0.98284 0.97529 0.89193 1.60698 1.34876 1.04122 1.32262 1.22032 0.98851 0.89134 0.97097 1.22247 1.00347 0.99926 0.95868 0.93581 0.93235 0.93873 0.95848 0.92065 0.93193 0.84999 0.96243 0.93890 0.92140 0.92052 0.92134 0.91788 0.92460 0.91573 0.90015 0.83624 0.91509 0.89438 0.91181 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.40 71.98 0.68 -4.38 16 2 C -0.14 -6.54 5.51 30.60 0.17 -6.37 16 3 C 0.22 11.22 2.33 44.17 0.10 11.32 16 4 H -0.01 -0.46 7.70 -2.39 -0.02 -0.48 16 5 C -0.50 -27.77 7.25 25.60 0.19 -27.58 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.70 5.28 84.65 0.45 1.14 16 8 N -0.92 -53.28 11.38 21.44 0.24 -53.04 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 N -0.69 -29.46 6.21 -495.42 -3.08 -32.54 16 14 C 0.06 2.30 5.27 86.30 0.46 2.76 16 15 C -0.10 -2.66 4.99 30.60 0.15 -2.51 16 16 C -0.08 -1.85 2.25 -10.71 -0.02 -1.87 16 17 C -0.15 -3.15 5.06 30.65 0.16 -2.99 16 18 C 0.06 1.10 6.55 86.33 0.57 1.67 16 19 N -0.69 -11.88 6.87 -514.00 -3.53 -15.41 16 20 C 0.06 0.96 6.55 86.33 0.57 1.53 16 21 C -0.14 -2.63 5.36 30.65 0.16 -2.46 16 22 H 0.05 2.14 6.85 -2.39 -0.02 2.13 16 23 H 0.05 1.83 6.63 -2.39 -0.02 1.81 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.02 1.01 7.50 -2.39 -0.02 0.99 16 26 H 0.06 3.31 6.22 -2.39 -0.01 3.29 16 27 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.33 13.22 6.70 -89.70 -0.60 12.62 16 29 H 0.02 0.69 6.03 -2.39 -0.01 0.68 16 30 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.38 6.70 -2.39 -0.02 1.37 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.35 5.13 8.86 -89.69 -0.79 4.33 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -59.17 317.95 -1.13 -60.30 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.41 Total: 24.28 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.62 Total: -29.74 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -6.36 Total: -100.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -59.17 -1.13 -60.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702626537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.469 kcal (2) G-P(sol) polarization free energy of solvation -59.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds